CmoCh01G000750 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G000750
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	60S ribosomal protein L28-2-like
Location	Cmo_Chr01: 334540 .. 336407 (-)
RNA-Seq Expression	CmoCh01G000750
Synteny	CmoCh01G000750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTGCCCATCCGAGTTTCTGAGACAAACCCTAAAGTTCATCAGGTCTCTGCATTTCTAAACGATTTCTTTTGAATGCATTTTTTTGTCTGATCTCGAAACAATAACATTCATATGTATGTTTTACTCTTGCTAAACTAACTTCGAAGATATTGTTTCATCGTGTTGCAGGGCGACAAGAAGATCATGGCGGCGGTTCCAGGACAATTGATTTGGGAGATTGTGAAGAGGAACAACTCGTTTTTGGTCAAGGAGTTTGGGAGGGGAACAGCCGGCGTTCAGTTCAGCAAAGAGTCTAACAACTTATACAATTTGAACTCCTACAAACATTCTGGTAAGTCATCTCAAATCCTCTGATGAATTGATTTTTTTTTTTTTTCATGTCAAGAAAAATGCTAGTGGATTAAGTTTTGGGGGTTTTATTGAAATGTCGGAACGATCCGGAGACGAGATCATAGGTATATTATATCGTTGTTATTTTGAGGTTTGTGTATGACTTTTCTTTTGGAGCAAAGGAATTATGTACAGGAAATTTAAATAGTTAATGTTATCTGATTGTATTCTGTCTGCCAAGGACCTAAGAAGATGCTTGGTTTATGATATGGAAACTGGATGCTCTTATCAATTGGTGATTATATTCTAGATATACATGTTCATGCTTCATACATTCTGGATTCGGCGGGAGGGAACATAAAACTGATGTTTAGGATGTTAATCATGTGAAATTGTTTTAACTATCATCCCTGTTTCTTCTCTTTTGATTTTTCTTTTTTTAGATTGAAGATAATATTGCAGATAGTGAATAATGTATATGCATAGAGATTAAATAAGATTCTTGTGTTTTAGGTTTGGCCAACAAGAAAACTGTTACGATTCAACCTGGAGGCAAAGACCAATCCATTTTGTTTGCAACAACTAAGAGCAAGAAACAGAACAAGCCTTCTTCGTTGCTTCATAAATCATTAATGAAGAAAGAGTTCCGTAGGATGGCCAAAGCTGTAACAAATCAGGTAATTTTAAAGGTTCAGGCATTCAATGTCTTGTTTCGGCTCCCACCCCCCTTATCGCCGGCAATAAAACTACAATTGTGGCACATACCTTAGGCTAAGTAATATGACTATCTTTCGAGTACTTCTCCTACAAATATACTTTGTACGGCCCCCCTTATCGCCGGCAATAAAACTACAACTGTGGCACATACCTTAAGCCAAGTAATATATCTAGCTTTGAGTACTTTTGCTGCGAATTTACTTTGAATGGTTGGAACCCTTCTGTCCCAATGATATGCAGGTGGGAGATAACTACTACAGGCCAGATCTGAAGAGGGATGCCCTTGCAAGATTGAGTGCTGTGAACAGGAGCCTTAAGGTGGCCAAGTCTGGCGTAAAGAAGAGGAACAGGCAAGCGTTGAAATCACGTGGAAGGAAGTGAGAATTGAGCTAGTAGAGAATGAGATTGTTGCATTTTTCATTGTGTTTTCTTTTGGAATGCCAACTTTGTAGTTCGGTTTGGAATCTGAAGGAGGAGTAGTAGTCTGGCAATAGATGTTTTGCTATGTTTTGCGTTACTATAATGGTTATTTTCATGTTGAGGTTAACTCTTTGCTGGTAATCTCAAGACTTTGTTTTGGTTATGTTGCTAAATGCAGCTGAAAATTACCAGATACTTTATTATTCTTCACCATGACTCCCTAAAATGATTGTACGGCAATACACTTCTATTCTCATCTCATGCGCTCAATCCAAACGAAACGACTCCTTAAATCAATTGCCAACATTAGTTTCTAGTCCAATGTAATGTACGCATTTTACTTATTTTTTAGAGCCTACATTGACCAAGAGAAGAAACTTGTTACAGGTCCACTATAG

mRNA sequence

ATTTTGCCCATCCGAGTTTCTGAGACAAACCCTAAAGTTCATCAGGGCGACAAGAAGATCATGGCGGCGGTTCCAGGACAATTGATTTGGGAGATTGTGAAGAGGAACAACTCGTTTTTGGTCAAGGAGTTTGGGAGGGGAACAGCCGGCGTTCAGTTCAGCAAAGAGTCTAACAACTTATACAATTTGAACTCCTACAAACATTCTGGTTTGGCCAACAAGAAAACTGTTACGATTCAACCTGGAGGCAAAGACCAATCCATTTTGTTTGCAACAACTAAGAGCAAGAAACAGAACAAGCCTTCTTCGTTGCTTCATAAATCATTAATGAAGAAAGAGTTCCGTAGGATGGCCAAAGCTGTAACAAATCAGGTGGGAGATAACTACTACAGGCCAGATCTGAAGAGGGATGCCCTTGCAAGATTGAGTGCTGTGAACAGGAGCCTTAAGGTGGCCAAGTCTGGCGTAAAGAAGAGGAACAGGCAAGCGTTGAAATCACGTGGAAGGAAAGCCTACATTGACCAAGAGAAGAAACTTGTTACAGGTCCACTATAG

Coding sequence (CDS)

ATGGCGGCGGTTCCAGGACAATTGATTTGGGAGATTGTGAAGAGGAACAACTCGTTTTTGGTCAAGGAGTTTGGGAGGGGAACAGCCGGCGTTCAGTTCAGCAAAGAGTCTAACAACTTATACAATTTGAACTCCTACAAACATTCTGGTTTGGCCAACAAGAAAACTGTTACGATTCAACCTGGAGGCAAAGACCAATCCATTTTGTTTGCAACAACTAAGAGCAAGAAACAGAACAAGCCTTCTTCGTTGCTTCATAAATCATTAATGAAGAAAGAGTTCCGTAGGATGGCCAAAGCTGTAACAAATCAGGTGGGAGATAACTACTACAGGCCAGATCTGAAGAGGGATGCCCTTGCAAGATTGAGTGCTGTGAACAGGAGCCTTAAGGTGGCCAAGTCTGGCGTAAAGAAGAGGAACAGGCAAGCGTTGAAATCACGTGGAAGGAAAGCCTACATTGACCAAGAGAAGAAACTTGTTACAGGTCCACTATAG

Protein sequence

MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQPGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALARLSAVNRSLKVAKSGVKKRNRQALKSRGRKAYIDQEKKLVTGPL

Homology

[Close]

BLAST of CmoCh01G000750 vs. ExPASy Swiss-Prot
Match: Q9M0E2 (60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 5.7e-54
Identity = 106/143 (74.13%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVKRNN FLVK+FGRG A VQFSKESNNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
             GKDQ ++  TTK+K+QNKP   ++KS++KKEF RM+K V NQV DNYYRPDLK+ ALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of CmoCh01G000750 vs. ExPASy Swiss-Prot
Match: O82204 (60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.8e-52
Identity = 104/143 (72.73%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK NN FLVK+FGRG + VQFSKE+NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
              KDQ+++ ATTK+KKQNKP   ++KS++KKEF RM+KAV NQV DNYYRPDLK+ ALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of CmoCh01G000750 vs. ExPASy Swiss-Prot
Match: O14069 (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl44 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-12
Identity = 46/135 (34.07%), Postives = 73/135 (54.07%), Query Frame = 0


Query: 3   AVPGQLIWEIVKRNNSFLVK--EFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 62
           +V   LIW++++ NN FLVK  EFG    G+QF++E  N+   N+ + SGL N K V +Q
Sbjct: 2   SVSNDLIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQ 61

Query: 63  PGGKDQSILFATTKSKKQNKPSSLLHKSLM-KKEFRRMAKAVTNQVGDNYYRPDLKRDAL 122
                  +L   T  K   KP+ L  K ++     R+  K++  ++G   YR DL + ++
Sbjct: 62  ANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSV 121

Query: 123 ARLSAVNRSLKVAKS 135
           AR SA+  S +  K+
Sbjct: 122 ARASAILSSQRPKKT 132

[Close]

BLAST of CmoCh01G000750 vs. ExPASy Swiss-Prot
Match: Q962T2 (60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-11
Identity = 46/127 (36.22%), Postives = 65/127 (51.18%), Query Frame = 0


Query: 8   LIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQPGGKDQS 67
           L W I++ NN+FLVK   +      FSKE NN+ NLNSY+++GL  KK V +      + 
Sbjct: 5   LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKG 64

Query: 68  ILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALARLSAVNR 127
                 K+K  NKP+    +   K   RR    V   +  N+YR DL +  L R SA+ R
Sbjct: 65  FTVVYKKAKATNKPAKNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAILR 124

Query: 128 SLKVAKS 135
           S +  K+
Sbjct: 125 SQRPIKA 128

[Close]

BLAST of CmoCh01G000750 vs. ExPASy Swiss-Prot
Match: P46779 (60S ribosomal protein L28 OS=Homo sapiens OX=9606 GN=RPL28 PE=1 SV=3)

HSP 1 Score: 67.0 bits (162), Expect = 2.2e-10
Identity = 42/139 (30.22%), Postives = 75/139 (53.96%), Query Frame = 0


Query: 8   LIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQPGGKDQS 67
           L W +V+  +SFL+K   +      +S E NNL   NS++++GL ++KTV ++P    + 
Sbjct: 5   LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 64

Query: 68  ILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALARLSAVNR 127
           ++    +   Q KP++   ++ + K  R    ++ + +  N YRPDL+  A+ R SA+ R
Sbjct: 65  VVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 124

Query: 128 SLKVAKSGVKKRNRQALKS 147
           S K     VK++  +  KS
Sbjct: 125 SQKPVM--VKRKRTRPTKS 136

[Close]

BLAST of CmoCh01G000750 vs. ExPASy TrEMBL
Match: A0A6J1K7P5 (60S ribosomal protein L28-2-like OS=Cucurbita maxima OX=3661 GN=LOC111493014 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.0e-74
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
           PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA
Sbjct: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSRGRK 151
           RLSAVNRSLKVAKSGVKKRNRQALKSRGRK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSRGRK 150

[Close]

BLAST of CmoCh01G000750 vs. ExPASy TrEMBL
Match: A0A6J1GC99 (60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111452830 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.0e-74
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
           PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA
Sbjct: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSRGRK 151
           RLSAVNRSLKVAKSGVKKRNRQALKSRGRK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSRGRK 150

[Close]

BLAST of CmoCh01G000750 vs. ExPASy TrEMBL
Match: A0A1S3BIE3 (60S ribosomal protein L28-2-like OS=Cucumis melo OX=3656 GN=LOC103490001 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 4.9e-69
Identity = 141/147 (95.92%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
           PGGKDQSIL ATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSR 148
           RLSAVNRSLKVAKSGVKKRNRQALKS+
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSK 147

[Close]

BLAST of CmoCh01G000750 vs. ExPASy TrEMBL
Match: A0A5D3BXS0 (60S ribosomal protein L28-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001760 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 4.9e-69
Identity = 141/147 (95.92%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
           PGGKDQSIL ATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSR 148
           RLSAVNRSLKVAKSGVKKRNRQALKS+
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSK 147

[Close]

BLAST of CmoCh01G000750 vs. ExPASy TrEMBL
Match: A0A0A0LIG3 (Ribosomal_L28e domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G849920 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.4e-68
Identity = 140/147 (95.24%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE+NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
           PGGKDQSIL ATTKSKKQNKPSS LHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSR 148
           RLSAVNRSLKVAKSGVKKRNRQALKS+
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSK 147

[Close]

BLAST of CmoCh01G000750 vs. NCBI nr
Match: XP_022949503.1 (60S ribosomal protein L28-2-like [Cucurbita moschata] >XP_022998347.1 60S ribosomal protein L28-2-like [Cucurbita maxima] >XP_023523885.1 60S ribosomal protein L28-2-like [Cucurbita pepo subsp. pepo] >KAG7036445.1 60S ribosomal protein L28-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 287.7 bits (735), Expect = 6.2e-74
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
           PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA
Sbjct: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSRGRK 151
           RLSAVNRSLKVAKSGVKKRNRQALKSRGRK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSRGRK 150

[Close]

BLAST of CmoCh01G000750 vs. NCBI nr
Match: KAG6606729.1 (hypothetical protein SDJN03_00071, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 287.7 bits (735), Expect = 6.2e-74
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1    MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
            MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1464 MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 1523

Query: 61   PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
            PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA
Sbjct: 1524 PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 1583

Query: 121  RLSAVNRSLKVAKSGVKKRNRQALKSRGRK 151
            RLSAVNRSLKVAKSGVKKRNRQALKSRGRK
Sbjct: 1584 RLSAVNRSLKVAKSGVKKRNRQALKSRGRK 1613

[Close]

BLAST of CmoCh01G000750 vs. NCBI nr
Match: XP_038886678.1 (60S ribosomal protein L28-2-like [Benincasa hispida])

HSP 1 Score: 273.5 bits (698), Expect = 1.2e-69
Identity = 144/150 (96.00%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
           PGGKDQSIL ATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSRGRK 151
           RLSAVNRSLKVAKSGVKKRNRQALKS  RK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSNVRK 150

[Close]

BLAST of CmoCh01G000750 vs. NCBI nr
Match: XP_008447584.1 (PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447585.1 PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447586.1 PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >KAA0061117.1 60S ribosomal protein L28-2-like [Cucumis melo var. makuwa] >TYK03788.1 60S ribosomal protein L28-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 270.4 bits (690), Expect = 1.0e-68
Identity = 141/147 (95.92%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
           PGGKDQSIL ATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSR 148
           RLSAVNRSLKVAKSGVKKRNRQALKS+
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSK 147

[Close]

BLAST of CmoCh01G000750 vs. NCBI nr
Match: XP_004146830.1 (60S ribosomal protein L28-2 [Cucumis sativus] >KGN59836.1 hypothetical protein Csa_000918 [Cucumis sativus])

HSP 1 Score: 268.9 bits (686), Expect = 3.0e-68
Identity = 140/147 (95.24%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE+NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
           PGGKDQSIL ATTKSKKQNKPSS LHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSR 148
           RLSAVNRSLKVAKSGVKKRNRQALKS+
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSK 147

[Close]

BLAST of CmoCh01G000750 vs. TAIR 10
Match: AT4G29410.1 (Ribosomal L28e protein family )

HSP 1 Score: 211.8 bits (538), Expect = 4.0e-55
Identity = 106/143 (74.13%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVKRNN FLVK+FGRG A VQFSKESNNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
             GKDQ ++  TTK+K+QNKP   ++KS++KKEF RM+K V NQV DNYYRPDLK+ ALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of CmoCh01G000750 vs. TAIR 10
Match: AT4G29410.2 (Ribosomal L28e protein family )

HSP 1 Score: 211.8 bits (538), Expect = 4.0e-55
Identity = 106/143 (74.13%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVKRNN FLVK+FGRG A VQFSKESNNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
             GKDQ ++  TTK+K+QNKP   ++KS++KKEF RM+K V NQV DNYYRPDLK+ ALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of CmoCh01G000750 vs. TAIR 10
Match: AT2G19730.1 (Ribosomal L28e protein family )

HSP 1 Score: 206.8 bits (525), Expect = 1.3e-53
Identity = 104/143 (72.73%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK NN FLVK+FGRG + VQFSKE+NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
              KDQ+++ ATTK+KKQNKP   ++KS++KKEF RM+KAV NQV DNYYRPDLK+ ALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of CmoCh01G000750 vs. TAIR 10
Match: AT2G19730.2 (Ribosomal L28e protein family )

HSP 1 Score: 206.8 bits (525), Expect = 1.3e-53
Identity = 104/143 (72.73%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK NN FLVK+FGRG + VQFSKE+NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
              KDQ+++ ATTK+KKQNKP   ++KS++KKEF RM+KAV NQV DNYYRPDLK+ ALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of CmoCh01G000750 vs. TAIR 10
Match: AT2G19730.3 (Ribosomal L28e protein family )

HSP 1 Score: 206.8 bits (525), Expect = 1.3e-53
Identity = 104/143 (72.73%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK NN FLVK+FGRG + VQFSKE+NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
              KDQ+++ ATTK+KKQNKP   ++KS++KKEF RM+KAV NQV DNYYRPDLK+ ALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

The following BLAST results are available for this feature:

BLAST of CmoCh01G000750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0E2	5.7e-54	74.13	60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1	[more]
O82204	1.8e-52	72.73	60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1	[more]
O14069	1.4e-12	34.07	Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe (strain 972 / A...	[more]
Q962T2	2.0e-11	36.22	60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1	[more]
P46779	2.2e-10	30.22	60S ribosomal protein L28 OS=Homo sapiens OX=9606 GN=RPL28 PE=1 SV=3	[more]

BLAST of CmoCh01G000750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K7P5	3.0e-74	100.00	60S ribosomal protein L28-2-like OS=Cucurbita maxima OX=3661 GN=LOC111493014 PE=...	[more]
A0A6J1GC99	3.0e-74	100.00	60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111452830 P...	[more]
A0A1S3BIE3	4.9e-69	95.92	60S ribosomal protein L28-2-like OS=Cucumis melo OX=3656 GN=LOC103490001 PE=3 SV...	[more]
A0A5D3BXS0	4.9e-69	95.92	60S ribosomal protein L28-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A0A0LIG3	1.4e-68	95.24	Ribosomal_L28e domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G849...	[more]

BLAST of CmoCh01G000750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949503.1	6.2e-74	100.00	60S ribosomal protein L28-2-like [Cucurbita moschata] >XP_022998347.1 60S riboso...	[more]
KAG6606729.1	6.2e-74	100.00	hypothetical protein SDJN03_00071, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038886678.1	1.2e-69	96.00	60S ribosomal protein L28-2-like [Benincasa hispida]	[more]
XP_008447584.1	1.0e-68	95.92	PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447585.1 PREDI...	[more]
XP_004146830.1	3.0e-68	95.24	60S ribosomal protein L28-2 [Cucumis sativus] >KGN59836.1 hypothetical protein C...	[more]

BLAST of CmoCh01G000750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29410.1	4.0e-55	74.13	Ribosomal L28e protein family	[more]
AT4G29410.2	4.0e-55	74.13	Ribosomal L28e protein family	[more]
AT2G19730.1	1.3e-53	72.73	Ribosomal L28e protein family	[more]
AT2G19730.2	1.3e-53	72.73	Ribosomal L28e protein family	[more]
AT2G19730.3	1.3e-53	72.73	Ribosomal L28e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.390.110		coord: 6..133 e-value: 6.6E-43 score: 148.1
None	No IPR available	PANTHER	PTHR10544:SF19	60S RIBOSOMAL PROTEIN L28-1-LIKE	coord: 1..150
IPR029004	Ribosomal L28e/Mak16	PFAM	PF01778	Ribosomal_L28e	coord: 8..128 e-value: 2.1E-34 score: 118.7
IPR002672	Ribosomal protein L28e	PANTHER	PTHR10544	60S RIBOSOMAL PROTEIN L28	coord: 1..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G000750.1	CmoCh01G000750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome