Cmc12g0329291 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc12g0329291
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrotransposon protein
Location	CMiso1.1chr12: 20573537 .. 20574145 (-)
RNA-Seq Expression	Cmc12g0329291
Synteny	Cmc12g0329291

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTGGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTTGCTCATGACGTGAAGAACCGCGTCATCCAACGGGAATTTGTACGGTCCGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCCGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACTTGTTTCGGTAACAAGTAACTGCAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATCATAGAAACTCACTATATTTCACCTTTACGTACATCACACTTAATTGAACGTGTTTATTTCAACTTGCAGAACTGCCTTGGCGCGTTAGATGGGACGTACATAAAGGTCAACGTCCTCGCAGGAGATCGGCCTACATTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCCGCAGCAGACTCGCGGATCCTACGTGATGCGATTTCACGAGAAAATGGACTACAAGTGCCAAAGGGTATAACTTCTTTATAA

mRNA sequence

ATGGATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTGGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTTGCTCATGACGTGAAGAACCGCGTCATCCAACGGGAATTTGTACGGTCCGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCCGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACTTGTTTCGGTAACAAGTAACTGCAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATCATAGAAACTCACTATATTTCACCTTTACGTACATCACACTTAATTGAACGTGTTTATTTCAACTTGCAGAACTGCCTTGGCGCGTTAGATGGGACGTACATAAAGGTCAACGTCCTCGCAGGAGATCGGCCTACATTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCCGCAGCAGACTCGCGGATCCTACGTGATGCGATTTCACGAGAAAATGGACTACAAGTGCCAAAGGGTATAACTTCTTTATAA

Coding sequence (CDS)

ATGGATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTGGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTTGCTCATGACGTGAAGAACCGCGTCATCCAACGGGAATTTGTACGGTCCGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCCGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACTTGTTTCGGTAACAAGTAACTGCAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATCATAGAAACTCACTATATTTCACCTTTACGTACATCACACTTAATTGAACGTGTTTATTTCAACTTGCAGAACTGCCTTGGCGCGTTAGATGGGACGTACATAAAGGTCAACGTCCTCGCAGGAGATCGGCCTACATTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCCGCAGCAGACTCGCGGATCCTACGTGATGCGATTTCACGAGAAAATGGACTACAAGTGCCAAAGGGTATAACTTCTTTATAA

Protein sequence

MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRLVSVTSNCNDQRWKCFEVGIIETHYISPLRTSHLIERVYFNLQNCLGALDGTYIKVNVLAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGITSL

Homology

[Close]

BLAST of Cmc12g0329291 vs. NCBI nr
Match: TYK27061.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 325.9 bits (834), Expect = 2.5e-85
Identity = 169/198 (85.35%), Postives = 169/198 (85.35%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 60
           MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIVLLAVLRLYEELIKRLVSVTSNCNDQRWKCFEVGIIETHYISPLRTSHLIERVYFN 120
           HFNIVLLAVLRLYEELIKR V VTSNCNDQRWKCFE                        
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE------------------------ 159

Query: 121 LQNCLGALDGTYIKVNVLAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS 180
             NCLGALDGTYIKVNV AGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS
Sbjct: 160 --NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS 211

Query: 181 RILRDAISRENGLQVPKG 199
           RILRDAISRENGLQVPKG
Sbjct: 220 RILRDAISRENGLQVPKG 211

[Close]

BLAST of Cmc12g0329291 vs. NCBI nr
Match: KAA0056561.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 325.9 bits (834), Expect = 2.5e-85
Identity = 169/198 (85.35%), Postives = 169/198 (85.35%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 60
           MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIVLLAVLRLYEELIKRLVSVTSNCNDQRWKCFEVGIIETHYISPLRTSHLIERVYFN 120
           HFNIVLLAVLRLYEELIKR V VTSNCNDQRWKCFE                        
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE------------------------ 159

Query: 121 LQNCLGALDGTYIKVNVLAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS 180
             NCLGALDGTYIKVNV AGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS
Sbjct: 160 --NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS 211

Query: 181 RILRDAISRENGLQVPKG 199
           RILRDAISRENGLQVPKG
Sbjct: 220 RILRDAISRENGLQVPKG 211

[Close]

BLAST of Cmc12g0329291 vs. NCBI nr
Match: KAA0064809.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 325.9 bits (834), Expect = 2.5e-85
Identity = 169/198 (85.35%), Postives = 169/198 (85.35%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 60
           MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIVLLAVLRLYEELIKRLVSVTSNCNDQRWKCFEVGIIETHYISPLRTSHLIERVYFN 120
           HFNIVLLAVLRLYEELIKR V VTSNCNDQRWKCFE                        
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE------------------------ 159

Query: 121 LQNCLGALDGTYIKVNVLAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS 180
             NCLGALDGTYIKVNV AGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS
Sbjct: 160 --NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS 211

Query: 181 RILRDAISRENGLQVPKG 199
           RILRDAISRENGLQVPKG
Sbjct: 220 RILRDAISRENGLQVPKG 211

[Close]

BLAST of Cmc12g0329291 vs. NCBI nr
Match: KAA0031556.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0033743.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0036353.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0038064.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0038976.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 325.9 bits (834), Expect = 2.5e-85
Identity = 169/198 (85.35%), Postives = 169/198 (85.35%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 60
           MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIVLLAVLRLYEELIKRLVSVTSNCNDQRWKCFEVGIIETHYISPLRTSHLIERVYFN 120
           HFNIVLLAVLRLYEELIKR V VTSNCNDQRWKCFE                        
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE------------------------ 159

Query: 121 LQNCLGALDGTYIKVNVLAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS 180
             NCLGALDGTYIKVNV AGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS
Sbjct: 160 --NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS 211

Query: 181 RILRDAISRENGLQVPKG 199
           RILRDAISRENGLQVPKG
Sbjct: 220 RILRDAISRENGLQVPKG 211

[Close]

BLAST of Cmc12g0329291 vs. NCBI nr
Match: KAA0035776.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 323.2 bits (827), Expect = 1.6e-84
Identity = 168/198 (84.85%), Postives = 168/198 (84.85%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 60
           MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIVLLAVLRLYEELIKRLVSVTSNCNDQRWKCFEVGIIETHYISPLRTSHLIERVYFN 120
           HFNIVLLAVLRLYEELIKR V VTSNCNDQRWKCFE                        
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE------------------------ 159

Query: 121 LQNCLGALDGTYIKVNVLAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS 180
             NCL ALDGTYIKVNV AGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS
Sbjct: 160 --NCLDALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS 211

Query: 181 RILRDAISRENGLQVPKG 199
           RILRDAISRENGLQVPKG
Sbjct: 220 RILRDAISRENGLQVPKG 211

[Close]

BLAST of Cmc12g0329291 vs. ExPASy TrEMBL
Match: A0A5D3D7X8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001080 PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.2e-85
Identity = 169/198 (85.35%), Postives = 169/198 (85.35%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 60
           MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIVLLAVLRLYEELIKRLVSVTSNCNDQRWKCFEVGIIETHYISPLRTSHLIERVYFN 120
           HFNIVLLAVLRLYEELIKR V VTSNCNDQRWKCFE                        
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE------------------------ 159

Query: 121 LQNCLGALDGTYIKVNVLAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS 180
             NCLGALDGTYIKVNV AGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS
Sbjct: 160 --NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS 211

Query: 181 RILRDAISRENGLQVPKG 199
           RILRDAISRENGLQVPKG
Sbjct: 220 RILRDAISRENGLQVPKG 211

[Close]

BLAST of Cmc12g0329291 vs. ExPASy TrEMBL
Match: A0A5A7VH63 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001170 PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.2e-85
Identity = 169/198 (85.35%), Postives = 169/198 (85.35%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 60
           MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIVLLAVLRLYEELIKRLVSVTSNCNDQRWKCFEVGIIETHYISPLRTSHLIERVYFN 120
           HFNIVLLAVLRLYEELIKR V VTSNCNDQRWKCFE                        
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE------------------------ 159

Query: 121 LQNCLGALDGTYIKVNVLAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS 180
             NCLGALDGTYIKVNV AGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS
Sbjct: 160 --NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS 211

Query: 181 RILRDAISRENGLQVPKG 199
           RILRDAISRENGLQVPKG
Sbjct: 220 RILRDAISRENGLQVPKG 211

[Close]

BLAST of Cmc12g0329291 vs. ExPASy TrEMBL
Match: A0A5D3DTQ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00550 PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.2e-85
Identity = 169/198 (85.35%), Postives = 169/198 (85.35%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 60
           MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIVLLAVLRLYEELIKRLVSVTSNCNDQRWKCFEVGIIETHYISPLRTSHLIERVYFN 120
           HFNIVLLAVLRLYEELIKR V VTSNCNDQRWKCFE                        
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE------------------------ 159

Query: 121 LQNCLGALDGTYIKVNVLAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS 180
             NCLGALDGTYIKVNV AGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS
Sbjct: 160 --NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS 211

Query: 181 RILRDAISRENGLQVPKG 199
           RILRDAISRENGLQVPKG
Sbjct: 220 RILRDAISRENGLQVPKG 211

[Close]

BLAST of Cmc12g0329291 vs. ExPASy TrEMBL
Match: A0A5A7UST8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00660 PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.2e-85
Identity = 169/198 (85.35%), Postives = 169/198 (85.35%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 60
           MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIVLLAVLRLYEELIKRLVSVTSNCNDQRWKCFEVGIIETHYISPLRTSHLIERVYFN 120
           HFNIVLLAVLRLYEELIKR V VTSNCNDQRWKCFE                        
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE------------------------ 159

Query: 121 LQNCLGALDGTYIKVNVLAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS 180
             NCLGALDGTYIKVNV AGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS
Sbjct: 160 --NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS 211

Query: 181 RILRDAISRENGLQVPKG 199
           RILRDAISRENGLQVPKG
Sbjct: 220 RILRDAISRENGLQVPKG 211

[Close]

BLAST of Cmc12g0329291 vs. ExPASy TrEMBL
Match: A0A5A7STY2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold708G00110 PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 7.9e-85
Identity = 167/198 (84.34%), Postives = 169/198 (85.35%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 60
           MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHD+KNRVIQREFVRSGETVSR
Sbjct: 45  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDMKNRVIQREFVRSGETVSR 104

Query: 61  HFNIVLLAVLRLYEELIKRLVSVTSNCNDQRWKCFEVGIIETHYISPLRTSHLIERVYFN 120
           HFNIVLLAVLRLYEELIKR V VTSNCNDQRWKCFE                        
Sbjct: 105 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE------------------------ 164

Query: 121 LQNCLGALDGTYIKVNVLAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS 180
             NCLGALDGTYIKVNV AGDRPTFRTRKG+IATNVLGVCDTKGDFVYVLAGWEGSAADS
Sbjct: 165 --NCLGALDGTYIKVNVPAGDRPTFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADS 216

Query: 181 RILRDAISRENGLQVPKG 199
           RILRDAISRENGLQVPKG
Sbjct: 225 RILRDAISRENGLQVPKG 216

[Close]

BLAST of Cmc12g0329291 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 112.8 bits (281), Expect = 3.1e-25
Identity = 66/198 (33.33%), Postives = 99/198 (50.00%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 60
           MD+  F  LC LL+    L  T  + +E  +A+FL ++ H+++ R +Q  F  SGET+SR
Sbjct: 48  MDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISR 107

Query: 61  HFNIVLLAVLRLYEELIKRLVSVTSNCNDQRWKCFEVGIIETHYISPLRTSHLIERVYFN 120
           HFN VL AV+ + ++                            +  P   S  +E     
Sbjct: 108 HFNNVLNAVIAISKD----------------------------FFQPNSNSDTLENDDPY 167

Query: 121 LQNCLGALDGTYIKVNVLAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS 180
            ++C+G +D  +I V V   ++  FR   G +  NVL        F YVLAGWEGSA+D 
Sbjct: 168 FKDCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQ 217

Query: 181 RILRDAISRENGLQVPKG 199
           ++L  A++R N LQVP+G
Sbjct: 228 QVLNAALTRRNKLQVPQG 217

[Close]

BLAST of Cmc12g0329291 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-16
Identity = 39/83 (46.99%), Postives = 58/83 (69.88%), Query Frame = 0


Query: 116 RVYFNLQNCLGALDGTYIKVNVLAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEG 175
           R+Y   ++C+GA+D T+I   V     P+FR RKG+I+ N+L  C+   +F+YVL+GWEG
Sbjct: 17  RLYPYFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEG 76

Query: 176 SAADSRILRDAISR-ENGLQVPK 198
           SA DS++L DA++R  N L VP+
Sbjct: 77  SAHDSKVLNDALTRNSNRLPVPE 99

[Close]

BLAST of Cmc12g0329291 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-12
Identity = 52/191 (27.23%), Postives = 86/191 (45.03%), Query Frame = 0


Query: 6   FAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIV 65
           F  LC++L+    L  T  + +EE VAMFL +  H+   R +   F R+ ETV R F  V
Sbjct: 77  FTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDVGLRFGRNQETVQRKFREV 136

Query: 66  LLAVLRLYEELIKRLVSVTSNCNDQRWKCFEVGIIETHYISPLRTSHLIERVYFNLQNCL 125
           L A   L  + I+            R + + +         P R   + +R +      +
Sbjct: 137 LTATELLACDYIR---------TPTRQELYRI---------PERL-QVDQRYWPYFSGFV 196

Query: 126 GALDGTYIKVNVLAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRD 185
           GA+DGT++ V V    +  +  R    + N++ +CD K  F Y+  G  GS  D+ +L+ 
Sbjct: 197 GAMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFTYIWNGAPGSCYDTAVLQI 248

Query: 186 AISRENGLQVP 197
           A   ++   +P
Sbjct: 257 AQQSDSEFPLP 248

[Close]

BLAST of Cmc12g0329291 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-08
Identity = 55/196 (28.06%), Postives = 75/196 (38.27%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 60
           M    F  LC +L    GL S+  + ++E VA+FL + A +   R I   F  + ET+ R
Sbjct: 30  MSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDIALRFGHAQETIWR 89

Query: 61  HFNIVLLAVLRLYEELIKRLVSVTSNCNDQRWKCFEVGIIETHYISPLRTSHLIERVYFN 120
            F+ VL A+ RL  E                            YI P +   L   +   
Sbjct: 90  KFHDVLKAMERLAVE----------------------------YIRPRKVEEL-RAISNR 149

Query: 121 LQNCLGALDGTYIKVNVLAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS 180
           LQ+     D  Y          P      G  + NVL +CD    F Y   G  GS  D+
Sbjct: 150 LQD-----DTRY---------WPFLMDLLGIASFNVLAICDLDMLFTYCFVGMAGSTHDA 182

Query: 181 RILRDAISRENGLQVP 197
           R+L  AIS +    VP
Sbjct: 210 RVLSAAISDDPLFHVP 182

The following BLAST results are available for this feature:

BLAST of Cmc12g0329291 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27061.1	2.5e-85	85.35	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056561.1	2.5e-85	85.35	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0064809.1	2.5e-85	85.35	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0031556.1	2.5e-85	85.35	retrotransposon protein [Cucumis melo var. makuwa] >KAA0033743.1 retrotransposon...	[more]
KAA0035776.1	1.6e-84	84.85	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc12g0329291 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc12g0329291 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D7X8	1.2e-85	85.35	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VH63	1.2e-85	85.35	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DTQ4	1.2e-85	85.35	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UST8	1.2e-85	85.35	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7STY2	7.9e-85	84.34	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Cmc12g0329291 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	3.1e-25	33.33	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G28950.1	1.6e-16	46.99	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G43722.1	1.8e-12	27.23	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28730.1	2.0e-08	28.06	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 128..185 e-value: 2.6E-6 score: 27.2
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 1..96
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 122..194
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 1..96
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 122..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc12g0329291.1	Cmc12g0329291.1	mRNA