Cmc12g0337471 (gene) Melon (Charmono) v1.1

Overview
NameCmc12g0337471
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionUnknown protein
LocationCMiso1.1chr12: 25499279 .. 25500352 (+)
RNA-Seq ExpressionCmc12g0337471
SyntenyCmc12g0337471
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCATTTAAGACGCGGTGATCATCATTATGATTCAGCATACAAGAGAGAAGAGAAGAGAAGAGAAGAAAAGAAAAGAAAAAAAAAAAAGGTGGCCGCTCTTACAAATCTCCGTCTTTGATTTCAACGATTGTCATCGAGAAATGCTCTGAGCTTTTAGATCGCCGCTCCGGTATCGAAGGATTTGTGTCTGGGATTTGGGAATGGAGAGGGAAAAGAGGAAGGAAATGTCAGCGGAGGAGAACGGGGGAGTGGTTGAAGAGATGAAGAGGAGGAAGAAGAAGAAGAAGAAGATAAGGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAGGCGGCGGGGGTGGAGGAACCGTCGACAGAGGAGGTGGAGGAATTTTATGCCATTTTGAGGAGAATGGATGTGGCTTTGCGGTACTTGAAAGGGAAGAGACTGCCGGAGAAAAGAACGACGACGGGTGAGACGGCGGTGGTTGGGGAAAATAAGGAACTGAATTTGAATTTGAATGAAGTGCCTTCAGATTCTAGTAACTAATTTGAACAATGAGAGGAGAAGAAGAACTAAGAAGAGGCTGTCTCGGGGGAGTTTTGTTTGTTCATCGTGTTTTACGCTTAACTTTGCTAATCCCTTTTGTAAATATTAATCGTAAAATAATAATTTAAATTAATTACCTTAATTTGTTTCCATAATTTTAATTAATTTCCTTAATTTGTTTCCATACTTCTTAATTACCATATTCTCATTCGTGATTTTTCTTCTTGCTAAAACTCAAAAGAAAGAAATACACACACACACACACACACATATACATACTTTATTCATTCATTTATTTAAGTGTAATTAATGCATGGCGTTATATAGAAGGGTGGTAGAATTTTTTTCTATAGAAGGCTTGAATTTTCGTTGAAGGGTGGTTGAATTTTCTCTGTTTTAATTTTTAAAAATGTTCAAACTTTTCTTTAGAACTATTATGGGTATATGGGACAAATATTTGAACTAGATAAGATGTTATTGGAACTGTTAAATTGTACAAATTGTATGCTATTATCAATTTAGACTAACATTCTGTAGGGT

mRNA sequence

CTCATTTAAGACGCGGTGATCATCATTATGATTCAGCATACAAGAGAGAAGAGAAGAGAAGAGAAGAAAAGAAAAGAAAAAAAAAAAAGGTGGCCGCTCTTACAAATCTCCGTCTTTGATTTCAACGATTGTCATCGAGAAATGCTCTGAGCTTTTAGATCGCCGCTCCGGTATCGAAGGATTTGTGTCTGGGATTTGGGAATGGAGAGGGAAAAGAGGAAGGAAATGTCAGCGGAGGAGAACGGGGGAGTGGTTGAAGAGATGAAGAGGAGGAAGAAGAAGAAGAAGAAGATAAGGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAGGCGGCGGGGGTGGAGGAACCGTCGACAGAGGAGGTGGAGGAATTTTATGCCATTTTGAGGAGAATGGATGTGGCTTTGCGGTACTTGAAAGGGAAGAGACTGCCGGAGAAAAGAACGACGACGGGTGAGACGGCGGTGGTTGGGGAAAATAAGGAACTGAATTTGAATTTGAATGAAGTGCCTTCAGATTCTAGTAACTAATTTGAACAATGAGAGGAGAAGAAGAACTAAGAAGAGGCTGTCTCGGGGGAGTTTTGTTTGTTCATCGTGTTTTACGCTTAACTTTGCTAATCCCTTTTGTAAATATTAATCGTAAAATAATAATTTAAATTAATTACCTTAATTTGTTTCCATAATTTTAATTAATTTCCTTAATTTGTTTCCATACTTCTTAATTACCATATTCTCATTCGTGATTTTTCTTCTTGCTAAAACTCAAAAGAAAGAAATACACACACACACACACACACATATACATACTTTATTCATTCATTTATTTAAGTGTAATTAATGCATGGCGTTATATAGAAGGGTGGTAGAATTTTTTTCTATAGAAGGCTTGAATTTTCGTTGAAGGGTGGTTGAATTTTCTCTGTTTTAATTTTTAAAAATGTTCAAACTTTTCTTTAGAACTATTATGGGTATATGGGACAAATATTTGAACTAGATAAGATGTTATTGGAACTGTTAAATTGTACAAATTGTATGCTATTATCAATTTAGACTAACATTCTGTAGGGT

Coding sequence (CDS)

ATGGAGAGGGAAAAGAGGAAGGAAATGTCAGCGGAGGAGAACGGGGGAGTGGTTGAAGAGATGAAGAGGAGGAAGAAGAAGAAGAAGAAGATAAGGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAGGCGGCGGGGGTGGAGGAACCGTCGACAGAGGAGGTGGAGGAATTTTATGCCATTTTGAGGAGAATGGATGTGGCTTTGCGGTACTTGAAAGGGAAGAGACTGCCGGAGAAAAGAACGACGACGGGTGAGACGGCGGTGGTTGGGGAAAATAAGGAACTGAATTTGAATTTGAATGAAGTGCCTTCAGATTCTAGTAACTAA

Protein sequence

MEREKRKEMSAEENGGVVEEMKRRKKKKKKIRKEEEEEEEEEKEAAGVEEPSTEEVEEFYAILRRMDVALRYLKGKRLPEKRTTTGETAVVGENKELNLNLNEVPSDSSN
Homology
[Close]
BLAST of Cmc12g0337471 vs. NCBI nr
Match: KGN64116.1 (hypothetical protein Csa_013670 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 5.0e-27
Identity = 87/110 (79.09%), Postives = 92/110 (83.64%), Query Frame = 0 

Query: 1   MEREKRKEMSAEENGGVVEEMKRRKKKKKKIRKEEEEEEEEEKEAAGVEEPSTEEVEEFY 60
           MEREKRKEMS  E GGVVEEMKRRKKKK K    +EEE++E   AA VEEPSTEEVEEFY
Sbjct: 1   MEREKRKEMSEGEKGGVVEEMKRRKKKKIK----KEEEKKEAVAAAEVEEPSTEEVEEFY 60

Query: 61  AILRRMDVALRYLKGKRLPEKRTTTGETAVVGENKELNLNLNEVPSDSSN 111
           AILRRMD ALRYLKGKR+PE+RTT GETAV  ENKE  LNLNEVPSDSSN
Sbjct: 61  AILRRMDEALRYLKGKRVPERRTTMGETAVAVENKE--LNLNEVPSDSSN 104

[Close]
BLAST of Cmc12g0337471 vs. NCBI nr
Match: KAG6584363.1 (hypothetical protein SDJN03_20295, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-13
Identity = 67/113 (59.29%), Postives = 76/113 (67.26%), Query Frame = 0 

Query: 1   MEREKRKEMSAEENGGVVEEMKRRKKKKKKIRKEEEEEEEEEKEAAGVEEPSTEEVEEFY 60
           MEREKRK+MS  E         +  K+ KK RKEE E          +EEP+TEEVEEFY
Sbjct: 1   MEREKRKKMSPGE---------KETKRSKKTRKEEREAAAAAGVETEMEEPTTEEVEEFY 60

Query: 61  AILRRMDVALRYLKGKRLPEKRTTTGETAVVGENKE---LNLNLNEVPSDSSN 111
           AILRRMDVALRYLKGKR+ E+R TT ETAVVG  K      LNLNEVP+DS+N
Sbjct: 61  AILRRMDVALRYLKGKRVVERR-TTAETAVVGTGKGQEIQELNLNEVPADSTN 103

[Close]
BLAST of Cmc12g0337471 vs. ExPASy TrEMBL
Match: A0A0A0LVR0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042280 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.4e-27
Identity = 87/110 (79.09%), Postives = 92/110 (83.64%), Query Frame = 0 

Query: 1   MEREKRKEMSAEENGGVVEEMKRRKKKKKKIRKEEEEEEEEEKEAAGVEEPSTEEVEEFY 60
           MEREKRKEMS  E GGVVEEMKRRKKKK K    +EEE++E   AA VEEPSTEEVEEFY
Sbjct: 1   MEREKRKEMSEGEKGGVVEEMKRRKKKKIK----KEEEKKEAVAAAEVEEPSTEEVEEFY 60

Query: 61  AILRRMDVALRYLKGKRLPEKRTTTGETAVVGENKELNLNLNEVPSDSSN 111
           AILRRMD ALRYLKGKR+PE+RTT GETAV  ENKE  LNLNEVPSDSSN
Sbjct: 61  AILRRMDEALRYLKGKRVPERRTTMGETAVAVENKE--LNLNEVPSDSSN 104

The following BLAST results are available for this feature:
BLAST of Cmc12g0337471 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64116.15.0e-2779.09hypothetical protein Csa_013670 [Cucumis sativus][more]
KAG6584363.11.8e-1359.29hypothetical protein SDJN03_20295, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Cmc12g0337471 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc12g0337471 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVR02.4e-2779.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042280 PE=4 SV=1[more]
BLAST of Cmc12g0337471 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 17..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc12g0337471.1Cmc12g0337471.1mRNA