CmoCh00G000320 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh00G000320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Mitotic spindle checkpoint protein MAD2
Location	Cmo_Chr00: 6154426 .. 6154638 (+)
RNA-Seq Expression	CmoCh00G000320
Synteny	CmoCh00G000320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTAGATGGTGGTCTGTCATGGGCAGATCAATGGGATTCCAACCCTGACCCAGGCCCTCCACCATCGTCGGCAGAAAACGGGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGGAGGAGGGGGGATCCTCCTCGTCAGAGAAGAGCATATTTAAGAAGGCAAGCTTGAAGTGGATAAAGGAATTGCGAAAGAAATCTGAGAAATCTTGA

mRNA sequence

ATGGGTTTAGATGGTGGTCTGTCATGGGCAGATCAATGGGATTCCAACCCTGACCCAGGCCCTCCACCATCGTCGGCAGAAAACGGGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGGAGGAGGGGGGATCCTCCTCGTCAGAGAAGAGCATATTTAAGAAGGCAAGCTTGAAGTGGATAAAGGAATTGCGAAAGAAATCTGAGAAATCTTGA

Coding sequence (CDS)

ATGGGTTTAGATGGTGGTCTGTCATGGGCAGATCAATGGGATTCCAACCCTGACCCAGGCCCTCCACCATCGTCGGCAGAAAACGGGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGGAGGAGGGGGGATCCTCCTCGTCAGAGAAGAGCATATTTAAGAAGGCAAGCTTGAAGTGGATAAAGGAATTGCGAAAGAAATCTGAGAAATCTTGA

Protein sequence

MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASLKWIKELRKKSEKS

Homology

[Close]

BLAST of CmoCh00G000320 vs. ExPASy TrEMBL
Match: A0A6J1EVQ9 (uncharacterized protein LOC111438527 OS=Cucurbita moschata OX=3662 GN=LOC111438527 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.0e-27
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASLKWI 60
          MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASLKWI
Sbjct: 1  MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASLKWI 60

Query: 61 KELRKKSEKS 71
          KELRKKSEKS
Sbjct: 61 KELRKKSEKS 70

[Close]

BLAST of CmoCh00G000320 vs. ExPASy TrEMBL
Match: A0A6J1HYV9 (uncharacterized protein LOC111469348 OS=Cucurbita maxima OX=3661 GN=LOC111469348 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.6e-24
Identity = 66/70 (94.29%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASLKWI 60
          MGLDGGLSWADQWDSNPDPGPPPSS ENGKKKKKK   KEEGGSSSSEKSIFKKASLKWI
Sbjct: 1  MGLDGGLSWADQWDSNPDPGPPPSSTENGKKKKKK---KEEGGSSSSEKSIFKKASLKWI 60

Query: 61 KELRKKSEKS 71
          KELRKKSEKS
Sbjct: 61 KELRKKSEKS 67

[Close]

BLAST of CmoCh00G000320 vs. ExPASy TrEMBL
Match: A0A0A0KVC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G590180 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.4e-09
Identity = 46/72 (63.89%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 1  MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASL--K 60
          MGLDGGLSWADQWD NPD  PPPSS+EN KKK K           SS+KS F+K  L  K
Sbjct: 1  MGLDGGLSWADQWDYNPD--PPPSSSENEKKKNK---------DGSSDKSKFRKTILGFK 60

Query: 61 WIKELRKKSEKS 71
          W+KELRKKS+KS
Sbjct: 61 WMKELRKKSDKS 61

[Close]

BLAST of CmoCh00G000320 vs. ExPASy TrEMBL
Match: A0A1S3BE81 (uncharacterized protein LOC103488917 OS=Cucumis melo OX=3656 GN=LOC103488917 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.5e-09
Identity = 44/72 (61.11%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 1  MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASL--K 60
          MGLDGGLSWADQWD NPD  PPPSS++N KKK K           SS+KS F+K  L  K
Sbjct: 1  MGLDGGLSWADQWDYNPD--PPPSSSDNDKKKNK---------DGSSDKSKFRKTILGFK 60

Query: 61 WIKELRKKSEKS 71
          W+K+LRKKS+KS
Sbjct: 61 WMKDLRKKSDKS 61

[Close]

BLAST of CmoCh00G000320 vs. ExPASy TrEMBL
Match: A0A5A7STC2 (Mitotic spindle checkpoint protein MAD2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G002160 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.9e-07
Identity = 41/69 (59.42%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 4   DGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASL--KWIK 63
           DGGLSWADQWD NPD  PPPSS++N KKK K           SS+KS F+K  L  KW+K
Sbjct: 205 DGGLSWADQWDYNPD--PPPSSSDNDKKKNK---------DGSSDKSKFRKTILGFKWMK 262

Query: 64  ELRKKSEKS 71
           +LRKKS+KS
Sbjct: 265 DLRKKSDKS 262

[Close]

BLAST of CmoCh00G000320 vs. NCBI nr
Match: XP_022932206.1 (uncharacterized protein LOC111438527 [Cucurbita moschata] >XP_023519855.1 uncharacterized protein LOC111783185 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.0 bits (328), Expect = 4.1e-27
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASLKWI 60
          MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASLKWI
Sbjct: 1  MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASLKWI 60

Query: 61 KELRKKSEKS 71
          KELRKKSEKS
Sbjct: 61 KELRKKSEKS 70

[Close]

BLAST of CmoCh00G000320 vs. NCBI nr
Match: KAG6583660.1 (hypothetical protein SDJN03_19592, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032466.1 hypothetical protein SDJN02_06514, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.8 bits (312), Expect = 3.0e-25
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MGLDGGLSWADQWDSNPDPGPPPSSAENG--KKKKKKKKEKEEGGSSSSEKSIFKKASLK 60
          MGLDGGLSWADQWDSNPDPGPPPSSAENG  KKKKKKKKEKE+GGSSSSEKSIFKKASLK
Sbjct: 1  MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKKKEKEDGGSSSSEKSIFKKASLK 60

Query: 61 WIKELRKKSEKS 71
          WIKELRKKSEKS
Sbjct: 61 WIKELRKKSEKS 72

[Close]

BLAST of CmoCh00G000320 vs. NCBI nr
Match: XP_022970362.1 (uncharacterized protein LOC111469348 [Cucurbita maxima])

HSP 1 Score: 119.8 bits (299), Expect = 9.5e-24
Identity = 66/70 (94.29%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASLKWI 60
          MGLDGGLSWADQWDSNPDPGPPPSS ENGKKKKKK   KEEGGSSSSEKSIFKKASLKWI
Sbjct: 1  MGLDGGLSWADQWDSNPDPGPPPSSTENGKKKKKK---KEEGGSSSSEKSIFKKASLKWI 60

Query: 61 KELRKKSEKS 71
          KELRKKSEKS
Sbjct: 61 KELRKKSEKS 67

[Close]

BLAST of CmoCh00G000320 vs. NCBI nr
Match: KAG7012753.1 (Mitotic spindle checkpoint protein MAD2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-19
Identity = 62/71 (87.32%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 4   DGGLSWADQWDSNPDPGPPPSSAENGKKK---KKKKKEKEEGG-SSSSEKSIFKKASLKW 63
           D GLSWADQWD+NPDP PPPSSAENGKKK   KKKKKEKEEGG SSSSEK+IFKKA+LKW
Sbjct: 206 DDGLSWADQWDNNPDPNPPPSSAENGKKKNIFKKKKKEKEEGGSSSSSEKNIFKKANLKW 265

Query: 64  IKELRKKSEKS 71
           IKELRKKSEKS
Sbjct: 266 IKELRKKSEKS 276

[Close]

BLAST of CmoCh00G000320 vs. NCBI nr
Match: XP_038892905.1 (uncharacterized protein LOC120081808 [Benincasa hispida])

HSP 1 Score: 72.0 bits (175), Expect = 2.3e-09
Identity = 46/72 (63.89%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 1  MGLDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASL--K 60
          MGLDGGLSWADQWD+NPDP PP SS+EN KKK K           SSEK  F+K  L  K
Sbjct: 1  MGLDGGLSWADQWDNNPDP-PPSSSSENEKKKNK---------DGSSEKGKFRKTILGFK 60

Query: 61 WIKELRKKSEKS 71
          W+KELRKKS+KS
Sbjct: 61 WMKELRKKSDKS 62

[Close]

BLAST of CmoCh00G000320 vs. TAIR 10
Match: AT1G67670.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24405.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.4 bits (137), Expect = 5.4e-09
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 3  LDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASLKWIKE 62
          +D G SWADQWD N +P P PSS +  + KKK KK+KEE GS SS          KW+KE
Sbjct: 1  MDSGPSWADQWDYN-NPDPLPSSTKEDESKKKNKKKKEEDGSKSSLGKTL--LGFKWMKE 60

Query: 63 LRKKSEK 70
          LRKKSEK
Sbjct: 61 LRKKSEK 64

[Close]

BLAST of CmoCh00G000320 vs. TAIR 10
Match: AT1G24405.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 2.1e-08
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 3  LDGGLSWADQWDSNPDPGPPPSSAENGKKKKKKKKEKEEGGSSSSEKSIFKKASLKWIKE 62
          +D GLSWADQWD N D  PPP+S+    KKKKKKK+KE+G  S   K+I      KW+K 
Sbjct: 1  MDSGLSWADQWDYNSD--PPPNSSNEDDKKKKKKKKKEDGSKSGIGKAIL---GFKWMK- 60

Query: 63 LRKKSEK 70
          L KKS+K
Sbjct: 61 LGKKSDK 61

The following BLAST results are available for this feature:

BLAST of CmoCh00G000320 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh00G000320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EVQ9	2.0e-27	100.00	uncharacterized protein LOC111438527 OS=Cucurbita moschata OX=3662 GN=LOC1114385...	[more]
A0A6J1HYV9	4.6e-24	94.29	uncharacterized protein LOC111469348 OS=Cucurbita maxima OX=3661 GN=LOC111469348...	[more]
A0A0A0KVC1	1.4e-09	63.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G590180 PE=4 SV=1	[more]
A0A1S3BE81	5.5e-09	61.11	uncharacterized protein LOC103488917 OS=Cucumis melo OX=3656 GN=LOC103488917 PE=...	[more]
A0A5A7STC2	3.9e-07	59.42	Mitotic spindle checkpoint protein MAD2 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of CmoCh00G000320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932206.1	4.1e-27	100.00	uncharacterized protein LOC111438527 [Cucurbita moschata] >XP_023519855.1 unchar...	[more]
KAG6583660.1	3.0e-25	95.83	hypothetical protein SDJN03_19592, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022970362.1	9.5e-24	94.29	uncharacterized protein LOC111469348 [Cucurbita maxima]	[more]
KAG7012753.1	1.1e-19	87.32	Mitotic spindle checkpoint protein MAD2 [Cucurbita argyrosperma subsp. argyrospe...	[more]
XP_038892905.1	2.3e-09	63.89	uncharacterized protein LOC120081808 [Benincasa hispida]	[more]

BLAST of CmoCh00G000320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67670.1	5.4e-09	56.72	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G24405.1	2.1e-08	55.22	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52
None	No IPR available	PANTHER	PTHR33386:SF1	F12A21.18-RELATED	coord: 4..69
None	No IPR available	PANTHER	PTHR33386	OS02G0740600 PROTEIN	coord: 4..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh00G000320.1	CmoCh00G000320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process