CmoCh01G000650 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G000650
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	mediator of RNA polymerase II transcription subunit 9-like
Location	Cmo_Chr01: 264884 .. 267030 (+)
RNA-Seq Expression	CmoCh01G000650
Synteny	CmoCh01G000650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTAAGTACAGTAGGGCGATCGGAGTCCGTGGAGAACTAACCGGAGCTTGAGCAAAAGCCTCTAGTCCCAAACAATCGCAAGCCCTAGCAAGAAATCGGCGATATGGATTTCTCTGGAGGAGGAAACTGGAGCATGATCCCCAACATCCCTACTCTCAGCAACTCCTCTAATCTTTCCAATCAAGAATCCCTTTACCTTCAACAGCAGCAATTCTCCCTTCAGCAGCAGCAGCAGCAGCAACAACAGCAACTATCCTTTCACCACCAGCCACAGCAATTCCAGCCCCAAATTCAACCCCAACAGCAATTTCAGCAGCAACAATCCTCCCCCCAATTTCAACAGCTACAACCCTCTCCTCAAATTCAGCCCCAACAACAACTCTCCACCCAATTCCAGCAGCAAATGCAACCCCAACATTTCCCCCAGCAGCAGCAGCAGCAACAACAACAACAACAGCAATATCATTTTCAACAACAACAGCAGCGCCTTCTTCAACAGCAGCAGCAGCAACAGAAACAGCAGCAATATCATCAACACCAGTCTCTGGCTTCCCATTTTCATCTATTTCATGTAATGTCTTCAGAAACCCCTTAATTTTGAGTGCTCTCTAATCTCCGTGTTTTGCGTTTGTTGACTTTCTTGGATGTTTTGTGTGTTGTAGCTTGTGGAGAAATTAGCGGATGCGATTGAGACTGGAGTTAGAGATCAGCAATCGGATGCATTGGTATCAATTTTGATTCTTTTTTGAAATTTTCTCTCAAGATTAATCATACCGTTGTTTCCTCTAATAATTTGTTCATTTAACGTTTTGGAAGGTCAATGATCTGAACAACCACTTTGAGAAGTGCCAGCAACTGTTAAACTCGATATCTGGATCACTCAGCTCAAAGGCTATGGTAAAGTTGAAATGACAAATCCATCACTACAAATGAGATATCACAATTTTTTTTCTTTTTCATCTTTTGGTTGCAGACAGTAGAGGGACAGAAGAAGAAGCTGGAAGAACATGAGCAGTTGTTAAGTTATCGAAGGTATGGTGGTAACCAATTTTTGGCTGTGGTTTGCATTAAACTGTCTTCTTCATCAATGGTCCTACTGATGATTCTCTATTAAAAAAGGGAACTGATTGGCAAATATAAGAGCTCCGTTGAAGAGCTTGGCAAGGGCGAGCCTTAGCTACTTCTCACCCATTCCTAATTAGGTAATACTTCAATTTATATTTACAGTTTCTTTTCCGCTTATCTCAATTGTCCAAGGTTCTGTTTGGCTTTCCTTTTCTATGTTGTCATCTTTTGCTAAATGGTTTGGTTGTGGGGTTGAAATTGAAAAGTGGTCATCAGGAAAGAAATTCACACACCAAAACATAAATTATTGTACGAATATGAGCTTTCTGTTCAGAAAGGCTAAGATTAGTTTTTGTACATTCTCAACACTAAATGTTGTTTAGGTATCACCTTAGGACTGAGTTGAGGGTCATAGCGTTTCTGGTCTAAAAGTGGGTTCGAAGTTGAATACAATTCAACATTCGAGATTGTGTGTTGTATTGTTCTAGATGTCTTAGGTGTTAGCTGCATAAATAGTCAATCCACACTTTTTGTCGACATGTTTTCGGATGCGAGAAAAAGGAACGTAGAGTTACATTTCGGAGAGAGTAAACCAACTTGTATATGGATATGAATTTTCAATCGATTCAACGCCATCTGTGCGTTCCTTCAATTTTGGTTCAAAATCATTTAAATTGTCTCTTATCAAAAGAAAGGAAAAAGAAACTTGAAGTACATACTTATGAATTCTACACCATTTCAGGCCTGGCTAGCATCATGTACCTGTTTTGAAGGGATGTGAAAAGAGCTGCTTTCACCGGGTCTTGCAATTCCATGGAGGGGCTTTTATCTAATCTGCCTCCCTGCATTTCATAACACGATGATATGATGCACAGTTGAATTCAATCCTCTCTGTTCTCTTCGACTTTTTCAGGAACTCATGTTACCTCTAACGTATCTTGTACAGTTATTCCAACAGTTAACTTCTAAAATTAATGAACAGTAGATGCTTTCTCTAGCTTTCATTCTTTTAAATGTTAAATTTGGATTTGGATTTGGATTGATGCGAATATTAAGTTATAAAACATCATGAAGCTTGACCC

mRNA sequence

TGTAAGTACAGTAGGGCGATCGGAGTCCGTGGAGAACTAACCGGAGCTTGAGCAAAAGCCTCTAGTCCCAAACAATCGCAAGCCCTAGCAAGAAATCGGCGATATGGATTTCTCTGGAGGAGGAAACTGGAGCATGATCCCCAACATCCCTACTCTCAGCAACTCCTCTAATCTTTCCAATCAAGAATCCCTTTACCTTCAACAGCAGCAATTCTCCCTTCAGCAGCAGCAGCAGCAGCAACAACAGCAACTATCCTTTCACCACCAGCCACAGCAATTCCAGCCCCAAATTCAACCCCAACAGCAATTTCAGCAGCAACAATCCTCCCCCCAATTTCAACAGCTACAACCCTCTCCTCAAATTCAGCCCCAACAACAACTCTCCACCCAATTCCAGCAGCAAATGCAACCCCAACATTTCCCCCAGCAGCAGCAGCAGCAACAACAACAACAACAGCAATATCATTTTCAACAACAACAGCAGCGCCTTCTTCAACAGCAGCAGCAGCAACAGAAACAGCAGCAATATCATCAACACCAGTCTCTGGCTTCCCATTTTCATCTATTTCATCTTGTGGAGAAATTAGCGGATGCGATTGAGACTGGAGTTAGAGATCAGCAATCGGATGCATTGGTCAATGATCTGAACAACCACTTTGAGAAGTGCCAGCAACTGTTAAACTCGATATCTGGATCACTCAGCTCAAAGGCTATGACAGTAGAGGGACAGAAGAAGAAGCTGGAAGAACATGAGCAGTTGTTAAGTTATCGAAGGGAACTGATTGGCAAATATAAGAGCTCCGTTGAAGAGCTTGGCAAGGGCGAGCCTTAGCTACTTCTCACCCATTCCTAATTAGGCCTGGCTAGCATCATGTACCTGTTTTGAAGGGATGTGAAAAGAGCTGCTTTCACCGGGTCTTGCAATTCCATGGAGGGGCTTTTATCTAATCTGCCTCCCTGCATTTCATAACACGATGATATGATGCACAGTTGAATTCAATCCTCTCTGTTCTCTTCGACTTTTTCAGGAACTCATGTTACCTCTAACGTATCTTGTACAGTTATTCCAACAGTTAACTTCTAAAATTAATGAACAGTAGATGCTTTCTCTAGCTTTCATTCTTTTAAATGTTAAATTTGGATTTGGATTTGGATTGATGCGAATATTAAGTTATAAAACATCATGAAGCTTGACCC

Coding sequence (CDS)

ATGGATTTCTCTGGAGGAGGAAACTGGAGCATGATCCCCAACATCCCTACTCTCAGCAACTCCTCTAATCTTTCCAATCAAGAATCCCTTTACCTTCAACAGCAGCAATTCTCCCTTCAGCAGCAGCAGCAGCAGCAACAACAGCAACTATCCTTTCACCACCAGCCACAGCAATTCCAGCCCCAAATTCAACCCCAACAGCAATTTCAGCAGCAACAATCCTCCCCCCAATTTCAACAGCTACAACCCTCTCCTCAAATTCAGCCCCAACAACAACTCTCCACCCAATTCCAGCAGCAAATGCAACCCCAACATTTCCCCCAGCAGCAGCAGCAGCAACAACAACAACAACAGCAATATCATTTTCAACAACAACAGCAGCGCCTTCTTCAACAGCAGCAGCAGCAACAGAAACAGCAGCAATATCATCAACACCAGTCTCTGGCTTCCCATTTTCATCTATTTCATCTTGTGGAGAAATTAGCGGATGCGATTGAGACTGGAGTTAGAGATCAGCAATCGGATGCATTGGTCAATGATCTGAACAACCACTTTGAGAAGTGCCAGCAACTGTTAAACTCGATATCTGGATCACTCAGCTCAAAGGCTATGACAGTAGAGGGACAGAAGAAGAAGCTGGAAGAACATGAGCAGTTGTTAAGTTATCGAAGGGAACTGATTGGCAAATATAAGAGCTCCGTTGAAGAGCTTGGCAAGGGCGAGCCTTAG

Protein sequence

MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQLSFHHQPQQFQPQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFPQQQQQQQQQQQQYHFQQQQQRLLQQQQQQQKQQQYHQHQSLASHFHLFHLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYKSSVEELGKGEP

Homology

[Close]

BLAST of CmoCh01G000650 vs. ExPASy Swiss-Prot
Match: Q8RWA2 (Mediator of RNA polymerase II transcription subunit 9 OS=Arabidopsis thaliana OX=3702 GN=MED9 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.5e-34
Identity = 131/236 (55.51%), Postives = 150/236 (63.56%), Query Frame = 0


Query: 5   GGGNWSMIPNIPTLSNSSNLSN-QESLYLQQQQFSLQQQQQQQQQQLSFHHQPQQFQPQI 64
           GGGNWSMIPN+    N    +N  + L+LQQQQ    QQQQQQQQQ  FH Q QQ   Q 
Sbjct: 7   GGGNWSMIPNVQAQGNFGTPTNHDQQLFLQQQQL---QQQQQQQQQQQFHLQQQQQTQQQ 66

Query: 65  QPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFPQQQQQQQQQQQQYHFQ 124
           Q Q Q QQQQ   Q+QQ Q       QQQ   Q +    P   PQ  Q    QQ   H  
Sbjct: 67  QQQFQPQQQQEMQQYQQFQQQQHFIQQQQFQQQQRLLQSPPLQPQSLQSPPPQQTMVHTP 126

Query: 125 QQQQRLLQQQQQ--QQKQQQYHQHQSLASHFHLFHLVEKLADAIETGVRDQQSDALVNDL 184
           Q      QQQQQ  Q   Q   QHQSLASHFHL+ +VEKLAD IE G RDQ SDALVN+L
Sbjct: 127 QSMMHTPQQQQQLVQTPVQTPQQHQSLASHFHLYPMVEKLADVIENGTRDQNSDALVNEL 186

Query: 185 NNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYKSSVEEL 238
           N+HF+KCQQLLNSISGSL SK MTV+GQK+ +EE EQLL  RR+LI +Y+ S+EE+
Sbjct: 187 NSHFDKCQQLLNSISGSLGSKTMTVDGQKRNVEESEQLLQQRRDLIVEYRKSIEEI 239

[Close]

BLAST of CmoCh01G000650 vs. ExPASy Swiss-Prot
Match: Q55F68 (Adenylate cyclase, terminal-differentiation specific OS=Dictyostelium discoideum OX=44689 GN=acrA PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 9.4e-05
Identity = 80/166 (48.19%), Postives = 95/166 (57.23%), Query Frame = 0


Query: 27   QESLYLQQQQFSLQQQQQQQQQQLSFHHQPQQFQPQIQPQQQFQQQ-QSSPQFQQLQPSP 86
            Q+    QQQQ   QQQQQQQQQQ     QPQQ Q Q+Q QQQ QQQ Q SPQ QQ    P
Sbjct: 1925 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQQ-QQQLQQQQQHQQQKQPSPQQQQQPQQP 1984

Query: 87   QIQPQQQLSTQFQQQMQPQHFPQQQQQQQQQQQQYHFQQQQQRLLQQQQQQQKQQQYHQH 146
            Q Q QQQ+  Q+Q Q+Q Q   QQQQQQQQQQQQ   QQQQQ+  QQQQQQQ+QQQ  Q 
Sbjct: 1985 QQQQQQQIQNQYQHQLQYQRQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 2044

Query: 147  QSLASHFHLFHLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQL 192
            Q    H H     ++ +   +   + QQ            ++ QQ+
Sbjct: 2045 QQHHHHHHQQQQFQQQSQQSQQQSQQQQQQQQQQSQQQSQQQSQQI 2089

[Close]

BLAST of CmoCh01G000650 vs. ExPASy TrEMBL
Match: A0A6J1GCY0 (mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC111452828 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 2.1e-108
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQLSFHHQPQQFQ 60
           MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQLSFHHQPQQFQ
Sbjct: 1   MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQLSFHHQPQQFQ 60

Query: 61  PQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFPQQQQQQQQQQQQY 120
           PQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFPQQQQQQQQQQQQY
Sbjct: 61  PQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFPQQQQQQQQQQQQY 120

Query: 121 HFQQQQQRLLQQQQQQQKQQQYHQHQSLASHFHLFHLVEKLADAIETGVRDQQSDALVND 180
           HFQQQQQRLLQQQQQQQKQQQYHQHQSLASHFHLFHLVEKLADAIETGVRDQQSDALVND
Sbjct: 121 HFQQQQQRLLQQQQQQQKQQQYHQHQSLASHFHLFHLVEKLADAIETGVRDQQSDALVND 180

Query: 181 LNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYKSSVEELGKG 240
           LNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYKSSVEELGKG
Sbjct: 181 LNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYKSSVEELGKG 240

Query: 241 EP 243
           EP
Sbjct: 241 EP 242

[Close]

BLAST of CmoCh01G000650 vs. ExPASy TrEMBL
Match: A0A6J1K651 (mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita maxima OX=3661 GN=LOC111492669 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 5.3e-104
Identity = 239/244 (97.95%), Postives = 239/244 (97.95%), Query Frame = 0


Query: 1   MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSL--QQQQQQQQQQLSFHHQPQQ 60
           MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSL  QQQQQQQQQQLSFHHQPQQ
Sbjct: 1   MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQQQLSFHHQPQQ 60

Query: 61  FQPQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFPQQQQQQQQQQQ 120
           FQPQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFP  QQQQQQQQQ
Sbjct: 61  FQPQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFP--QQQQQQQQQ 120

Query: 121 QYHFQQQQQRLLQQQQQQQKQQQYHQHQSLASHFHLFHLVEKLADAIETGVRDQQSDALV 180
           QYHFQQQQQRLLQQQQQQQKQQQYHQHQSLASHFHLFHLVEKLADAIETGVRDQQSDALV
Sbjct: 121 QYHFQQQQQRLLQQQQQQQKQQQYHQHQSLASHFHLFHLVEKLADAIETGVRDQQSDALV 180

Query: 181 NDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYKSSVEELG 240
           NDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYKSSVEEL 
Sbjct: 181 NDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYKSSVEELV 240

Query: 241 KGEP 243
           KGEP
Sbjct: 241 KGEP 242

[Close]

BLAST of CmoCh01G000650 vs. ExPASy TrEMBL
Match: A0A6J1FZC2 (mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC111449284 PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 5.2e-91
Identity = 219/243 (90.12%), Postives = 225/243 (92.59%), Query Frame = 0


Query: 1   MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSL--QQQQQQQQQQLSFHHQPQQ 60
           MDFS GGNWSMIPNIP LSNSSNLSNQESLYLQQQQFSL  QQQQQQQQQQ SFHHQ QQ
Sbjct: 1   MDFS-GGNWSMIPNIPNLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQQQQSFHHQQQQ 60

Query: 61  FQPQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFPQQQQQQQQQQQ 120
           FQPQIQ QQQFQQQQ SPQFQQ QPSPQ QPQQQ S QFQQQ+QPQHFPQQQQQQQQQQQ
Sbjct: 61  FQPQIQSQQQFQQQQLSPQFQQQQPSPQTQPQQQPSPQFQQQLQPQHFPQQQQQQQQQQQ 120

Query: 121 QYHFQQQQQRLLQQQQQQQKQQQYHQHQSLASHFHLFHLVEKLADAIETGVRDQQSDALV 180
           QYHFQQQQQ+  QQQQQQQ+QQQYHQHQSLASHFHLFHLVEKLAD IE G RDQQSDALV
Sbjct: 121 QYHFQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLFHLVEKLADTIENGARDQQSDALV 180

Query: 181 NDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYKSSVEELG 240
           NDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLL++RRELIGKYK+SVEEL 
Sbjct: 181 NDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELV 240

Query: 241 KGE 242
           KGE
Sbjct: 241 KGE 242

[Close]

BLAST of CmoCh01G000650 vs. ExPASy TrEMBL
Match: A0A6J1D301 (Mediator of RNA polymerase II transcription subunit 9 OS=Momordica charantia OX=3673 GN=LOC111016860 PE=3 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 4.0e-83
Identity = 208/246 (84.55%), Postives = 217/246 (88.21%), Query Frame = 0


Query: 1   MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQLSFHHQPQQFQ 60
           MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSLQQQQ        FHHQ QQFQ
Sbjct: 1   MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSLQQQQ-------PFHHQQQQFQ 60

Query: 61  PQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFPQQQQQQQQQQQQY 120
           PQ+QP QQFQQQQ SPQFQQ QPSPQIQPQQ  S QFQQQ+QPQHFPQQQQQQQQ   Q 
Sbjct: 61  PQLQP-QQFQQQQPSPQFQQQQPSPQIQPQQP-SPQFQQQLQPQHFPQQQQQQQQYHFQQ 120

Query: 121 HFQQQQQRLL-----QQQQQQQKQQQYHQHQSLASHFHLFHLVEKLADAIETGVRDQQSD 180
             QQQQQRLL     QQQQQQQ+QQQYHQHQSLASHFHLFHLVEKLADAIE G RDQQSD
Sbjct: 121 QQQQQQQRLLQQQQQQQQQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSD 180

Query: 181 ALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYKSSVE 240
           ALVNDLNNHFEKCQQLLNSISGSLSSKAMTV+GQKKKLEEH+QLL++RRELIGKYK+SVE
Sbjct: 181 ALVNDLNNHFEKCQQLLNSISGSLSSKAMTVDGQKKKLEEHKQLLNHRRELIGKYKNSVE 237

Query: 241 ELGKGE 242
           EL KG+
Sbjct: 241 ELVKGD 237

[Close]

BLAST of CmoCh01G000650 vs. ExPASy TrEMBL
Match: A0A6J1HX54 (Mediator of RNA polymerase II transcription subunit 9 OS=Cucurbita maxima OX=3661 GN=LOC111467667 PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 2.5e-77
Identity = 201/250 (80.40%), Postives = 205/250 (82.00%), Query Frame = 0


Query: 1   MDFSGGGNWSMIPNIPTL---------SNSSNLSNQESLYLQQQQFSLQQQQQQQQQQLS 60
           MDFS GGNWSMIPNIP L         SNSSNLSNQESLYLQQQQFSLQQQQQQQQQQ S
Sbjct: 1   MDFS-GGNWSMIPNIPNLSNSSNLSNHSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQ-S 60

Query: 61  FHHQPQQFQPQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFPQQQQ 120
           FH Q QQFQPQIQ QQQFQQQQ SPQFQQ QPSP          QFQQQ+QPQHFP   Q
Sbjct: 61  FHQQQQQFQPQIQSQQQFQQQQLSPQFQQQQPSP----------QFQQQLQPQHFP---Q 120

Query: 121 QQQQQQQQYHFQQQQQRLLQQQQQQQKQQQYHQHQSLASHFHLFHLVEKLADAIETGVRD 180
           QQQQQQQQYHFQQQQQ           QQQYHQHQSLASHFHLFHLVEKLAD IE G RD
Sbjct: 121 QQQQQQQQYHFQQQQQ-----------QQQYHQHQSLASHFHLFHLVEKLADTIENGARD 180

Query: 181 QQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYK 240
           QQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLL++RRELIGKYK
Sbjct: 181 QQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYK 224

Query: 241 SSVEELGKGE 242
           +SVEEL KGE
Sbjct: 241 NSVEELVKGE 224

[Close]

BLAST of CmoCh01G000650 vs. NCBI nr
Match: XP_022949500.1 (mediator of RNA polymerase II transcription subunit 9-like [Cucurbita moschata])

HSP 1 Score: 401.7 bits (1031), Expect = 4.3e-108
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQLSFHHQPQQFQ 60
           MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQLSFHHQPQQFQ
Sbjct: 1   MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQLSFHHQPQQFQ 60

Query: 61  PQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFPQQQQQQQQQQQQY 120
           PQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFPQQQQQQQQQQQQY
Sbjct: 61  PQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFPQQQQQQQQQQQQY 120

Query: 121 HFQQQQQRLLQQQQQQQKQQQYHQHQSLASHFHLFHLVEKLADAIETGVRDQQSDALVND 180
           HFQQQQQRLLQQQQQQQKQQQYHQHQSLASHFHLFHLVEKLADAIETGVRDQQSDALVND
Sbjct: 121 HFQQQQQRLLQQQQQQQKQQQYHQHQSLASHFHLFHLVEKLADAIETGVRDQQSDALVND 180

Query: 181 LNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYKSSVEELGKG 240
           LNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYKSSVEELGKG
Sbjct: 181 LNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYKSSVEELGKG 240

Query: 241 EP 243
           EP
Sbjct: 241 EP 242

[Close]

BLAST of CmoCh01G000650 vs. NCBI nr
Match: XP_023523773.1 (mediator of RNA polymerase II transcription subunit 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 393.3 bits (1009), Expect = 1.5e-105
Identity = 240/242 (99.17%), Postives = 240/242 (99.17%), Query Frame = 0


Query: 1   MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQLSFHHQPQQFQ 60
           MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQLSFHHQPQQFQ
Sbjct: 1   MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQLSFHHQPQQFQ 60

Query: 61  PQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFPQQQQQQQQQQQQY 120
           PQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFP QQQQQQQQQQQY
Sbjct: 61  PQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFP-QQQQQQQQQQQY 120

Query: 121 HFQQQQQRLLQQQQQQQKQQQYHQHQSLASHFHLFHLVEKLADAIETGVRDQQSDALVND 180
           HFQQQQQRLLQQQQQQQKQQQYHQHQSLASHFHLFHLVEKLADAIETGVRDQQSDALVND
Sbjct: 121 HFQQQQQRLLQQQQQQQKQQQYHQHQSLASHFHLFHLVEKLADAIETGVRDQQSDALVND 180

Query: 181 LNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYKSSVEELGKG 240
           LNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYKSSVEEL KG
Sbjct: 181 LNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYKSSVEELVKG 240

Query: 241 EP 243
           EP
Sbjct: 241 EP 241

[Close]

BLAST of CmoCh01G000650 vs. NCBI nr
Match: XP_022997827.1 (mediator of RNA polymerase II transcription subunit 9-like [Cucurbita maxima])

HSP 1 Score: 387.1 bits (993), Expect = 1.1e-103
Identity = 239/244 (97.95%), Postives = 239/244 (97.95%), Query Frame = 0


Query: 1   MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSL--QQQQQQQQQQLSFHHQPQQ 60
           MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSL  QQQQQQQQQQLSFHHQPQQ
Sbjct: 1   MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQQQLSFHHQPQQ 60

Query: 61  FQPQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFPQQQQQQQQQQQ 120
           FQPQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFP  QQQQQQQQQ
Sbjct: 61  FQPQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFP--QQQQQQQQQ 120

Query: 121 QYHFQQQQQRLLQQQQQQQKQQQYHQHQSLASHFHLFHLVEKLADAIETGVRDQQSDALV 180
           QYHFQQQQQRLLQQQQQQQKQQQYHQHQSLASHFHLFHLVEKLADAIETGVRDQQSDALV
Sbjct: 121 QYHFQQQQQRLLQQQQQQQKQQQYHQHQSLASHFHLFHLVEKLADAIETGVRDQQSDALV 180

Query: 181 NDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYKSSVEELG 240
           NDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYKSSVEEL 
Sbjct: 181 NDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYKSSVEELV 240

Query: 241 KGEP 243
           KGEP
Sbjct: 241 KGEP 242

[Close]

BLAST of CmoCh01G000650 vs. NCBI nr
Match: KAG6606716.1 (hypothetical protein SDJN03_00058, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 387.1 bits (993), Expect = 1.1e-103
Identity = 239/243 (98.35%), Postives = 239/243 (98.35%), Query Frame = 0


Query: 1   MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQLSFHHQPQQFQ 60
           MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQLSFHHQPQQFQ
Sbjct: 1   MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQLSFHHQPQQFQ 60

Query: 61  PQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFPQQQQQQQQQQQQY 120
           PQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFP QQQQQQQQQQQY
Sbjct: 61  PQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFP-QQQQQQQQQQQY 120

Query: 121 HFQQQQQRLL-QQQQQQQKQQQYHQHQSLASHFHLFHLVEKLADAIETGVRDQQSDALVN 180
           HFQQQQQRLL QQQQQQQKQQQYHQHQSLASHFHLFH VEKLADAIETGVRDQQSDALVN
Sbjct: 121 HFQQQQQRLLQQQQQQQQKQQQYHQHQSLASHFHLFHFVEKLADAIETGVRDQQSDALVN 180

Query: 181 DLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYKSSVEELGK 240
           DLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYKSSVEEL K
Sbjct: 181 DLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYKSSVEELVK 240

Query: 241 GEP 243
           GEP
Sbjct: 241 GEP 242

[Close]

BLAST of CmoCh01G000650 vs. NCBI nr
Match: KAG7036431.1 (Mediator of RNA polymerase II transcription subunit 9, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 347.8 bits (891), Expect = 7.4e-92
Identity = 220/227 (96.92%), Postives = 220/227 (96.92%), Query Frame = 0


Query: 1   MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQLSFHHQPQQFQ 60
           MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSL QQQQQQQQQLSFHH PQQFQ
Sbjct: 1   MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSL-QQQQQQQQQLSFHHHPQQFQ 60

Query: 61  PQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFPQQQQQQQQQQQQY 120
           PQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFP QQQQQQQQQQQY
Sbjct: 61  PQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFP-QQQQQQQQQQQY 120

Query: 121 HFQQQQQRLL---QQQQQQQKQQQYHQHQSLASHFHLFHLVEKLADAIETGVRDQQSDAL 180
           HFQQQQQRLL   QQQQQQQKQQQYHQHQSLASHFHLFH VEKLADAIETGVRDQQSDAL
Sbjct: 121 HFQQQQQRLLQQQQQQQQQQKQQQYHQHQSLASHFHLFHFVEKLADAIETGVRDQQSDAL 180

Query: 181 VNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRR 225
           VNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRR
Sbjct: 181 VNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRR 225

[Close]

BLAST of CmoCh01G000650 vs. TAIR 10
Match: AT1G55080.1 (MED9; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29580.1); Has 67203 Blast hits to 25757 proteins in 1293 species: Archae - 12; Bacteria - 4374; Metazoa - 24340; Fungi - 7940; Plants - 5927; Viruses - 273; Other Eukaryotes - 24337 (source: NCBI BLink). )

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-35
Identity = 131/236 (55.51%), Postives = 150/236 (63.56%), Query Frame = 0


Query: 5   GGGNWSMIPNIPTLSNSSNLSN-QESLYLQQQQFSLQQQQQQQQQQLSFHHQPQQFQPQI 64
           GGGNWSMIPN+    N    +N  + L+LQQQQ    QQQQQQQQQ  FH Q QQ   Q 
Sbjct: 7   GGGNWSMIPNVQAQGNFGTPTNHDQQLFLQQQQL---QQQQQQQQQQQFHLQQQQQTQQQ 66

Query: 65  QPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFPQQQQQQQQQQQQYHFQ 124
           Q Q Q QQQQ   Q+QQ Q       QQQ   Q +    P   PQ  Q    QQ   H  
Sbjct: 67  QQQFQPQQQQEMQQYQQFQQQQHFIQQQQFQQQQRLLQSPPLQPQSLQSPPPQQTMVHTP 126

Query: 125 QQQQRLLQQQQQ--QQKQQQYHQHQSLASHFHLFHLVEKLADAIETGVRDQQSDALVNDL 184
           Q      QQQQQ  Q   Q   QHQSLASHFHL+ +VEKLAD IE G RDQ SDALVN+L
Sbjct: 127 QSMMHTPQQQQQLVQTPVQTPQQHQSLASHFHLYPMVEKLADVIENGTRDQNSDALVNEL 186

Query: 185 NNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYKSSVEEL 238
           N+HF+KCQQLLNSISGSL SK MTV+GQK+ +EE EQLL  RR+LI +Y+ S+EE+
Sbjct: 187 NSHFDKCQQLLNSISGSLGSKTMTVDGQKRNVEESEQLLQQRRDLIVEYRKSIEEI 239

The following BLAST results are available for this feature:

BLAST of CmoCh01G000650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWA2	1.5e-34	55.51	Mediator of RNA polymerase II transcription subunit 9 OS=Arabidopsis thaliana OX...	[more]
Q55F68	9.4e-05	48.19	Adenylate cyclase, terminal-differentiation specific OS=Dictyostelium discoideum...	[more]

BLAST of CmoCh01G000650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GCY0	2.1e-108	100.00	mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita moschata...	[more]
A0A6J1K651	5.3e-104	97.95	mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita maxima O...	[more]
A0A6J1FZC2	5.2e-91	90.12	mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita moschata...	[more]
A0A6J1D301	4.0e-83	84.55	Mediator of RNA polymerase II transcription subunit 9 OS=Momordica charantia OX=...	[more]
A0A6J1HX54	2.5e-77	80.40	Mediator of RNA polymerase II transcription subunit 9 OS=Cucurbita maxima OX=366...	[more]

BLAST of CmoCh01G000650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949500.1	4.3e-108	100.00	mediator of RNA polymerase II transcription subunit 9-like [Cucurbita moschata]	[more]
XP_023523773.1	1.5e-105	99.17	mediator of RNA polymerase II transcription subunit 9-like [Cucurbita pepo subsp...	[more]
XP_022997827.1	1.1e-103	97.95	mediator of RNA polymerase II transcription subunit 9-like [Cucurbita maxima]	[more]
KAG6606716.1	1.1e-103	98.35	hypothetical protein SDJN03_00058, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7036431.1	7.4e-92	96.92	Mediator of RNA polymerase II transcription subunit 9, partial [Cucurbita argyro...	[more]

BLAST of CmoCh01G000650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55080.1	1.1e-35	55.51	MED9; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G2958...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..115
None	No IPR available	PANTHER	PTHR37188:SF1	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT-RELATED	coord: 118..242
None	No IPR available	PANTHER	PTHR37188:SF1	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT-RELATED	coord: 1..58
IPR038790	Mediator of RNA polymerase II transcription subunit 9, plant	PANTHER	PTHR37188	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT-RELATED	coord: 118..242
IPR038790	Mediator of RNA polymerase II transcription subunit 9, plant	PANTHER	PTHR37188	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT-RELATED	coord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G000650.1	CmoCh01G000650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity