Cmc12g0338921 (gene) Melon (Charmono) v1.1

Overview
NameCmc12g0338921
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRRM domain-containing protein
LocationCMiso1.1chr12: 26264716 .. 26270527 (-)
RNA-Seq ExpressionCmc12g0338921
SyntenyCmc12g0338921
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTATAATTTGTTACTGTGATACGGTGCCGTTGTGGAGATATGGACTCTGAGAAAAAAGAGGTAGACTCCCCTATGATTATTACGGATTGCGAATTCCTCGAAATCAAACTGTTATAGCGGCTTTCGGGTGAAACGCCGGAGAAGACGAAAATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCAAAACCCTTCTTTCTGCTTCAGACTACTCATCACAACAATATCCGTTCAACCGAGACGCATATGCGATTTCAAAGCTTTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGAGTCACCGCTCTTTTCAGTGGCATGTGTCTCTTCTTCACCTTCTCCCAGAAGATACTCGCCTTCAACCAGACTCTACGTCAGTGGTTGATTTTCTTTCTCTCAGTTGTCTATTTAGGCATAATTTGGCTAACTGTGTATGTGGAGACAATTTGGATTGCTTGAATCATTCCAACTTCATCTGTGCAGGACTTTCATTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGGTCGTTGACTAGTAGTTTTCTTGTGCATTCTGAACGTTCAATTTTGACTCAATTGTCGATATCTGGCCCTAACTATTATCATTTGTTGTTAAATTCAGTCAATCTGGTGATGGATAGAGTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAGTCTCAAAAAGCTATCGAAGGAATGCACGGCAAGGTAATTTACGTGCTCTATCTTTGCAATTGATGCTCTGTCTAATTTCTTCCAGATGAGTATAGTTTTCATGATGCATATTGCTTTCTTCTGTGTTATGCATTATCCTCTCAATCGCCAAAATCCACTTAAAATGCCCATTTCTCACTCACTATGATTTTGTAATGCATACGACTAGCCGTCTTGAATTATATCTGATTTACTCAGCATCTCTGGGTGAAGACGATAAATCCATCTATTAGGACTCTAAATAACTATAATCTACTCCAGAACTTGCGAGGTTTAATTCCTTTAGCTGAAGACAGTTTAGGCTTTACACAAAGGGACCATAAACCTTGAATTTCTCTGTAATTTTAGCTAGGGCATAGATATCTAGAAAGGAAAAGCTGGATGCGATAGATTTAAAGTCGTATTTAGAGGACATAAAATAGCGTCCATCCAGATCCAGTTATTCTTAATCATTTCTTCCTTTCCGAGCTGCGGGACATTATAACTGTTATACCTTCAAACGGAAAAAATGAACTTCAACAGACGGTTAATAGCTGAGTGTTGATATAAGCATGAGGTATTCATAACTTTGTTTTATTGCATCGGTGCACGTGTATATCAGCAGATAGACTACTTGTCATGGTTAGATTAACATTGTTAGGAGGAACAAAGCCGATTAACTAAAGCTGCCCTCGCAATTTCTGTTTTACTACATACAAAACCTTGGATGGAACTCACTTGAGCTTTGTAAATGATCTAAATATTGAATAGGCATTGCCTTCTCCCCTGTCTCCTGAGCCAAGTGAAACTCACCAGCAGACAGTTACTAATTCCCTCCCTCATCCTTTCCTCCTTAAAGCTTTCATATTTGCGATCACTTACCATCGGATCTAACTAGTTCCAACTACGGCCAAGAACAAAAGTGTTTGAAGCATAACATTAGTGTTTTTAAAATTTCTCAACGATTTTTATCATTTGACTACATACTAAGAAAATTTTGAAATATGTTTTTGGGTAAATTTTCATCTTTCTGAAAGTGATTCCAACTCAATACCATTGGTGGTCATTCTCGCCTTTGCCCTTCGTATTATAAGTAAACTACGGGGGGAGACCTAGGGGGCCTATCAAATACTGCAACCAAAATATCAAATGTTTCTTGAATATTCGGCATGCTCCACGTAACTGATTATAATAAAATTCATTACAATTTAATATGGACTTGGAAGAGAATTAATTAGAGATGGTTAAACCCTAATTTATGGCTTGACTTGTCCTAGAACGATCCCTGTTCAATGAACTTGTTATATGAAAGGATTTATTTGTAATTAAAATTTCAAACGCAAATCACACTATACTCAATATATTCGCGTTTATAGCTAAAAATTTGTGTATCAGAGTGCATAGTACCACTGTTAAATATAAAGGCACTTTTCGGCCTCGAGGTTTCCTCCAACTTATAGTGACAACTATGTTTGTCGAAGTTAACGGTCAAAGAACTTATTCCCAGGTTTATTCGATGGATATACCCTCCCCACCTCTTCTCATCGGGAAGCATGAATTGATATGATATTCTCTTCTCAGATTCCATGGATAAAATTCGATGCTACCAAAAGAGAAAAAGGGTACTTTTGAAATCAAGCTTATAGCTGGGAGGATCTGATCTTATATCAACCAATTATAGGAGATTTTTATTTTTATTTATTTCTAATAAATAAAATGAAAAGGGAATCTATGATGATCTTGTGATCTTGTTGTCTTATCTTTTTTAGTGCATGTAATTTTCAAGTACAGCAGCATCATGAACTAATAGGGGAAACTTTGGTTTAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAATTGCAAAACCCAGATCGGAGCTACGCCAAGGCCTTAAAGAAAACTCTAGCTAATGCATGCTAGTATATAGGCATCATTGTACTCTAAAGTTCAGATTCATTTTTATGAGAGCTGTAACATATTTTAGGGATATATATAACTAATGGTTGCGCTCTGCATTGTTATTGGTTTTCGAAAGCTTGGTCTGATTGTATGGTTATAATATAGTCAAAGTGTATTTAAGAGCAGTGTTCTGTCTTGAAATTAAATGATATTAATATCGAGGAATTGGTAAATTGGATAACCTAACCAAACATGAACTTCTGAGGCAAAGTTTATGGTCAAGGTTCACAGGTTGTAACACGTATATGTGAATGCTTAAATCATGAGAAGCGCAGTTCTTTAGAAATAGTAAGAGGACTTTTAGGCGTGTTGATTGATACCGGACATGTACCCGTGAGGGAGAGTGTGGGACATAGTTCGAACAAACAAGAAGGGCCCCTTCCTGTTCCGTCCGTGCTGAATTCTGTCTTTAGGAACAAAGATATAATTAAAGTCAACGATTCCCTTGGAATCACAGGCACCTATAGAATTTTGAAGTCTATTTAAACAAATAAGTTTCCTCAGATTTTGTACTTGGTTGTTCATGAACCATCAGTGTACTGCACATTAAAACTGATAATTAATGATATTGACTTTCTAATGACAAATGTTGTGGTCAAGGTGTTGGAGAATAAAGGGGGAATTTTCCCATCACTTCGGATCTGTATTTTGAGTTATATTACTCTAGATGAGAGAACGGATGTTAACAAACTAATATTGAGACGAGTGTTCAAGATGGCCACTGATTAAATGCTGGAAAGGAGGATTCACTTGTCGCAGTTTTGCTCGTCATTCTTCACCTTCAGGAAGATTAAGTATTTGATAGTTAAACATTTTGGTCTTCAAATTGAACTAGTTTGTTCAAAGATAGGTTAAAGATTAATTGTATCTCTCTTACAAGCTCTATTCGCCTAGAAATTTAACTTTTCCATTATGAAGATAAGAATTAGAAAGAAAAACCTCCAAAAATAACATTTGCAAATATGTTAAAAGTCATGGAGCAACATCCTTCTGCTTTACAGAATGAATAATTGTCACTCAAATACCCACCCCCCCCCCCCCCCCCCCCCCCCCCCAATGTTAAATCAAACCTCGATCCTTCTGTTTGTTTACTTTAGATGTGATATGCTACAAATCAGGCCTCCATTTTTTCATCTCAAAGAAAAAGAGAGAGAACTCAGAAACCCATGTCAGAGCATCGTGGTTATTTGCTTCTTATGGACCTTGCCGACCAATTCCACTACGATTTTGCAGAAGTTGGGTTATGAGCAAACTCGAGCTCTCCGGCTCTCTCTCTCTTCCGAAACGATCAGCGCAGAGCTTGTATCTCTCTGAGCCAAGCATCTCTTGTAAGGCACGAACCCCTTCTTACTCTCATTTGCATTACCTCTTCCTACCAAACAAGGCTCTTGACATTCTACTTCTGGGCTCTGGGTTTCATTTTTATCCTTTCTGGGGGAGCCAGAACATGAATCCGCAAAAGAACTCTCCTGGGAATTGTCATTTTGGATCCTTTCTTCCATAATATGGTCAGTAGATGTTCCAGTTGAAGTTTGATCAGAAGGAGCAAGATAAAAATATGGCACATTTTGATACAAAGACCAACAAGTTTGAGGTGCATTAGGAAAGGCCTTAACATAAGGTACACTTTTGTCCTGATTCCCTAAGGTTAGTGTAGGTGCTCCACCAGGCGGCATATTCAAATCACCGTTGTTATCCATTCCAAGAGCTAAACTTACATCCATATGTTTTGACGGTAGCATCTCAACAGAATTCTCAGCAGACACTTTACACTCCCTCTTACTGTCACCTTCAAATGTCAAGGTTTCAGTGACTTCAAAATCAAGAAGGGATGGTTGTTTGTCATTAGTTACCATTACTGTCCTTCCAAAAAGCTTTATGCTTTTAACAGGAGAATGTAACTTGTTATCCACTTTCTTACTTGCTGATCCTGGCTTGAATTTCTGAATGATTAGGCACGAGATAAACAGATAAAAAAGTCAGGTCCTAGACATTCAGTCAAGTACATAGAGGAAATAAAGTGCAAGATTAAAAAAGCATTTCAAATTACCAGAGTTAAAAAGTCTTCTGGAAACTGCCCTGAGGTTGATTCGAGCGACAACATTCCTTTTTCTTCCCCAACATTTGATTTTGATGGAAGGTACAGCTCCCCCTTCCTAACAGGAGATAATCTAGTTGGCTGCATGTCAACAGCTTGTGAAATTGGCGATGGGCATCTATTATGTTGCTCCGAAACCGCAGAAATTTGATCATCCGAACTAAATGCAGTCAGTACAGAGGTAGGAGAGTGGGTCTCTTTTTCAGCAAGTGATAGGTTTGGGGATGGAGACCTCTCTGATTCTCTTGCAACTGATATTGCCTTAAGAGAATCGACTGCTTTACGAGGGTAAGGATGCAGTGGCTTCCTTTTTGGTCGAGGTGGAGGAATCTCAATTGGGTTAATGGAGCTCTCATTGCTTCCACTCGACTCTCGCACCACCTGAAACACAAAAGACAACATAAAATTTCAGGCAAGAATGGTCGTTCAAAACGTATGTAAGAAAATTACGTAATAGGTTTGGTGGCAATCTATTATGGTAAAAACATCCACTATCATTGTCTTCATATCTTGTTTGGTAATGATTATATAAATATATTTTTGGGTACTAAAACAAAAGGCATTTTTGACCTTAGAGAAGAATTTCTGAGCATGGCTTCGGATCTGAACAGCAGTTTTGGTGCCTACATGTTCTGCAGGAAGATCAAGGTAGCACTAAATGACGGTTTGGGTATTGCAAATACCAGATTCATACAATTGATTTCAAACTGCCTTACCTTTGATCTGACGCCAGCCACGACCGTAGAGTTTCAGAGCTTCGAGAAATCTTTGATGCTCTTCCTCTGTCCATTTTTCCCTTTGTTTTGAAATAGTGTAGGGCTTCCTAACCTGTTCATGCATAAGAATTCCATTTCAATTCAAAGCATAACCCTTTCAGAAAAGAAAAAGGAGAAGTGAATAGAATTAAATTTTGTCACCTTCAATGCATTTTCATTGCCATAGGAGGATAGGGAGCTAACTCGCATCAGTG

mRNA sequence

CTTATAATTTGTTACTGTGATACGGTGCCGTTGTGGAGATATGGACTCTGAGAAAAAAGAGGTAGACTCCCCTATGATTATTACGGATTGCGAATTCCTCGAAATCAAACTGTTATAGCGGCTTTCGGGTGAAACGCCGGAGAAGACGAAAATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCAAAACCCTTCTTTCTGCTTCAGACTACTCATCACAACAATATCCGTTCAACCGAGACGCATATGCGATTTCAAAGCTTTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGAGTCACCGCTCTTTTCAGTGGCATGTGTCTCTTCTTCACCTTCTCCCAGAAGATACTCGCCTTCAACCAGACTCTACGTCAGTGGACTTTCATTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGGTCTCAATCTGGTGATGGATAGAGTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAGTCTCAAAAAGCTATCGAAGGAATGCACGGCAAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAATTGCAAAACCCAGATCGGAGCTACGCCAAGGCCTTAAAGAAAACTCTAGCTAATGCATGCTAGTATATAGGCATCATTGTACTCTAAAGTTCAGATTCATTTTTATGAGAGCTGTAACATATTTTAGGGATATATATAACTAATGGTTGCGCTCTGCATTGTTATTGGTTTTCGAAAGCTTGGTCTGATTGTATGGTTATAATATAGTCAAAGTGTATTTAAGAGCAGTGTTCTGTCTTGAAATTAAATGATATTAATATCGAGGAATTGGTAAATTGGATAACCTAACCAAACATGAACTTCTGAGGCAAAGTTTATGGTCAAGGTTCACAGGTTGTAACACGTATATGTGAATGCTTAAATCATGAGAAGCGCAGTTCTTTAGAAATAGTAAGAGGACTTTTAGGCGTGTTGATTGATACCGGACATGTACCCGTGAGGGAGAGTGTGGGACATAGTTCGAACAAACAAGAAGGGCCCCTTCCTGTTCCGTCCGTGCTGAATTCTGTCTTTAGGAACAAAGATATAATTAAAGTCAACGATTCCCTTGGAATCACAGGCACCTATAGAATTTTGAAGTCTATTTAAACAAATAAGTTTCCTCAGATTTTGTACTTGGTTGTTCATGAACCATCAGTGTACTGCACATTAAAACTGATAATTAATGATATTGACTTTCTAATGACAAATGTTGTGGTCAAGGTGTTGGAGAATAAAGGGGGAATTTTCCCATCACTTCGGATCTGTATTTTGAGTTATATTACTCTAGATGAGAGAACGGATGTTAACAAACTAATATTGAGACGAGTGTTCAAGATGGCCACTGATTAAATGCTGGAAAGGAGGATTCACTTGTCGCAGTTTTGCTCGTCATTCTTCACCTTCAGGAAGATTAAGTATTTGATAGTTAAACATTTTGGTCTTCAAATTGAACTAGTTTGTTCAAAGATAGGTTAAAGATTAATTGTATCTCTCTTACAAGCTCTATTCGCCTAGAAATTTAACTTTTCCATTATGAAGATAAGAATTAGAAAGAAAAACCTCCAAAAATAACATTTGCAAATATGTTAAAAGTCATGGAGCAACATCCTTCTGCTTTACAGAATGAATAATTGTCACTCAAATACCCACCCCCCCCCCCCCCCCCCCCCCCCCCCAATGTTAAATCAAACCTCGATCCTTCTGTTTGTTTACTTTAGATGTGATATGCTACAAATCAGGCCTCCATTTTTTCATCTCAAAGAAAAAGAGAGAGAACTCAGAAACCCATGTCAGAGCATCGTGGTTATTTGCTTCTTATGGACCTTGCCGACCAATTCCACTACGATTTTGCAGAAGTTGGGTTATGAGCAAACTCGAGCTCTCCGGCTCTCTCTCTCTTCCGAAACGATCAGCGCAGAGCTTGTATCTCTCTGAGCCAAGCATCTCTTAACATGAATCCGCAAAAGAACTCTCCTGGGAATTGTCATTTTGGATCCTTTCTTCCATAATATGGTCAGTAGATGTTCCAGTTGAAGTTTGATCAGAAGGAGCAAGATAAAAATATGGCACATTTTGATACAAAGACCAACAAGTTTGAGGTGCATTAGGAAAGGCCTTAACATAAGGTACACTTTTGTCCTGATTCCCTAAGGTTAGTGTAGGTGCTCCACCAGGCGGCATATTCAAATCACCGTTGTTATCCATTCCAAGAGCTAAACTTACATCCATATGTTTTGACGGTAGCATCTCAACAGAATTCTCAGCAGACACTTTACACTCCCTCTTACTGTCACCTTCAAATGTCAAGGTTTCAGTGACTTCAAAATCAAGAAGGGATGGTTGTTTGTCATTAGTTACCATTACTGTCCTTCCAAAAAGCTTTATGCTTTTAACAGGAGAATGTAACTTGTTATCCACTTTCTTACTTGCTGATCCTGGCTTGAATTTCTGAATGATTAGGCACGAGATAAACAGATAAAAAAGTCAGGTCCTAGACATTCAGTCAAGTACATAGAGGAAATAAAGTGCAAGATTAAAAAAGCATTTCAAATTACCAGAGTTAAAAAGTCTTCTGGAAACTGCCCTGAGGTTGATTCGAGCGACAACATTCCTTTTTCTTCCCCAACATTTGATTTTGATGGAAGGTACAGCTCCCCCTTCCTAACAGGAGATAATCTAGTTGGCTGCATGTCAACAGCTTGTGAAATTGGCGATGGGCATCTATTATGTTGCTCCGAAACCGCAGAAATTTGATCATCCGAACTAAATGCAGTCAGTACAGAGGTAGGAGAGTGGGTCTCTTTTTCAGCAAGTGATAGGTTTGGGGATGGAGACCTCTCTGATTCTCTTGCAACTGATATTGCCTTAAGAGAATCGACTGCTTTACGAGGGTAAGGATGCAGTGGCTTCCTTTTTGGTCGAGGTGGAGGAATCTCAATTGGGTTAATGGAGCTCTCATTGCTTCCACTCGACTCTCGCACCACCTGAAACACAAAAGACAACATAAAATTTCAGGCAAGAATGGTCGTTCAAAACGTATGTAAGAAAATTACGTAATAGGTTTGGTGGCAATCTATTATGGTAAAAACATCCACTATCATTGTCTTCATATCTTGTTTGGTAATGATTATATAAATATATTTTTGGGTACTAAAACAAAAGGCATTTTTGACCTTAGAGAAGAATTTCTGAGCATGGCTTCGGATCTGAACAGCAGTTTTGGTGCCTACATGTTCTGCAGGAAGATCAAGGTAGCACTAAATGACGGTTTGGGTATTGCAAATACCAGATTCATACAATTGATTTCAAACTGCCTTACCTTTGATCTGACGCCAGCCACGACCGTAGAGTTTCAGAGCTTCGAGAAATCTTTGATGCTCTTCCTCTGTCCATTTTTCCCTTTGTTTTGAAATAGTGTAGGGCTTCCTAACCTGTTCATGCATAAGAATTCCATTTCAATTCAAAGCATAACCCTTTCAGAAAAGAAAAAGGAGAAGTGAATAGAATTAAATTTTGTCACCTTCAATGCATTTTCATTGCCATAGGAGGATAGGGAGCTAACTCGCATCAGTG

Coding sequence (CDS)

ATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCAAAACCCTTCTTTCTGCTTCAGACTACTCATCACAACAATATCCGTTCAACCGAGACGCATATGCGATTTCAAAGCTTTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGAGTCACCGCTCTTTTCAGTGGCATGTGTCTCTTCTTCACCTTCTCCCAGAAGATACTCGCCTTCAACCAGACTCTACGTCAGTGGACTTTCATTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGGTCTCAATCTGGTGATGGATAGAGTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAGTCTCAAAAAGCTATCGAAGGAATGCACGGCAAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAATTGCAAAACCCAGATCGGAGCTACGCCAAGGCCTTAAAGAAAACTCTAGCTAA

Protein sequence

MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQSISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEGLNLVMDRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS
Homology
[Close]
BLAST of Cmc12g0338921 vs. NCBI nr
Match: XP_008439477.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cucumis melo])

HSP 1 Score: 336.7 bits (862), Expect = 1.3e-88
Identity = 175/177 (98.87%), Postives = 176/177 (99.44%), Query Frame = 0 

Query: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEGLNLVMD 120
           ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVE +NLVMD
Sbjct: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVE-VNLVMD 120

Query: 121 RVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 178
           RVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS
Sbjct: 121 RVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 176

[Close]
BLAST of Cmc12g0338921 vs. NCBI nr
Match: XP_011649648.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 300.4 bits (768), Expect = 9.9e-78
Identity = 159/181 (87.85%), Postives = 169/181 (93.37%), Query Frame = 0 

Query: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFF LQTTHH++I STET MR +S QSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSP----SPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEGLN 120
           IS+S LFSVACVSSSP    SPRRY+PSTRLY+SGLSFRTTEESLRNAFKSFGQLVE +N
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVE-VN 120

Query: 121 LVMDRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENS 178
           LVMDR+ANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVE+AK RSELRQGL+ENS
Sbjct: 121 LVMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENS 180

[Close]
BLAST of Cmc12g0338921 vs. NCBI nr
Match: XP_038895072.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 295.4 bits (755), Expect = 3.2e-76
Identity = 154/179 (86.03%), Postives = 163/179 (91.06%), Query Frame = 0 

Query: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGL FTV AAPKPFF  Q THHNNIRSTETH R  S +S+LAYSSTPLPFFS RKT S
Sbjct: 1   MTAGLPFTVAAAPKPFFQFQITHHNNIRSTETHTRIHSIRSQLAYSSTPLPFFSVRKTHS 60

Query: 61  ISESPLFSVACVSS--SPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEGLNLV 120
           IS+SPLFS+AC SS  SPSPRRY+PSTRLYVSGLSFRTTEESLRNAFKSFGQLVE +NLV
Sbjct: 61  ISDSPLFSLACASSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVE-VNLV 120

Query: 121 MDRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 178
           MD+VANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVE+AK RSELRQGLKENSS
Sbjct: 121 MDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLKENSS 178

[Close]
BLAST of Cmc12g0338921 vs. NCBI nr
Match: TYJ98869.1 (glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 285.8 bits (730), Expect = 2.5e-73
Identity = 149/152 (98.03%), Postives = 150/152 (98.68%), Query Frame = 0 

Query: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEGLNLVMD 120
           ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVE +NLVMD
Sbjct: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVE-VNLVMD 120

Query: 121 RVANRPRGFAFLRYASEEESQKAIEGMHGKFL 153
           RVANRPRGFAFLRYASEEESQKAIEGMHGK L
Sbjct: 121 RVANRPRGFAFLRYASEEESQKAIEGMHGKAL 151

[Close]
BLAST of Cmc12g0338921 vs. NCBI nr
Match: XP_016901816.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 [Cucumis melo])

HSP 1 Score: 285.0 bits (728), Expect = 4.3e-73
Identity = 148/150 (98.67%), Postives = 149/150 (99.33%), Query Frame = 0 

Query: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEGLNLVMD 120
           ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVE +NLVMD
Sbjct: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVE-VNLVMD 120

Query: 121 RVANRPRGFAFLRYASEEESQKAIEGMHGK 151
           RVANRPRGFAFLRYASEEESQKAIEGMHGK
Sbjct: 121 RVANRPRGFAFLRYASEEESQKAIEGMHGK 149

[Close]
BLAST of Cmc12g0338921 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 9.5e-31
Identity = 71/117 (60.68%), Postives = 89/117 (76.07%), Query Frame = 0 

Query: 54  SARKTQSISESPLFSVACVSSSPSPRRYS--PSTRLYVSGLSFRTTEESLRNAFKSFGQL 113
           SAR+ + I    + S     SS SP   S  P T+LYVSGLSFRTTE++LR+ F+ FG L
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103

Query: 114 VEGLNLVMDRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSEL 169
           +  +N+VMD+VANRP+GFAFLRY +EEE+ KAI+GMHGKFLDGRVIFVE AK RS++
Sbjct: 104 IH-MNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDM 159

[Close]
BLAST of Cmc12g0338921 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.5e-20
Identity = 51/104 (49.04%), Postives = 69/104 (66.35%), Query Frame = 0 

Query: 73  SSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEGLNLVMDRVANRPRGFAFL 132
           S +P+  +  PST L+VSGLS RTT E LR AF  FG++ +   +V DRV+   +GF F+
Sbjct: 44  SQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADA-KVVTDRVSGYSKGFGFV 103

Query: 133 RYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENS 177
           RYA+ E+S K I GM GKFLDG VIF E A+PR + +    +N+
Sbjct: 104 RYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNN 146

[Close]
BLAST of Cmc12g0338921 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.0e-16
Identity = 48/109 (44.04%), Postives = 72/109 (66.06%), Query Frame = 0 

Query: 66  LFSVACVSSSPS---PRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEGLNLVMDRV 125
           L SV  ++SS S    +R   +++L++ GLSF TTE+ L  AF   GQ+VE   +VMDRV
Sbjct: 12  LKSVCLINSSASCFFTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEA-QIVMDRV 71

Query: 126 ANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQG 172
           ++R +GF F+ +AS +E+QKA+   +G+ L+GR IFV+ AK +  L  G
Sbjct: 72  SDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGG 119

[Close]
BLAST of Cmc12g0338921 vs. ExPASy Swiss-Prot
Match: C0HFE5 (Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=ORRM1 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.6e-16
Identity = 39/84 (46.43%), Postives = 64/84 (76.19%), Query Frame = 0 

Query: 86  RLYVSGLSFRTTEESLRNAFKSFGQLVEGLNLVMDRVANRPRGFAFLRYASEEESQKAIE 145
           RL+V+GLSF T+E++LR AF+ FG+LVE + ++MDR++ R +G+AF+ Y +EE    A++
Sbjct: 300 RLFVTGLSFYTSEKTLRAAFEPFGELVE-VKIIMDRISKRSKGYAFVEYTTEEAGGAALK 359

Query: 146 GMHGKFLDGRVIFVEIAKPRSELR 170
            M+G+ ++G +I V++AK RS  R
Sbjct: 360 AMNGQIINGWMIVVDVAKTRSRDR 382

[Close]
BLAST of Cmc12g0338921 vs. ExPASy Swiss-Prot
Match: Q6YWP9 (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-15
Identity = 41/97 (42.27%), Postives = 70/97 (72.16%), Query Frame = 0 

Query: 74  SSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEGLNLVMDRVANRPRGFAFLR 133
           SS + +    + RL+V+GLSF T+E++LR AF+ FG+LVE + ++MD+++ R +G+AF+ 
Sbjct: 284 SSEATQAEVKTKRLFVTGLSFYTSEKTLRAAFEPFGELVE-VKIIMDKISKRSKGYAFIE 343

Query: 134 YASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQ 171
           Y +EE    A++ M+G+ ++G +I V++AK RS  RQ
Sbjct: 344 YTTEEAGGAALKAMNGQIINGWMIVVDVAKHRSRDRQ 379

[Close]
BLAST of Cmc12g0338921 vs. ExPASy TrEMBL
Match: A0A1S3AYF6 (glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484245 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 6.1e-89
Identity = 175/177 (98.87%), Postives = 176/177 (99.44%), Query Frame = 0 

Query: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEGLNLVMD 120
           ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVE +NLVMD
Sbjct: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVE-VNLVMD 120

Query: 121 RVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 178
           RVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS
Sbjct: 121 RVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 176

[Close]
BLAST of Cmc12g0338921 vs. ExPASy TrEMBL
Match: A0A0A0LQB8 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.8e-78
Identity = 159/181 (87.85%), Postives = 169/181 (93.37%), Query Frame = 0 

Query: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFF LQTTHH++I STET MR +S QSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSP----SPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEGLN 120
           IS+S LFSVACVSSSP    SPRRY+PSTRLY+SGLSFRTTEESLRNAFKSFGQLVE +N
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVE-VN 120

Query: 121 LVMDRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENS 178
           LVMDR+ANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVE+AK RSELRQGL+ENS
Sbjct: 121 LVMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENS 180

[Close]
BLAST of Cmc12g0338921 vs. ExPASy TrEMBL
Match: A0A5D3BIP7 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00650 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.2e-73
Identity = 149/152 (98.03%), Postives = 150/152 (98.68%), Query Frame = 0 

Query: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEGLNLVMD 120
           ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVE +NLVMD
Sbjct: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVE-VNLVMD 120

Query: 121 RVANRPRGFAFLRYASEEESQKAIEGMHGKFL 153
           RVANRPRGFAFLRYASEEESQKAIEGMHGK L
Sbjct: 121 RVANRPRGFAFLRYASEEESQKAIEGMHGKAL 151

[Close]
BLAST of Cmc12g0338921 vs. ExPASy TrEMBL
Match: A0A1S4E0R2 (glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484245 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 2.1e-73
Identity = 148/150 (98.67%), Postives = 149/150 (99.33%), Query Frame = 0 

Query: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEGLNLVMD 120
           ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVE +NLVMD
Sbjct: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVE-VNLVMD 120

Query: 121 RVANRPRGFAFLRYASEEESQKAIEGMHGK 151
           RVANRPRGFAFLRYASEEESQKAIEGMHGK
Sbjct: 121 RVANRPRGFAFLRYASEEESQKAIEGMHGK 149

[Close]
BLAST of Cmc12g0338921 vs. ExPASy TrEMBL
Match: A0A5A7SXY0 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00550 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 6.1e-73
Identity = 148/152 (97.37%), Postives = 149/152 (98.03%), Query Frame = 0 

Query: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFF LQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEGLNLVMD 120
           ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVE +NLVMD
Sbjct: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVE-VNLVMD 120

Query: 121 RVANRPRGFAFLRYASEEESQKAIEGMHGKFL 153
           RVANRPRGFAFLRYASEEESQKAIEGMHGK L
Sbjct: 121 RVANRPRGFAFLRYASEEESQKAIEGMHGKAL 151

[Close]
BLAST of Cmc12g0338921 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 134.8 bits (338), Expect = 6.7e-32
Identity = 71/117 (60.68%), Postives = 89/117 (76.07%), Query Frame = 0 

Query: 54  SARKTQSISESPLFSVACVSSSPSPRRYS--PSTRLYVSGLSFRTTEESLRNAFKSFGQL 113
           SAR+ + I    + S     SS SP   S  P T+LYVSGLSFRTTE++LR+ F+ FG L
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103

Query: 114 VEGLNLVMDRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSEL 169
           +  +N+VMD+VANRP+GFAFLRY +EEE+ KAI+GMHGKFLDGRVIFVE AK RS++
Sbjct: 104 IH-MNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDM 159

[Close]
BLAST of Cmc12g0338921 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 98.6 bits (244), Expect = 5.3e-21
Identity = 51/104 (49.04%), Postives = 69/104 (66.35%), Query Frame = 0 

Query: 73  SSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEGLNLVMDRVANRPRGFAFL 132
           S +P+  +  PST L+VSGLS RTT E LR AF  FG++ +   +V DRV+   +GF F+
Sbjct: 44  SQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADA-KVVTDRVSGYSKGFGFV 103

Query: 133 RYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENS 177
           RYA+ E+S K I GM GKFLDG VIF E A+PR + +    +N+
Sbjct: 104 RYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNN 146

[Close]
BLAST of Cmc12g0338921 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 90.1 bits (222), Expect = 1.9e-18
Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = 0 

Query: 84  STRLYVSGLSFRTTEESLRNAFKSFGQLVEGLNLVMDRVANRPRGFAFLRYASEEESQKA 143
           S +L+VS LS  TT++SLR  F  FGQ+ E   L+ D    RP+GF F+ + SE++++KA
Sbjct: 6   SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEA-RLIRDSETQRPKGFGFITFDSEDDARKA 65

Query: 144 IEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 178
           ++ + GK +DGR+IFVE+AK   E+R G+  N +
Sbjct: 66  LKSLDGKIVDGRLIFVEVAKNAEEVRAGINSNKA 98

[Close]
BLAST of Cmc12g0338921 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 86.7 bits (213), Expect = 2.1e-17
Identity = 48/109 (44.04%), Postives = 72/109 (66.06%), Query Frame = 0 

Query: 66  LFSVACVSSSPS---PRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEGLNLVMDRV 125
           L SV  ++SS S    +R   +++L++ GLSF TTE+ L  AF   GQ+VE   +VMDRV
Sbjct: 12  LKSVCLINSSASCFFTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEA-QIVMDRV 71

Query: 126 ANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQG 172
           ++R +GF F+ +AS +E+QKA+   +G+ L+GR IFV+ AK +  L  G
Sbjct: 72  SDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGG 119

[Close]
BLAST of Cmc12g0338921 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 85.5 bits (210), Expect = 4.7e-17
Identity = 51/112 (45.54%), Postives = 70/112 (62.50%), Query Frame = 0 

Query: 58  TQSISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEGLNL 117
           + S+  SP   V   S+  SP       RL+VSGLS  TT E L++AF SFGQLV+   +
Sbjct: 14  SSSLLSSPSLCVRRCSTLTSP-------RLFVSGLSRLTTNEKLQDAFASFGQLVDA-RV 73

Query: 118 VMDRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELR 170
           + DR + R +GF F+ YA+ E+++KA   M+ KFLDG VIFV+ A+PR   R
Sbjct: 74  ITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREPRR 117

The following BLAST results are available for this feature:
BLAST of Cmc12g0338921 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008439477.11.3e-8898.87PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cu... [more]
XP_011649648.19.9e-7887.85organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Cucumis sat... [more]
XP_038895072.13.2e-7686.03organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa h... [more]
TYJ98869.12.5e-7398.03glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa][more]
XP_016901816.14.3e-7398.67PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 [Cu... [more]
BLAST of Cmc12g0338921 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FX459.5e-3160.68Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana... [more]
Q9FIU67.5e-2049.04Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana... [more]
Q9FFZ63.0e-1644.04Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S... [more]
C0HFE58.6e-1646.43Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=... [more]
Q6YWP91.1e-1542.27Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. ... [more]
BLAST of Cmc12g0338921 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3AYF66.1e-8998.87glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis mel... [more]
A0A0A0LQB84.8e-7887.85RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV... [more]
A0A5D3BIP71.2e-7398.03Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A1S4E0R22.1e-7398.67glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 OS=Cucumis mel... [more]
A0A5A7SXY06.1e-7397.37Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C... [more]
BLAST of Cmc12g0338921 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G73530.16.7e-3260.68RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G54580.15.3e-2149.04RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT3G46020.11.9e-1844.68RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G06210.12.1e-1744.04RNA binding (RRM/RBD/RNP motifs) family protein [more]
AT2G37510.14.7e-1745.54RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 86..160
e-value: 1.8E-21
score: 87.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 87..157
e-value: 3.6E-17
score: 61.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 85..164
score: 17.028851
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 32..173
e-value: 4.7E-28
score: 100.1
NoneNo IPR availablePANTHERPTHR15241TRANSFORMER-2-RELATEDcoord: 6..176
NoneNo IPR availablePANTHERPTHR15241:SF328RNA-BINDING PROTEIN 1coord: 6..176
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 69..171

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc12g0338921.1Cmc12g0338921.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1900871 chloroplast mRNA modification
biological_process GO:0016554 cytidine to uridine editing
cellular_component GO:0009507 chloroplast
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding