CmoCh01G001620 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G001620
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	CUE domain-containing protein
Location	Cmo_Chr01: 702058 .. 703028 (+)
RNA-Seq Expression	CmoCh01G001620
Synteny	CmoCh01G001620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCGAAGAGACCATAAGAAACCTAACCCCAAAGAAACCAAAATCTTTCGTTCCCTTCTTCTTCTTCCTTTTTCCTCCTGCCCAAGCAAAAGCTCCCTTCTCCAGCCCTAACACTTCTTCCCTTTCTGTTCGTCGCCTCCTCCTTCAATCGTGTTCGAATTGGTGTTTGCTTCGGGGACGAACGGTAATTTTAGGAATTAGATTCTGCAAGCGACAACCGGGAGACGATGTCTGCAGTGGTGTGCGGAACCAAAAGATCTTTCTTTGAAGAACTACCGCCTTCGCCTCCCGTTTCCAAGCGCCTCCGCTGCTCCTCTACCACTTCTCCGATTAGATTCGCTGCGTCCTGTCTTATTGATCAGCTACAGAATTTGTTTCCTCAAATGGACCATCAGGTTTCTTCGTTCTTCCATGCCTTTTTTTTTTAATATATAATTTCGTTTTAATTTGAGAAACTGTCGCTCTCTGTTTGTTTCTGAGGTTTCCTGTTTTTTTTTTTTTTTCCTTTTCTTTTTTGTGCTTCTGTGTAATATCATATTTCTTGACAGGGTTATAACATGAATTTATTTGGGATTTTCTGAAAACAGGTGTAACCTTAGGGAAATCGTGTTATTCTCTTCGTTTTGTATATAATAGTGAAGTTATATGCGTTTTTGGGCTGTGAATTTATCAACTTATTTCGCTAAGTTGCAGTCTGAAATTGGAGGGCTTCTATTCAGTTTTAATTTGTGATGCATCTCTTTCGCTTTCTTATTTGATACTGCTAGTTTGTTTTTCCCCCAAGGTTTTCTTGATCATGGTTGAATTTTTTCCTTTCAGCTTCTTGTGAGAGTCCTTGAAGAATGTGGCAACGACTTGGATGCTGCCATCAAAAGTCTGAGTAACATGTGTTTGGGATCTACTGTTGAGAATCCTGTTGCTACTACAGCAGCAGAGACAAATTTGGACCACGGAGGTATCACATGGTGCTAA

mRNA sequence

GCCGAAGAGACCATAAGAAACCTAACCCCAAAGAAACCAAAATCTTTCGTTCCCTTCTTCTTCTTCCTTTTTCCTCCTGCCCAAGCAAAAGCTCCCTTCTCCAGCCCTAACACTTCTTCCCTTTCTGTTCGTCGCCTCCTCCTTCAATCGTGTTCGAATTGGTGTTTGCTTCGGGGACGAACGGTAATTTTAGGAATTAGATTCTGCAAGCGACAACCGGGAGACGATGTCTGCAGTGGTGTGCGGAACCAAAAGATCTTTCTTTGAAGAACTACCGCCTTCGCCTCCCGTTTCCAAGCGCCTCCGCTGCTCCTCTACCACTTCTCCGATTAGATTCGCTGCGTCCTGTCTTATTGATCAGCTACAGAATTTGTTTCCTCAAATGGACCATCAGCTTCTTGTGAGAGTCCTTGAAGAATGTGGCAACGACTTGGATGCTGCCATCAAAAGTCTGAGTAACATGTGTTTGGGATCTACTGTTGAGAATCCTGTTGCTACTACAGCAGCAGAGACAAATTTGGACCACGGAGGTATCACATGGTGCTAA

Coding sequence (CDS)

ATGTCTGCAGTGGTGTGCGGAACCAAAAGATCTTTCTTTGAAGAACTACCGCCTTCGCCTCCCGTTTCCAAGCGCCTCCGCTGCTCCTCTACCACTTCTCCGATTAGATTCGCTGCGTCCTGTCTTATTGATCAGCTACAGAATTTGTTTCCTCAAATGGACCATCAGCTTCTTGTGAGAGTCCTTGAAGAATGTGGCAACGACTTGGATGCTGCCATCAAAAGTCTGAGTAACATGTGTTTGGGATCTACTGTTGAGAATCCTGTTGCTACTACAGCAGCAGAGACAAATTTGGACCACGGAGGTATCACATGGTGCTAA

Protein sequence

MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVRVLEECGNDLDAAIKSLSNMCLGSTVENPVATTAAETNLDHGGITWC

Homology

[Close]

BLAST of CmoCh01G001620 vs. ExPASy TrEMBL
Match: A0A6J1GCX8 (uncharacterized protein LOC111452812 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452812 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.5e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR 60
           MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR
Sbjct: 1   MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR 60

Query: 61  VLEECGNDLDAAIKSLSNMCLGSTVENPVATTAAETNLDHGG 103
           VLEECGNDLDAAIKSLSNMCLGSTVENPVATTAAETNLDHGG
Sbjct: 61  VLEECGNDLDAAIKSLSNMCLGSTVENPVATTAAETNLDHGG 102

[Close]

BLAST of CmoCh01G001620 vs. ExPASy TrEMBL
Match: A0A6J1GCW0 (uncharacterized protein LOC111452812 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452812 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.2e-49
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR 60
           MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR
Sbjct: 1   MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR 60

Query: 61  VLEECGNDLDAAIKSLSNMCLGSTVENPVATTAAETNLDHG 102
           VLEECGNDLDAAIKSLSNMCLGSTVENPVATTAAETNLD G
Sbjct: 61  VLEECGNDLDAAIKSLSNMCLGSTVENPVATTAAETNLDQG 101

[Close]

BLAST of CmoCh01G001620 vs. ExPASy TrEMBL
Match: A0A6J1K7Q5 (uncharacterized protein LOC111493023 OS=Cucurbita maxima OX=3661 GN=LOC111493023 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.1e-48
Identity = 99/101 (98.02%), Postives = 99/101 (98.02%), Query Frame = 0


Query: 1   MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR 60
           MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR
Sbjct: 1   MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR 60

Query: 61  VLEECGNDLDAAIKSLSNMCLGSTVENPVATTAAETNLDHG 102
           VLEECGNDLDAAIKSLSNMCLGSTVENPVATT AETNLD G
Sbjct: 61  VLEECGNDLDAAIKSLSNMCLGSTVENPVATTPAETNLDQG 101

[Close]

BLAST of CmoCh01G001620 vs. ExPASy TrEMBL
Match: A0A0A0KVN0 (CUE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006460 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.9e-38
Identity = 81/103 (78.64%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 1   MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR 60
           MSAVVCG+KRSFFEELPPSPP++KRLRCS++TSPIRFAA   ID LQ+LFPQMD QLLVR
Sbjct: 1   MSAVVCGSKRSFFEELPPSPPIAKRLRCSTSTSPIRFAAPSHIDHLQHLFPQMDRQLLVR 60

Query: 61  VLEECGNDLDAAIKSLSNMCLGSTVENPVATTAAETNLDHGGI 104
            LEECGNDLDAAI+SLS++CLGS VENPVA+   ETNLD G I
Sbjct: 61  ALEECGNDLDAAIRSLSDLCLGSAVENPVASAEPETNLDQGSI 103

[Close]

BLAST of CmoCh01G001620 vs. ExPASy TrEMBL
Match: A0A6J1DJ22 (uncharacterized protein LOC111020986 OS=Momordica charantia OX=3673 GN=LOC111020986 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 5.0e-38
Identity = 80/101 (79.21%), Postives = 87/101 (86.14%), Query Frame = 0


Query: 1   MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR 60
           MSAVVCGTKRSFFEELPPSPP++KRLRCS++TSPIRFAA  LIDQL +LFP MDHQLL R
Sbjct: 1   MSAVVCGTKRSFFEELPPSPPIAKRLRCSTSTSPIRFAAPSLIDQLHDLFPHMDHQLLAR 60

Query: 61  VLEECGNDLDAAIKSLSNMCLGSTVENPVATTAAETNLDHG 102
            LEECGNDLDAAIK LS++CLGS  ENP AT   ETNLD G
Sbjct: 61  ALEECGNDLDAAIKCLSDLCLGSAAENPGATAEPETNLDQG 101

[Close]

BLAST of CmoCh01G001620 vs. NCBI nr
Match: XP_022949479.1 (uncharacterized protein LOC111452812 isoform X1 [Cucurbita moschata])

HSP 1 Score: 207.6 bits (527), Expect = 5.3e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR 60
           MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR
Sbjct: 1   MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR 60

Query: 61  VLEECGNDLDAAIKSLSNMCLGSTVENPVATTAAETNLDHGG 103
           VLEECGNDLDAAIKSLSNMCLGSTVENPVATTAAETNLDHGG
Sbjct: 61  VLEECGNDLDAAIKSLSNMCLGSTVENPVATTAAETNLDHGG 102

[Close]

BLAST of CmoCh01G001620 vs. NCBI nr
Match: KAG6606811.1 (hypothetical protein SDJN03_00153, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 202.6 bits (514), Expect = 1.7e-48
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR 60
           MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR
Sbjct: 1   MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR 60

Query: 61  VLEECGNDLDAAIKSLSNMCLGSTVENPVATTAAETNLDHG 102
           VLEECGNDLDAAIKSLSNMCLGSTVENPVATTAAETNLD G
Sbjct: 61  VLEECGNDLDAAIKSLSNMCLGSTVENPVATTAAETNLDQG 101

[Close]

BLAST of CmoCh01G001620 vs. NCBI nr
Match: XP_023525880.1 (uncharacterized protein LOC111789361 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 202.6 bits (514), Expect = 1.7e-48
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR 60
           MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR
Sbjct: 1   MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR 60

Query: 61  VLEECGNDLDAAIKSLSNMCLGSTVENPVATTAAETNLDHG 102
           VLEECGNDLDAAIKSLSNMCLGSTVENPVATTAAETNLD G
Sbjct: 61  VLEECGNDLDAAIKSLSNMCLGSTVENPVATTAAETNLDQG 101

[Close]

BLAST of CmoCh01G001620 vs. NCBI nr
Match: KAG7036518.1 (hypothetical protein SDJN02_00136, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 202.6 bits (514), Expect = 1.7e-48
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR 60
           MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR
Sbjct: 1   MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR 60

Query: 61  VLEECGNDLDAAIKSLSNMCLGSTVENPVATTAAETNLDHG 102
           VLEECGNDLDAAIKSLSNMCLGSTVENPVATTAAETNLD G
Sbjct: 61  VLEECGNDLDAAIKSLSNMCLGSTVENPVATTAAETNLDQG 101

[Close]

BLAST of CmoCh01G001620 vs. NCBI nr
Match: XP_022949480.1 (uncharacterized protein LOC111452812 isoform X2 [Cucurbita moschata])

HSP 1 Score: 202.6 bits (514), Expect = 1.7e-48
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR 60
           MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR
Sbjct: 1   MSAVVCGTKRSFFEELPPSPPVSKRLRCSSTTSPIRFAASCLIDQLQNLFPQMDHQLLVR 60

Query: 61  VLEECGNDLDAAIKSLSNMCLGSTVENPVATTAAETNLDHG 102
           VLEECGNDLDAAIKSLSNMCLGSTVENPVATTAAETNLD G
Sbjct: 61  VLEECGNDLDAAIKSLSNMCLGSTVENPVATTAAETNLDQG 101

[Close]

BLAST of CmoCh01G001620 vs. TAIR 10
Match: AT5G32440.1 (Ubiquitin system component Cue protein )

HSP 1 Score: 87.8 bits (216), Expect = 5.7e-18
Identity = 50/99 (50.51%), Postives = 68/99 (68.69%), Query Frame = 0


Query: 1  MSAVVCGTKRSFFEEL-PPSPPVSKRLRCSSTTSPIRF------AASCLIDQLQNLFPQM 60
          MSA+VCG KRS FE+L   SPPVSK+LRC S++S  RF      ++S L+D L  +FP M
Sbjct: 1  MSAIVCG-KRSLFEDLAAASPPVSKKLRCFSSSSSSRFSPPIPPSSSLLLDHLAAIFPDM 60

Query: 61 DHQLLVRVLEECGNDLDAAIKSLSNMCLGSTVENPVATT 93
          D Q+L R +EECG+DLD+AI+ L+ + L S  +N  + T
Sbjct: 61 DKQILERAIEECGDDLDSAIRCLNQLRLESANKNSDSAT 98

[Close]

BLAST of CmoCh01G001620 vs. TAIR 10
Match: AT5G32440.2 (Ubiquitin system component Cue protein )

HSP 1 Score: 87.8 bits (216), Expect = 5.7e-18
Identity = 50/99 (50.51%), Postives = 68/99 (68.69%), Query Frame = 0


Query: 1  MSAVVCGTKRSFFEEL-PPSPPVSKRLRCSSTTSPIRF------AASCLIDQLQNLFPQM 60
          MSA+VCG KRS FE+L   SPPVSK+LRC S++S  RF      ++S L+D L  +FP M
Sbjct: 1  MSAIVCG-KRSLFEDLAAASPPVSKKLRCFSSSSSSRFSPPIPPSSSLLLDHLAAIFPDM 60

Query: 61 DHQLLVRVLEECGNDLDAAIKSLSNMCLGSTVENPVATT 93
          D Q+L R +EECG+DLD+AI+ L+ + L S  +N  + T
Sbjct: 61 DKQILERAIEECGDDLDSAIRCLNQLRLESANKNSDSAT 98

[Close]

BLAST of CmoCh01G001620 vs. TAIR 10
Match: AT5G32440.3 (Ubiquitin system component Cue protein )

HSP 1 Score: 87.8 bits (216), Expect = 5.7e-18
Identity = 50/99 (50.51%), Postives = 68/99 (68.69%), Query Frame = 0


Query: 1  MSAVVCGTKRSFFEEL-PPSPPVSKRLRCSSTTSPIRF------AASCLIDQLQNLFPQM 60
          MSA+VCG KRS FE+L   SPPVSK+LRC S++S  RF      ++S L+D L  +FP M
Sbjct: 1  MSAIVCG-KRSLFEDLAAASPPVSKKLRCFSSSSSSRFSPPIPPSSSLLLDHLAAIFPDM 60

Query: 61 DHQLLVRVLEECGNDLDAAIKSLSNMCLGSTVENPVATT 93
          D Q+L R +EECG+DLD+AI+ L+ + L S  +N  + T
Sbjct: 61 DKQILERAIEECGDDLDSAIRCLNQLRLESANKNSDSAT 98

[Close]

BLAST of CmoCh01G001620 vs. TAIR 10
Match: AT1G80040.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: Ubiquitin system component Cue protein (TAIR:AT5G32440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 68.9 bits (167), Expect = 2.7e-12
Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = 0


Query: 1  MSAVVCGTKRSFFEELPPSPPVSKRLRC-SSTTSPI-RFAASCLIDQLQNLFPQMDHQLL 60
          MSAV CGTKRS+F++   SPP SKR RC S + SPI     S  +DQL + FP ++  +L
Sbjct: 1  MSAVYCGTKRSYFDD-NSSPPSSKRFRCFSPSNSPIWSSPPSSSLDQLHSAFPHIELTVL 60

Query: 61 VRVLEECGNDLDAAIKSL 77
          V+ LE+ G+D +AA+KSL
Sbjct: 61 VKALEDNGSDFNAAMKSL 77

[Close]

BLAST of CmoCh01G001620 vs. TAIR 10
Match: AT1G80040.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: Ubiquitin system component Cue protein (TAIR:AT5G32440.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 68.9 bits (167), Expect = 2.7e-12
Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = 0


Query: 1  MSAVVCGTKRSFFEELPPSPPVSKRLRC-SSTTSPI-RFAASCLIDQLQNLFPQMDHQLL 60
          MSAV CGTKRS+F++   SPP SKR RC S + SPI     S  +DQL + FP ++  +L
Sbjct: 1  MSAVYCGTKRSYFDD-NSSPPSSKRFRCFSPSNSPIWSSPPSSSLDQLHSAFPHIELTVL 60

Query: 61 VRVLEECGNDLDAAIKSL 77
          V+ LE+ G+D +AA+KSL
Sbjct: 61 VKALEDNGSDFNAAMKSL 77

The following BLAST results are available for this feature:

BLAST of CmoCh01G001620 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G001620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GCX8	2.5e-50	100.00	uncharacterized protein LOC111452812 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GCW0	8.2e-49	99.01	uncharacterized protein LOC111452812 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1K7Q5	3.1e-48	98.02	uncharacterized protein LOC111493023 OS=Cucurbita maxima OX=3661 GN=LOC111493023...	[more]
A0A0A0KVN0	2.9e-38	78.64	CUE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006460 PE=4 SV...	[more]
A0A6J1DJ22	5.0e-38	79.21	uncharacterized protein LOC111020986 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]

BLAST of CmoCh01G001620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949479.1	5.3e-50	100.00	uncharacterized protein LOC111452812 isoform X1 [Cucurbita moschata]	[more]
KAG6606811.1	1.7e-48	99.01	hypothetical protein SDJN03_00153, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023525880.1	1.7e-48	99.01	uncharacterized protein LOC111789361 [Cucurbita pepo subsp. pepo]	[more]
KAG7036518.1	1.7e-48	99.01	hypothetical protein SDJN02_00136, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022949480.1	1.7e-48	99.01	uncharacterized protein LOC111452812 isoform X2 [Cucurbita moschata]	[more]

BLAST of CmoCh01G001620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G32440.1	5.7e-18	50.51	Ubiquitin system component Cue protein	[more]
AT5G32440.2	5.7e-18	50.51	Ubiquitin system component Cue protein	[more]
AT5G32440.3	5.7e-18	50.51	Ubiquitin system component Cue protein	[more]
AT1G80040.1	2.7e-12	51.28	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G80040.2	2.7e-12	51.28	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003892	Ubiquitin system component CUE	SMART	SM00546	cue_7	coord: 38..80 e-value: 0.0093 score: 25.2
IPR003892	Ubiquitin system component CUE	PFAM	PF02845	CUE	coord: 43..79 e-value: 5.0E-9 score: 35.7
IPR003892	Ubiquitin system component CUE	PROSITE	PS51140	CUE	coord: 38..84 score: 13.310432
None	No IPR available	GENE3D	1.10.8.10		coord: 40..82 e-value: 1.5E-8 score: 36.1
None	No IPR available	PANTHER	PTHR31245:SF24	UBIQUITIN SYSTEM COMPONENT CUE PROTEIN	coord: 1..95
None	No IPR available	PANTHER	PTHR31245	UBIQUITIN SYSTEM COMPONENT CUE PROTEIN	coord: 1..95
None	No IPR available	CDD	cd14279	CUE	coord: 42..76 e-value: 6.22562E-12 score: 53.6261
IPR009060	UBA-like superfamily	SUPERFAMILY	46934	UBA-like	coord: 42..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G001620.1	CmoCh01G001620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0043130	ubiquitin binding
molecular_function	GO:0005515	protein binding