CmoCh01G002430 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G002430
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RNA/RNP complex-1-interacting phosphatase, putative
Location	Cmo_Chr01: 1098288 .. 1098653 (-)
RNA-Seq Expression	CmoCh01G002430
Synteny	CmoCh01G002430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCCTCTCCGCCGGCCACCGCTATTTCTTCGGCTCCGCCGCCGTGCATTTCAGAAACAGAAGCATCAGCCCCAGATCGATCGTCCTCCTCTGCCTCCATAACCAAAACCCTTCAGATCCTTCAGATCCTTCAGAAGAAAAGCCGAAGAAAGAGCAAGAAAAAAAACAGTCGATTCCAGGGTTTGTTCAGAGATTCGAGAAGATGGGAATAGAATTGAAGGAGAAATTAAGCCCTCAGAGAAAAGGAGACTGGAAAGATTTGACATTGATGAGCCTTTCATTTGCTGTTTATGTATATATTTCTCAGAAGATTGTCTGTGCTTATTTTGTTTGGATGTCAATGCCAAAGCAAGTATGGTAG

mRNA sequence

ATGGCAGCCCTCTCCGCCGGCCACCGCTATTTCTTCGGCTCCGCCGCCGTGCATTTCAGAAACAGAAGCATCAGCCCCAGATCGATCGTCCTCCTCTGCCTCCATAACCAAAACCCTTCAGATCCTTCAGATCCTTCAGAAGAAAAGCCGAAGAAAGAGCAAGAAAAAAAACAGTCGATTCCAGGGTTTGTTCAGAGATTCGAGAAGATGGGAATAGAATTGAAGGAGAAATTAAGCCCTCAGAGAAAAGGAGACTGGAAAGATTTGACATTGATGAGCCTTTCATTTGCTGTTTATGTATATATTTCTCAGAAGATTGTCTGTGCTTATTTTGTTTGGATGTCAATGCCAAAGCAAGTATGGTAG

Coding sequence (CDS)

ATGGCAGCCCTCTCCGCCGGCCACCGCTATTTCTTCGGCTCCGCCGCCGTGCATTTCAGAAACAGAAGCATCAGCCCCAGATCGATCGTCCTCCTCTGCCTCCATAACCAAAACCCTTCAGATCCTTCAGATCCTTCAGAAGAAAAGCCGAAGAAAGAGCAAGAAAAAAAACAGTCGATTCCAGGGTTTGTTCAGAGATTCGAGAAGATGGGAATAGAATTGAAGGAGAAATTAAGCCCTCAGAGAAAAGGAGACTGGAAAGATTTGACATTGATGAGCCTTTCATTTGCTGTTTATGTATATATTTCTCAGAAGATTGTCTGTGCTTATTTTGTTTGGATGTCAATGCCAAAGCAAGTATGGTAG

Protein sequence

MAALSAGHRYFFGSAAVHFRNRSISPRSIVLLCLHNQNPSDPSDPSEEKPKKEQEKKQSIPGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMSMPKQVW

Homology

[Close]

BLAST of CmoCh01G002430 vs. ExPASy TrEMBL
Match: A0A5D3BX35 (Putative RNA/RNP complex-1-interacting phosphatase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00020 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.1e-46
Identity = 101/126 (80.16%), Postives = 113/126 (89.68%), Query Frame = 0


Query: 1   MAALSAGHRYFF----GSAAVHFRNRSISPRSIVLLCLHNQNPSDPSDPSEEKPKKE-QE 60
           MAALSAGHR+FF    GSA V FRNRSISPRSI +LCLHNQ+PSDP+D S+EK KK+ QE
Sbjct: 1   MAALSAGHRHFFYSLSGSAIVQFRNRSISPRSIAVLCLHNQDPSDPTDCSDEKTKKKSQE 60

Query: 61  KKQSIPGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMS 120
           +K+ + GFVQRFEKMGI+LKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYF+WMS
Sbjct: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMS 120

Query: 121 MPKQVW 122
           MPK +W
Sbjct: 121 MPKPLW 126

[Close]

BLAST of CmoCh01G002430 vs. ExPASy TrEMBL
Match: A0A0A0LD14 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G690300 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 7.4e-46
Identity = 100/126 (79.37%), Postives = 113/126 (89.68%), Query Frame = 0


Query: 1   MAALSAGHRYFF----GSAAVHFRNRSISPRSIVLLCLHNQNPSDPSDPSEEKPKKE-QE 60
           MAALSAGHR+FF    GSA + FRNRSISPRSI +LCLHNQ+PSDP+D SEEK KK+ QE
Sbjct: 1   MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQE 60

Query: 61  KKQSIPGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMS 120
           +K+ + GFVQRFEKMGI+LKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYF+WM+
Sbjct: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMT 120

Query: 121 MPKQVW 122
           MPK +W
Sbjct: 121 MPKPLW 126

[Close]

BLAST of CmoCh01G002430 vs. ExPASy TrEMBL
Match: A0A6J1DGN1 (uncharacterized protein LOC111020315 OS=Momordica charantia OX=3673 GN=LOC111020315 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.2e-37
Identity = 90/122 (73.77%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 1   MAALSAGHRYFF--GSAAVHFRNRSISPRSIVLLCLHNQNPSDPSDPSEEKPKK-EQEKK 60
           MAALSAGHR+FF  G+AA   R R  SP+SIVLLC H+Q      DPSEE  K+ E+ K+
Sbjct: 1   MAALSAGHRHFFRRGAAAQQLRTRRSSPKSIVLLCRHSQ------DPSEENSKEGEERKQ 60

Query: 61  QSIPGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMSMP 120
           Q I GFV+RFEKMG+ELKEKLSPQRKGDWKD+ LMSLSFAVYVYISQKIVCAYFVWMSMP
Sbjct: 61  QKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVYVYISQKIVCAYFVWMSMP 116

[Close]

BLAST of CmoCh01G002430 vs. ExPASy TrEMBL
Match: A0A5B7BW37 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_041662 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.4e-23
Identity = 65/121 (53.72%), Postives = 83/121 (68.60%), Query Frame = 0


Query: 1   MAALSAGHRYFFGSAAVHFRNRSISPRSIVLLCLHNQNPSDPSDPSEEKPKKEQEKKQSI 60
           MAALS GH +   ++++       +PR ++ +   ++ P DP  P E K +KE+EKKQS+
Sbjct: 1   MAALSIGHSFHKRNSSIQELKNQTNPRILISISCQSRIPVDPPSP-ETKKEKEKEKKQSL 60

Query: 61  PGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMSMPKQV 120
             F    EK+G  LKE LSP++KGDWKD+ LMSLSFAVYVYISQKIVCAY  WMSM KQ 
Sbjct: 61  TRFFVGVEKLGKGLKENLSPKQKGDWKDVMLMSLSFAVYVYISQKIVCAYCAWMSMLKQP 120

Query: 121 W 122
           W
Sbjct: 121 W 120

[Close]

BLAST of CmoCh01G002430 vs. ExPASy TrEMBL
Match: A0A660KVF0 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_010795 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.3e-23
Identity = 67/125 (53.60%), Postives = 84/125 (67.20%), Query Frame = 0


Query: 1   MAALSAGHRYFFGSAAVHFRNRSISPRSIVLLCLHNQNPSDPSDPSEEKPKKEQEKKQSI 60
           MAALS GH +           +S SP +++L C     P D S+P   + KKE+ K++ +
Sbjct: 1   MAALSIGHSFHREPITYQQLRKSSSPTTLILSCCQRHKPVDSSNP---RTKKEKSKRKLL 60

Query: 61  PGFVQR----FEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMSM 120
              +QR    FEK G  L+E LSP++KGDWKDLTLMSLSFAVYVYISQK+VCAYF WMSM
Sbjct: 61  ---LQRSSVGFEKFGKILRENLSPKQKGDWKDLTLMSLSFAVYVYISQKLVCAYFAWMSM 119

Query: 121 PKQVW 122
           PKQ+W
Sbjct: 121 PKQLW 119

[Close]

BLAST of CmoCh01G002430 vs. NCBI nr
Match: KAG6606884.1 (hypothetical protein SDJN03_00226, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036590.1 hypothetical protein SDJN02_00209, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 242.3 bits (617), Expect = 2.2e-60
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAALSAGHRYFFGSAAVHFRNRSISPRSIVLLCLHNQNPSDPSDPSEEKPKKEQEKKQSI 60
           MAALSAGHRYFFGSAAVHFRNRSISPRSIVLLCLHNQNPSDPSDPSEEKPKKEQEKKQSI
Sbjct: 1   MAALSAGHRYFFGSAAVHFRNRSISPRSIVLLCLHNQNPSDPSDPSEEKPKKEQEKKQSI 60

Query: 61  PGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMSMPKQV 120
           PGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMSMPKQV
Sbjct: 61  PGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMSMPKQV 120

Query: 121 W 122
           W
Sbjct: 121 W 121

[Close]

BLAST of CmoCh01G002430 vs. NCBI nr
Match: KAA0048367.1 (putative RNA/RNP complex-1-interacting phosphatase [Cucumis melo var. makuwa] >TYK04067.1 putative RNA/RNP complex-1-interacting phosphatase [Cucumis melo var. makuwa])

HSP 1 Score: 195.7 bits (496), Expect = 2.4e-46
Identity = 101/126 (80.16%), Postives = 113/126 (89.68%), Query Frame = 0


Query: 1   MAALSAGHRYFF----GSAAVHFRNRSISPRSIVLLCLHNQNPSDPSDPSEEKPKKE-QE 60
           MAALSAGHR+FF    GSA V FRNRSISPRSI +LCLHNQ+PSDP+D S+EK KK+ QE
Sbjct: 1   MAALSAGHRHFFYSLSGSAIVQFRNRSISPRSIAVLCLHNQDPSDPTDCSDEKTKKKSQE 60

Query: 61  KKQSIPGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMS 120
           +K+ + GFVQRFEKMGI+LKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYF+WMS
Sbjct: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMS 120

Query: 121 MPKQVW 122
           MPK +W
Sbjct: 121 MPKPLW 126

[Close]

BLAST of CmoCh01G002430 vs. NCBI nr
Match: KGN58582.1 (hypothetical protein Csa_001602 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 1.5e-45
Identity = 100/126 (79.37%), Postives = 113/126 (89.68%), Query Frame = 0


Query: 1   MAALSAGHRYFF----GSAAVHFRNRSISPRSIVLLCLHNQNPSDPSDPSEEKPKKE-QE 60
           MAALSAGHR+FF    GSA + FRNRSISPRSI +LCLHNQ+PSDP+D SEEK KK+ QE
Sbjct: 1   MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQE 60

Query: 61  KKQSIPGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMS 120
           +K+ + GFVQRFEKMGI+LKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYF+WM+
Sbjct: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMT 120

Query: 121 MPKQVW 122
           MPK +W
Sbjct: 121 MPKPLW 126

[Close]

BLAST of CmoCh01G002430 vs. NCBI nr
Match: KAG6581569.1 (hypothetical protein SDJN03_21571, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018076.1 hypothetical protein SDJN02_19942, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 189.1 bits (479), Expect = 2.2e-44
Identity = 97/121 (80.17%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 1   MAALSAGHRYFFGSAAVHFRNRSISPRSIVLLCLHNQNPSDPSDPSEEKPKKEQEKKQSI 60
           MAALSAGHR+FF   AV F NRSISPR IVLLC HN N  DPSD SEEK KK+QE KQ +
Sbjct: 1   MAALSAGHRHFF--PAVQFGNRSISPRPIVLLCCHNHN-QDPSDSSEEKTKKDQEGKQMV 60

Query: 61  PGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMSMPKQV 120
           PGF+QR++KMG+ELKEKLSPQRKGDWKD+TLMSLSFAVYVYISQKIVCAYF+WMSMPKQ+
Sbjct: 61  PGFIQRYKKMGMELKEKLSPQRKGDWKDVTLMSLSFAVYVYISQKIVCAYFLWMSMPKQL 118

Query: 121 W 122
           W
Sbjct: 121 W 118

[Close]

BLAST of CmoCh01G002430 vs. NCBI nr
Match: XP_022152649.1 (uncharacterized protein LOC111020315 [Momordica charantia])

HSP 1 Score: 164.9 bits (416), Expect = 4.5e-37
Identity = 90/122 (73.77%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 1   MAALSAGHRYFF--GSAAVHFRNRSISPRSIVLLCLHNQNPSDPSDPSEEKPKK-EQEKK 60
           MAALSAGHR+FF  G+AA   R R  SP+SIVLLC H+Q      DPSEE  K+ E+ K+
Sbjct: 1   MAALSAGHRHFFRRGAAAQQLRTRRSSPKSIVLLCRHSQ------DPSEENSKEGEERKQ 60

Query: 61  QSIPGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMSMP 120
           Q I GFV+RFEKMG+ELKEKLSPQRKGDWKD+ LMSLSFAVYVYISQKIVCAYFVWMSMP
Sbjct: 61  QKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVYVYISQKIVCAYFVWMSMP 116

[Close]

BLAST of CmoCh01G002430 vs. TAIR 10
Match: AT3G52070.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-09
Identity = 37/76 (48.68%), Postives = 48/76 (63.16%), Query Frame = 0


Query: 49  KPKKEQEKKQSIPGFVQRFEKMGIELKEKLSPQ-RKGDWKDLTLMSLSFAVYVYISQKIV 108
           K K  +E +  I   ++R      ++ + L P+ +KGD KDL LMSLSFAVYVYISQ +V
Sbjct: 39  KQKLPEENEGVIQRTLRRMISEAGKIGKNLKPEKKKGDVKDLMLMSLSFAVYVYISQLLV 98

Query: 109 CAYFVW--MSMPKQVW 122
           CAYF W  +S PK  W
Sbjct: 99  CAYFSWQHLSFPKSSW 114

[Close]

BLAST of CmoCh01G002430 vs. TAIR 10
Match: AT3G52070.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-08
Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 49  KPKKEQEKKQSIPGFVQRFEKMGIELKEKLSPQ-RKGDWKDLTLMSLSFAVYVYISQKIV 108
           K K  +E +  I   ++R      ++ + L P+ +KGD KDL LMSLSFAVYVYISQ +V
Sbjct: 39  KQKLPEENEGVIQRTLRRMISEAGKIGKNLKPEKKKGDVKDLMLMSLSFAVYVYISQLLV 98

Query: 109 CAYFVW--MSMPK 119
           CAYF W  +S PK
Sbjct: 99  CAYFSWQHLSFPK 111

The following BLAST results are available for this feature:

BLAST of CmoCh01G002430 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G002430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BX35	1.1e-46	80.16	Putative RNA/RNP complex-1-interacting phosphatase OS=Cucumis melo var. makuwa O...	[more]
A0A0A0LD14	7.4e-46	79.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G690300 PE=4 SV=1	[more]
A0A6J1DGN1	2.2e-37	73.77	uncharacterized protein LOC111020315 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A5B7BW37	1.4e-23	53.72	Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_041662 PE=4 SV=1	[more]
A0A660KVF0	2.3e-23	53.60	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_010795 PE=4 SV=1	[more]

BLAST of CmoCh01G002430 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606884.1	2.2e-60	100.00	hypothetical protein SDJN03_00226, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0048367.1	2.4e-46	80.16	putative RNA/RNP complex-1-interacting phosphatase [Cucumis melo var. makuwa] >T...	[more]
KGN58582.1	1.5e-45	79.37	hypothetical protein Csa_001602 [Cucumis sativus]	[more]
KAG6581569.1	2.2e-44	80.17	hypothetical protein SDJN03_21571, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022152649.1	4.5e-37	73.77	uncharacterized protein LOC111020315 [Momordica charantia]	[more]

BLAST of CmoCh01G002430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52070.1	1.4e-09	48.68	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G52070.2	1.2e-08	49.32	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G002430.1	CmoCh01G002430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane