CmoCh01G002300 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G002300
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	60S ribosomal protein L31
Location	Cmo_Chr01: 1029800 .. 1031861 (-)
RNA-Seq Expression	CmoCh01G002300
Synteny	CmoCh01G002300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGGGTTTTATCTTCAGCGGCAGAGAGTTGAGTTTCCCGGGCCGTGAACAAAAAATGGCGGATAAATCGGCCAAGGCAAGAAAAAGCGAGGTCGTCACCAGGGAGTATACCGTCAATCTCCACAAACGCTTGCACGGATGGTAACTCTCTCCCTCTCTCTTTCTCTCCCGGATTTGCTGGTTTTGATATGGTGAAAAGTACAGATGAATTTGATTCAGCTGTAGGTTGATTTGTCGGCATGATTTTTGTCCTCCTGCGTTTAATTTCGTAGTTTAACCGGTTTTATGTCGATAGATATTAAATGAGTCTTGAATTTAATGTTCTGTTCCGTTGTGGGCTGTGTTATTCGAGTGATATATTGTGAGGATTGTCGATTTTGACTGTGCACTTGAATTGATGACATTGGGGGGGTCAATGTTCTTTGCTGTTCTTAGTAGTTTGTATAATTTGGACTATTGCGAGTGCAGTTGCACCTTAGCAAGTTTTATTAGTTGTGCTTGATGAGTTTGGCATCATTCTGGTACTGTTCAATTTTTTTTCCATGATAGGAGTTCTGGTTCTTAACTAACAACTGACTTAATTATATGTTATGTTGCTTCTAGCCTACATATTGTACTCATCTTGAAAGGTTATTCTTCAATTTTCTGGTCCTAGAAAAATATCCTCACGGATACCTCTGTGCTTATGTTCTATTCATTTGCTCTCGTTAGAGATACTTGGCACCTTTGTGCGTTTCTAAACCTGCGTGCTTGTTTGATCCACAACATATCTATAATAGCCCAAGCCCACCGCTAGTAGATTATCCTTTTTAGGCTTTCCCCTTAAAGTCTTGCCTTCAAAGTTTTAAAATGTGTCTACTAAAGAGAGGTTTTCACACCCTTATAAGGAATGTTTTGTTCCCCTCTCCAACCGATGTAGGATCTCACAATTCACCTTCCTGGTGCCTCAGCGTCCTTCTTGGCACACCACCCAATGTTTGGTTCTGATACTATTTGTAACAGCTCTAGCTGACCGCTAGATATTGTCCTCTATAGACTTTCTCTTCGAGAGCTTCCTCTCAAGGTTTTAATATGTCTCTACTAGGGAGAGGTTTACACACCTGTATAAGGAATGATTCGTTCCCCTCTCCAACCGACGTGGGATCTCACAGATTTGGAAAAAGCTAAGCATTAGCATGGGCTAGATTTAGTCATAAATAGGGGAAATGGGAAAGGGAGAATGGGGAAGCATTGATTCAGTGAGTTTGGTTAGGGATTGAGTGAGAGTGCTCAAGAAAGAAGGTTTAAATACCTCGAATACTTGGTTACCTTGTATCTCCGTTATCTTACATTTCAATACATTTGGGTTCTGTCATATTAGTCTTTGATTTCAATGCCTTGTTATGTACCTTTTATATCTTGAATGCTTTTAGTGACTTCTTATTCTTACTAATCATATGCAGCACATTCAAGAAGAAGGCACCGAAGGATATCAAGGAACTCAGAAAGTTTGCTCAGAATGCTATGGGTACCACTGATGTTAGAGTGGACGTGAAACTTAACAAGCATATATGGAGTCGCGGAATTAGGAGTGTACCAAGGAGGGTTCGAGGGCGCATTGCATGAAAGCATAACGACGAGGAAGATGCCAAGGAGGAATTCTATTCCTTAGTAACTGTCGCAGAGGTACCTGCAGAGGGATTCAAGGGCTTGGATACCAAGGTCATTGATGAAGAAGAGGACTAAATGAGCTTTCCCAAAACTAAGGTCAATTCTTGGTTTGCTATGGTCTTGCACATCCATTTTTGACTCGAGGTCTTTTGCAACTTTAGAAATTAAACCAAACCCATTAGGTATAGACTGAGCTATGTTTGAATTGATATGAATTGATGTGTAAATCACCCTCGAGCTTGTTTAGCTTATTTATTATTAATCATAGATACGTATTTAAGTCACAAGCAATTAAGGAAAGATATAATGTCTAACGGGGTAAATGACTTTACTAATTGAAGTATATCCCTCGATTAACATATCTGTAGGACAATGACAGGTTCGTGTTGAATTAAAAGTGAAATATTTAATTA

mRNA sequence

TAGGGTTTTATCTTCAGCGGCAGAGAGTTGAGTTTCCCGGGCCGTGAACAAAAAATGGCGGATAAATCGGCCAAGGCAAGAAAAAGCGAGGTCGTCACCAGGGAGTATACCGTCAATCTCCACAAACGCTTGCACGGATGCACATTCAAGAAGAAGGCACCGAAGGATATCAAGGAACTCAGAAAGTTTGCTCAGAATGCTATGGGTACCACTGATGTTAGAGTGGACGTGAAACTTAACAAGCATATATGGAGTCGCGGAATTAGGAGTGTACCAAGGAGGGTTCGAGGGCGCATTGCATGAAAGCATAACGACGAGGAAGATGCCAAGGAGGAATTCTATTCCTTAGTAACTGTCGCAGAGGTACCTGCAGAGGGATTCAAGGGCTTGGATACCAAGGTCATTGATGAAGAAGAGGACTAAATGAGCTTTCCCAAAACTAAGGTCAATTCTTGGTTTGCTATGGTCTTGCACATCCATTTTTGACTCGAGGTCTTTTGCAACTTTAGAAATTAAACCAAACCCATTAGGTATAGACTGAGCTATGTTTGAATTGATATGAATTGATGTGTAAATCACCCTCGAGCTTGTTTAGCTTATTTATTATTAATCATAGATACGTATTTAAGTCACAAGCAATTAAGGAAAGATATAATGTCTAACGGGGTAAATGACTTTACTAATTGAAGTATATCCCTCGATTAACATATCTGTAGGACAATGACAGGTTCGTGTTGAATTAAAAGTGAAATATTTAATTA

Coding sequence (CDS)

ATGGCGGATAAATCGGCCAAGGCAAGAAAAAGCGAGGTCGTCACCAGGGAGTATACCGTCAATCTCCACAAACGCTTGCACGGATGCACATTCAAGAAGAAGGCACCGAAGGATATCAAGGAACTCAGAAAGTTTGCTCAGAATGCTATGGGTACCACTGATGTTAGAGTGGACGTGAAACTTAACAAGCATATATGGAGTCGCGGAATTAGGAGTGTACCAAGGAGGGTTCGAGGGCGCATTGCATGA

Protein sequence

MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKDIKELRKFAQNAMGTTDVRVDVKLNKHIWSRGIRSVPRRVRGRIA

Homology

[Close]

BLAST of CmoCh01G002300 vs. ExPASy Swiss-Prot
Match: Q9M573 (60S ribosomal protein L31 OS=Perilla frutescens OX=48386 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-34
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKDIKELRKFAQNAMGTTDVRVDVK 60
          MADK +K RK EVV+REYT+NLHKRLHGCTFKKKAPK IKE+RKFAQ AMGTTDVRVDVK
Sbjct: 1  MADKGSKPRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVK 60

Query: 61 LNKHIWSRGIRSVPRRVRGRIA 83
          LNKHIWSRGIRSVPRR+R RIA
Sbjct: 61 LNKHIWSRGIRSVPRRIRVRIA 82

[Close]

BLAST of CmoCh01G002300 vs. ExPASy Swiss-Prot
Match: Q9MAV7 (60S ribosomal protein L31 OS=Panax ginseng OX=4054 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 7.5e-31
Identity = 66/79 (83.54%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 4  KSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKDIKELRKFAQNAMGTTDVRVDVKLNK 63
          +  K RK EVVTREYT+NLHKRLHGCTFKKKAP  IKE+RKFAQ AMGT DVRVDVKLNK
Sbjct: 3  EKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTKDVRVDVKLNK 62

Query: 64 HIWSRGIRSVPRRVRGRIA 83
           IWSRGIRSVPRRVR RIA
Sbjct: 63 QIWSRGIRSVPRRVRVRIA 81

[Close]

BLAST of CmoCh01G002300 vs. ExPASy Swiss-Prot
Match: P46290 (60S ribosomal protein L31 OS=Nicotiana glutinosa OX=35889 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.3e-30
Identity = 68/82 (82.93%), Postives = 72/82 (87.80%), Query Frame = 0


Query: 1  MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKDIKELRKFAQNAMGTTDVRVDVK 60
          M+DK+ K RK EVVTREYT+NLHKRLH CTFKKKAP  IKE+RKFAQ AMGT DVRVDVK
Sbjct: 1  MSDKT-KGRKEEVVTREYTINLHKRLHSCTFKKKAPTAIKEIRKFAQKAMGTKDVRVDVK 60

Query: 61 LNKHIWSRGIRSVPRRVRGRIA 83
          LNK IWSRGIRSVPRRVR RIA
Sbjct: 61 LNKQIWSRGIRSVPRRVRVRIA 81

[Close]

BLAST of CmoCh01G002300 vs. ExPASy Swiss-Prot
Match: O65071 (60S ribosomal protein L31 OS=Picea mariana OX=3335 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.4e-29
Identity = 59/79 (74.68%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 4  KSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKDIKELRKFAQNAMGTTDVRVDVKLNK 63
          +  K+R++EV TREYT+NLH+RLHGCTFKK APK +KE+RKFAQ AMGTTDVR+DVKLNK
Sbjct: 3  EKGKSRRNEVATREYTINLHRRLHGCTFKKMAPKAVKEIRKFAQKAMGTTDVRLDVKLNK 62

Query: 64 HIWSRGIRSVPRRVRGRIA 83
           +WSRGIRSVPRR+R RI+
Sbjct: 63 AVWSRGIRSVPRRMRVRIS 81

[Close]

BLAST of CmoCh01G002300 vs. ExPASy Swiss-Prot
Match: P51420 (60S ribosomal protein L31-3 OS=Arabidopsis thaliana OX=3702 GN=RPL31C PE=3 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 5.9e-28
Identity = 58/76 (76.32%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 7  KARKSEVVTREYTVNLHKRLHGCTFKKKAPKDIKELRKFAQNAMGTTDVRVDVKLNKHIW 66
          K RK EV+TREYT+NLH+RLH CTFKKKAPK IKE+RKFA+ AMGT DVRVDVKLNK IW
Sbjct: 5  KGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIW 64

Query: 67 SRGIRSVPRRVRGRIA 83
          S+GIR  PRR+R R+A
Sbjct: 65 SKGIRGPPRRIRVRVA 80

[Close]

BLAST of CmoCh01G002300 vs. ExPASy TrEMBL
Match: A0A6J1DGM1 (60S ribosomal protein L31 OS=Momordica charantia OX=3673 GN=LOC111020269 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.6e-34
Identity = 78/82 (95.12%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKDIKELRKFAQNAMGTTDVRVDVK 60
          MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAP  IKELRKFAQ AMGTTDVRVDVK
Sbjct: 1  MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPNAIKELRKFAQKAMGTTDVRVDVK 60

Query: 61 LNKHIWSRGIRSVPRRVRGRIA 83
          LNKHIWSRGIRSVPRRVR RIA
Sbjct: 61 LNKHIWSRGIRSVPRRVRVRIA 82

[Close]

BLAST of CmoCh01G002300 vs. ExPASy TrEMBL
Match: A0A2I4EAU8 (60S ribosomal protein L31 OS=Juglans regia OX=51240 GN=LOC108987912 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.9e-32
Identity = 72/82 (87.80%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKDIKELRKFAQNAMGTTDVRVDVK 60
          M DK++K RK EVVTREYT+NLHKRLHGCTFKKKAPK IKE+RKFAQ AMGTTDVRVDVK
Sbjct: 1  MVDKASKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVK 60

Query: 61 LNKHIWSRGIRSVPRRVRGRIA 83
          LNKHIWSRGIRSVPRRVR RIA
Sbjct: 61 LNKHIWSRGIRSVPRRVRVRIA 82

[Close]

BLAST of CmoCh01G002300 vs. ExPASy TrEMBL
Match: A0A6P4A0Q9 (60S ribosomal protein L31 OS=Ziziphus jujuba OX=326968 GN=LOC107423246 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.4e-32
Identity = 72/82 (87.80%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKDIKELRKFAQNAMGTTDVRVDVK 60
          M DK++K RK EVVTREYTVNLHKRLHGCTFKKKAPK IKE+RKFAQ AMGTTDVRVDVK
Sbjct: 1  MVDKTSKGRKEEVVTREYTVNLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVK 60

Query: 61 LNKHIWSRGIRSVPRRVRGRIA 83
          LNKH+WSRGIRSVPRRVR RIA
Sbjct: 61 LNKHLWSRGIRSVPRRVRVRIA 82

[Close]

BLAST of CmoCh01G002300 vs. ExPASy TrEMBL
Match: I3NMM3 (60S ribosomal protein L31A OS=Hevea brasiliensis OX=3981 GN=RPL31A PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.4e-32
Identity = 72/82 (87.80%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKDIKELRKFAQNAMGTTDVRVDVK 60
          M +K+AK RK EVVTREYT+NLHKRLHGCTFKKKAPK IKE+RKFAQ AMGTTDVRVDVK
Sbjct: 1  MVEKAAKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVK 60

Query: 61 LNKHIWSRGIRSVPRRVRGRIA 83
          LNKHIWSRGIRSVPRRVR RIA
Sbjct: 61 LNKHIWSRGIRSVPRRVRVRIA 82

[Close]

BLAST of CmoCh01G002300 vs. ExPASy TrEMBL
Match: A0A218X1Y2 (60S ribosomal protein L31 OS=Punica granatum OX=22663 GN=LOC116211037 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.2e-32
Identity = 70/82 (85.37%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKDIKELRKFAQNAMGTTDVRVDVK 60
          MAD+ +K RK EVVTREYT+NLHKRLHGCTFKKKAPK IKE+RKFAQ AMGTTDVRVDVK
Sbjct: 1  MADRKSKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVK 60

Query: 61 LNKHIWSRGIRSVPRRVRGRIA 83
          LNKH+WSRGIRSVPRRVR R+A
Sbjct: 61 LNKHVWSRGIRSVPRRVRVRVA 82

[Close]

BLAST of CmoCh01G002300 vs. NCBI nr
Match: XP_023525745.1 (60S ribosomal protein L31-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158.3 bits (399), Expect = 2.8e-35
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKDIKELRKFAQNAMGTTDVRVDVK 60
          MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPK IKELRKFAQNAMGTTDVRVDVK
Sbjct: 1  MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQNAMGTTDVRVDVK 60

Query: 61 LNKHIWSRGIRSVPRRVRGRIA 83
          LNKHIWSRGIRSVPRRVR RIA
Sbjct: 61 LNKHIWSRGIRSVPRRVRVRIA 82

[Close]

BLAST of CmoCh01G002300 vs. NCBI nr
Match: XP_022152572.1 (60S ribosomal protein L31 [Momordica charantia])

HSP 1 Score: 154.1 bits (388), Expect = 5.3e-34
Identity = 78/82 (95.12%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKDIKELRKFAQNAMGTTDVRVDVK 60
          MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAP  IKELRKFAQ AMGTTDVRVDVK
Sbjct: 1  MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPNAIKELRKFAQKAMGTTDVRVDVK 60

Query: 61 LNKHIWSRGIRSVPRRVRGRIA 83
          LNKHIWSRGIRSVPRRVR RIA
Sbjct: 61 LNKHIWSRGIRSVPRRVRVRIA 82

[Close]

BLAST of CmoCh01G002300 vs. NCBI nr
Match: XP_038903425.1 (60S ribosomal protein L31 [Benincasa hispida])

HSP 1 Score: 153.3 bits (386), Expect = 9.1e-34
Identity = 78/82 (95.12%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKDIKELRKFAQNAMGTTDVRVDVK 60
          MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPK IKELRKFAQ AMGTTDVRVDVK
Sbjct: 1  MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQKAMGTTDVRVDVK 60

Query: 61 LNKHIWSRGIRSVPRRVRGRIA 83
          LNK+IWSRGIRSVPRRVR RIA
Sbjct: 61 LNKNIWSRGIRSVPRRVRVRIA 82

[Close]

BLAST of CmoCh01G002300 vs. NCBI nr
Match: XP_031110863.1 (60S ribosomal protein L31 [Ipomoea triloba])

HSP 1 Score: 148.3 bits (373), Expect = 2.9e-32
Identity = 72/82 (87.80%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKDIKELRKFAQNAMGTTDVRVDVK 60
          MADK +KARK EVVTREYT+NLHKRLHGCTFKKKAP  IKE+RKFAQ AMGTTDVRVDVK
Sbjct: 1  MADKGSKARKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVK 60

Query: 61 LNKHIWSRGIRSVPRRVRGRIA 83
          LNKHIWSRGIRSVPRR+R RIA
Sbjct: 61 LNKHIWSRGIRSVPRRIRVRIA 82

[Close]

BLAST of CmoCh01G002300 vs. NCBI nr
Match: XP_040995015.1 (60S ribosomal protein L31 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 147.9 bits (372), Expect = 3.8e-32
Identity = 72/82 (87.80%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKDIKELRKFAQNAMGTTDVRVDVK 60
          M DK++K RK EVVTREYT+NLHKRLHGCTFKKKAPK IKE+RKFAQ AMGTTDVRVDVK
Sbjct: 1  MVDKASKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVK 60

Query: 61 LNKHIWSRGIRSVPRRVRGRIA 83
          LNKHIWSRGIRSVPRRVR RIA
Sbjct: 61 LNKHIWSRGIRSVPRRVRVRIA 82

[Close]

BLAST of CmoCh01G002300 vs. TAIR 10
Match: AT5G56710.1 (Ribosomal protein L31e family protein )

HSP 1 Score: 124.4 bits (311), Expect = 4.2e-29
Identity = 58/76 (76.32%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 7  KARKSEVVTREYTVNLHKRLHGCTFKKKAPKDIKELRKFAQNAMGTTDVRVDVKLNKHIW 66
          K RK EV+TREYT+NLH+RLH CTFKKKAPK IKE+RKFA+ AMGT DVRVDVKLNK IW
Sbjct: 5  KGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIW 64

Query: 67 SRGIRSVPRRVRGRIA 83
          S+GIR  PRR+R R+A
Sbjct: 65 SKGIRGPPRRIRVRVA 80

[Close]

BLAST of CmoCh01G002300 vs. TAIR 10
Match: AT4G26230.1 (Ribosomal protein L31e family protein )

HSP 1 Score: 123.6 bits (309), Expect = 7.2e-29
Identity = 58/76 (76.32%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 7  KARKSEVVTREYTVNLHKRLHGCTFKKKAPKDIKELRKFAQNAMGTTDVRVDVKLNKHIW 66
          K RK EVVTREYT+NLH+RLH CTFKKKAPK IKE+RKFA+  MGT DVRVDVKLNK IW
Sbjct: 5  KGRKEEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLNKQIW 64

Query: 67 SRGIRSVPRRVRGRIA 83
          S+GIR  PRR+R R+A
Sbjct: 65 SKGIRGPPRRIRVRVA 80

[Close]

BLAST of CmoCh01G002300 vs. TAIR 10
Match: AT2G19740.1 (Ribosomal protein L31e family protein )

HSP 1 Score: 122.1 bits (305), Expect = 2.1e-28
Identity = 58/79 (73.42%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 4  KSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKDIKELRKFAQNAMGTTDVRVDVKLNK 63
          +  K RK EVVTREYT+NLH+RLH CTFKKKAP  IKE+RKFA  AMGT DVRVDVKLNK
Sbjct: 2  EKGKGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNK 61

Query: 64 HIWSRGIRSVPRRVRGRIA 83
           IWS+GIR  PRR+R R+A
Sbjct: 62 QIWSKGIRGPPRRIRVRVA 80

[Close]

BLAST of CmoCh01G002300 vs. TAIR 10
Match: AT5G56710.2 (Ribosomal protein L31e family protein )

HSP 1 Score: 89.4 bits (220), Expect = 1.5e-18
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 7  KARKSEVVTREYTVNLHKRLHGCTFKKKAPKDIKELRKFAQNAMGTTDVRVD 59
          K RK EV+TREYT+NLH+RLH CTFKKKAPK IKE+RKFA+ AMGT DVRVD
Sbjct: 5  KGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVD 56

The following BLAST results are available for this feature:

BLAST of CmoCh01G002300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M573	1.1e-34	86.59	60S ribosomal protein L31 OS=Perilla frutescens OX=48386 GN=RPL31 PE=2 SV=1	[more]
Q9MAV7	7.5e-31	83.54	60S ribosomal protein L31 OS=Panax ginseng OX=4054 GN=RPL31 PE=2 SV=1	[more]
P46290	1.3e-30	82.93	60S ribosomal protein L31 OS=Nicotiana glutinosa OX=35889 GN=RPL31 PE=2 SV=1	[more]
O65071	5.4e-29	74.68	60S ribosomal protein L31 OS=Picea mariana OX=3335 GN=RPL31 PE=2 SV=1	[more]
P51420	5.9e-28	76.32	60S ribosomal protein L31-3 OS=Arabidopsis thaliana OX=3702 GN=RPL31C PE=3 SV=2	[more]

BLAST of CmoCh01G002300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DGM1	2.6e-34	95.12	60S ribosomal protein L31 OS=Momordica charantia OX=3673 GN=LOC111020269 PE=3 SV...	[more]
A0A2I4EAU8	1.9e-32	87.80	60S ribosomal protein L31 OS=Juglans regia OX=51240 GN=LOC108987912 PE=3 SV=1	[more]
A0A6P4A0Q9	2.4e-32	87.80	60S ribosomal protein L31 OS=Ziziphus jujuba OX=326968 GN=LOC107423246 PE=3 SV=1	[more]
I3NMM3	2.4e-32	87.80	60S ribosomal protein L31A OS=Hevea brasiliensis OX=3981 GN=RPL31A PE=2 SV=1	[more]
A0A218X1Y2	3.2e-32	85.37	60S ribosomal protein L31 OS=Punica granatum OX=22663 GN=LOC116211037 PE=3 SV=1	[more]

BLAST of CmoCh01G002300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525745.1	2.8e-35	97.56	60S ribosomal protein L31-like [Cucurbita pepo subsp. pepo]	[more]
XP_022152572.1	5.3e-34	95.12	60S ribosomal protein L31 [Momordica charantia]	[more]
XP_038903425.1	9.1e-34	95.12	60S ribosomal protein L31 [Benincasa hispida]	[more]
XP_031110863.1	2.9e-32	87.80	60S ribosomal protein L31 [Ipomoea triloba]	[more]
XP_040995015.1	3.8e-32	87.80	60S ribosomal protein L31 [Juglans microcarpa x Juglans regia]	[more]

BLAST of CmoCh01G002300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56710.1	4.2e-29	76.32	Ribosomal protein L31e family protein	[more]
AT4G26230.1	7.2e-29	76.32	Ribosomal protein L31e family protein	[more]
AT2G19740.1	2.1e-28	73.42	Ribosomal protein L31e family protein	[more]
AT5G56710.2	1.5e-18	78.85	Ribosomal protein L31e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000054	Ribosomal protein L31e	SMART	SM01380	Ribosomal_L31e_2	coord: 11..82 e-value: 4.5E-30 score: 115.9
IPR000054	Ribosomal protein L31e	PFAM	PF01198	Ribosomal_L31e	coord: 12..81 e-value: 6.9E-33 score: 112.7
IPR000054	Ribosomal protein L31e	PANTHER	PTHR10956	60S RIBOSOMAL PROTEIN L31	coord: 1..82
IPR000054	Ribosomal protein L31e	CDD	cd00463	Ribosomal_L31e	coord: 10..82 e-value: 4.74349E-25 score: 86.8544
IPR023621	Ribosomal protein L31e domain superfamily	GENE3D	3.10.440.10		coord: 2..82 e-value: 1.4E-32 score: 114.0
IPR023621	Ribosomal protein L31e domain superfamily	SUPERFAMILY	54575	Ribosomal protein L31e	coord: 12..80
None	No IPR available	PANTHER	PTHR10956:SF38	OS06G0319700 PROTEIN	coord: 1..82
IPR020052	Ribosomal protein L31e, conserved site	PROSITE	PS01144	RIBOSOMAL_L31E	coord: 55..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G002300.1	CmoCh01G002300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome