Cmc12g0328441 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc12g0328441
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr12: 19601066 .. 19601842 (+)
RNA-Seq Expression	Cmc12g0328441
Synteny	Cmc12g0328441

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCGTGTTAGAGAAGTACCGTGATGTGATGCCCGATAGTTTGCCCAAGTCTTTGCCACCTCGGAGAATGATTGATCATGAGATTGAGTTGGTGTCAGGGGCAAAACCGCCTGCGAAGAATGCTTACCGTATGGTGCCTCCGGAGTTAGCTGAACTTCAGAAACAGTTAGATGAGTTACTGAATGCAGGATTCATTAGGCCTGCAAAAGCTCCGTATGGGGCCCCAGTTCTTTTCCAAAAGAAGAAAGATGGGAGTTTACGACTGTGCATTGATTATCGTGCCCTGAATAAGCTCACGGTTCGCAACAAGTATCCACTTCCCATAATTACTGACTTGTTCGATCGCTTACATGGGGCGAAGTATTTTTCAAAGTTAGACTTGCGATCGGGATACTACCAAGTGAGAATTGCAGAGGGAGATGAGCCAAAGACACCCTGTATCATTCGATATGGTGCGTTCGAATTCCTCGTAATGCCATTTGGTCTCACCAATGCCCCTGCAACCTTCTGTACGTTGATGAACCAGGTCTTCCACGAATACCTCGATAAATTCGTAGTAGTCTACCTGGATGACATAGTGGTCTATAATACGACCATGGAGGAACATAGAAACCACCTGCAAAAGGTTTTTCAGAAATTGAAGGAGAATCAACTGTATGTTAAAAGAGAAAAATGCTCTTTTGCACAAGAACATGCAACTATATACCTGTTAGCTCACCTCCGGGGGAGCGAGATTGGTGGGTCGGTTAGAGACACCTTTAGAGAGTTCCTATAG

mRNA sequence

ATGCGCGTGTTAGAGAAGTACCGTGATGTGATGCCCGATAGTTTGCCCAAGTCTTTGCCACCTCGGAGAATGATTGATCATGAGATTGAGTTGGTGTCAGGGGCAAAACCGCCTGCGAAGAATGCTTACCGTATGGTGCCTCCGGAGTTAGCTGAACTTCAGAAACAGTTAGATGAGTTACTGAATGCAGGATTCATTAGGCCTGCAAAAGCTCCGTATGGGGCCCCAGTTCTTTTCCAAAAGAAGAAAGATGGGAGTTTACGACTGTGCATTGATTATCGTGCCCTGAATAAGCTCACGGTTCGCAACAAGTATCCACTTCCCATAATTACTGACTTGTTCGATCGCTTACATGGGGCGAAGTATTTTTCAAAGTTAGACTTGCGATCGGGATACTACCAAGTGAGAATTGCAGAGGGAGATGAGCCAAAGACACCCTGTATCATTCGATATGGTGCGTTCGAATTCCTCGTAATGCCATTTGGTCTCACCAATGCCCCTGCAACCTTCTGTACGTTGATGAACCAGGTCTTCCACGAATACCTCGATAAATTCGTAGTAGTCTACCTGGATGACATAGTGGTCTATAATACGACCATGGAGGAACATAGAAACCACCTGCAAAAGGTTTTTCAGAAATTGAAGGAGAATCAACTGTATGTTAAAAGAGAAAAATGCTCTTTTGCACAAGAACATGCAACTATATACCTGTTAGCTCACCTCCGGGGGAGCGAGATTGGTGGGTCGGTTAGAGACACCTTTAGAGAGTTCCTATAG

Coding sequence (CDS)

ATGCGCGTGTTAGAGAAGTACCGTGATGTGATGCCCGATAGTTTGCCCAAGTCTTTGCCACCTCGGAGAATGATTGATCATGAGATTGAGTTGGTGTCAGGGGCAAAACCGCCTGCGAAGAATGCTTACCGTATGGTGCCTCCGGAGTTAGCTGAACTTCAGAAACAGTTAGATGAGTTACTGAATGCAGGATTCATTAGGCCTGCAAAAGCTCCGTATGGGGCCCCAGTTCTTTTCCAAAAGAAGAAAGATGGGAGTTTACGACTGTGCATTGATTATCGTGCCCTGAATAAGCTCACGGTTCGCAACAAGTATCCACTTCCCATAATTACTGACTTGTTCGATCGCTTACATGGGGCGAAGTATTTTTCAAAGTTAGACTTGCGATCGGGATACTACCAAGTGAGAATTGCAGAGGGAGATGAGCCAAAGACACCCTGTATCATTCGATATGGTGCGTTCGAATTCCTCGTAATGCCATTTGGTCTCACCAATGCCCCTGCAACCTTCTGTACGTTGATGAACCAGGTCTTCCACGAATACCTCGATAAATTCGTAGTAGTCTACCTGGATGACATAGTGGTCTATAATACGACCATGGAGGAACATAGAAACCACCTGCAAAAGGTTTTTCAGAAATTGAAGGAGAATCAACTGTATGTTAAAAGAGAAAAATGCTCTTTTGCACAAGAACATGCAACTATATACCTGTTAGCTCACCTCCGGGGGAGCGAGATTGGTGGGTCGGTTAGAGACACCTTTAGAGAGTTCCTATAG

Protein sequence

MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVSGAKPPAKNAYRMVPPELAELQKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTPCIIRYGAFEFLVMPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYNTTMEEHRNHLQKVFQKLKENQLYVKREKCSFAQEHATIYLLAHLRGSEIGGSVRDTFREFL

Homology

[Close]

BLAST of Cmc12g0328441 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 459.9 bits (1182), Expect = 1.4e-125
Identity = 225/241 (93.36%), Postives = 231/241 (95.85%), Query Frame = 0


Query: 1   MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVSGAKPPAKNAYRMVPPELAELQKQLDEL 60
           MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELV GAKPPAKNAYRM PPELAEL+KQLDEL
Sbjct: 626 MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDEL 685

Query: 61  LNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA 120
           LNAGFIRPAKAPYGAPVLFQ+KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA
Sbjct: 686 LNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA 745

Query: 121 KYFSKLDLRSGYYQVRIAEGDEPKTPCIIRYGAFEFLVMPFGLTNAPATFCTLMNQVFHE 180
           KYFSKLDLRSGYYQVRIAEGDEPKT C+ RYGAFEFLVMPFGLTNAPATFCTLMNQVFHE
Sbjct: 746 KYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFHE 805

Query: 181 YLDKFVVVYLDDIVVYNTTMEEHRNHLQKVFQKLKENQLYVKREKCSFAQEHATIYLLAH 240
           YLDKFVVVYLDDIVVY+TTMEEHR+HLQKVFQKLKENQLYVKREKCSFAQE   I  L H
Sbjct: 806 YLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQER--INFLGH 864

Query: 241 L 242
           +
Sbjct: 866 V 864

[Close]

BLAST of Cmc12g0328441 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 459.9 bits (1182), Expect = 1.4e-125
Identity = 225/241 (93.36%), Postives = 231/241 (95.85%), Query Frame = 0


Query: 1   MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVSGAKPPAKNAYRMVPPELAELQKQLDEL 60
           MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELV GAKPPAKNAYRM PPELAEL+KQLDEL
Sbjct: 630 MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDEL 689

Query: 61  LNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA 120
           LNAGFIRPAKAPYGAPVLFQ+KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA
Sbjct: 690 LNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA 749

Query: 121 KYFSKLDLRSGYYQVRIAEGDEPKTPCIIRYGAFEFLVMPFGLTNAPATFCTLMNQVFHE 180
           KYFSKLDLRSGYYQVRIAEGDEPKT C+ RYGAFEFLVMPFGLTNAPATFCTLMNQVFHE
Sbjct: 750 KYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFHE 809

Query: 181 YLDKFVVVYLDDIVVYNTTMEEHRNHLQKVFQKLKENQLYVKREKCSFAQEHATIYLLAH 240
           YLDKFVVVYLDDIVVY+TTMEEHR+HLQKVFQKLKENQLYVKREKCSFAQE   I  L H
Sbjct: 810 YLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQER--INFLGH 868

Query: 241 L 242
           +
Sbjct: 870 V 868

[Close]

BLAST of Cmc12g0328441 vs. NCBI nr
Match: KAA0063412.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 459.9 bits (1182), Expect = 1.4e-125
Identity = 225/241 (93.36%), Postives = 231/241 (95.85%), Query Frame = 0


Query: 1   MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVSGAKPPAKNAYRMVPPELAELQKQLDEL 60
           MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELV GAKPPAKNAYRM PPELAEL+KQLDEL
Sbjct: 630 MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDEL 689

Query: 61  LNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA 120
           LNAGFIRPAKAPYGAPVLFQ+KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA
Sbjct: 690 LNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA 749

Query: 121 KYFSKLDLRSGYYQVRIAEGDEPKTPCIIRYGAFEFLVMPFGLTNAPATFCTLMNQVFHE 180
           KYFSKLDLRSGYYQVRIAEGDEPKT C+ RYGAFEFLVMPFGLTNAPATFCTLMNQVFHE
Sbjct: 750 KYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFHE 809

Query: 181 YLDKFVVVYLDDIVVYNTTMEEHRNHLQKVFQKLKENQLYVKREKCSFAQEHATIYLLAH 240
           YLDKFVVVYLDDIVVY+TTMEEHR+HLQKVFQKLKENQLYVKREKCSFAQE   I  L H
Sbjct: 810 YLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQER--INFLGH 868

Query: 241 L 242
           +
Sbjct: 870 V 868

[Close]

BLAST of Cmc12g0328441 vs. NCBI nr
Match: KAA0032849.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 459.9 bits (1182), Expect = 1.4e-125
Identity = 225/241 (93.36%), Postives = 231/241 (95.85%), Query Frame = 0


Query: 1   MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVSGAKPPAKNAYRMVPPELAELQKQLDEL 60
           MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELV GAKPPAKNAYRM PPELAEL+KQLDEL
Sbjct: 630 MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDEL 689

Query: 61  LNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA 120
           LNAGFIRPAKAPYGAPVLFQ+KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA
Sbjct: 690 LNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA 749

Query: 121 KYFSKLDLRSGYYQVRIAEGDEPKTPCIIRYGAFEFLVMPFGLTNAPATFCTLMNQVFHE 180
           KYFSKLDLRSGYYQVRIAEGDEPKT C+ RYGAFEFLVMPFGLTNAPATFCTLMNQVFHE
Sbjct: 750 KYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFHE 809

Query: 181 YLDKFVVVYLDDIVVYNTTMEEHRNHLQKVFQKLKENQLYVKREKCSFAQEHATIYLLAH 240
           YLDKFVVVYLDDIVVY+TTMEEHR+HLQKVFQKLKENQLYVKREKCSFAQE   I  L H
Sbjct: 810 YLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQER--INFLGH 868

Query: 241 L 242
           +
Sbjct: 870 V 868

[Close]

BLAST of Cmc12g0328441 vs. NCBI nr
Match: TYK28713.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 459.9 bits (1182), Expect = 1.4e-125
Identity = 225/241 (93.36%), Postives = 231/241 (95.85%), Query Frame = 0


Query: 1   MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVSGAKPPAKNAYRMVPPELAELQKQLDEL 60
           MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELV GAKPPAKNAYRM PPELAEL+KQLDEL
Sbjct: 630 MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDEL 689

Query: 61  LNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA 120
           LNAGFIRPAKAPYGAPVLFQ+KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA
Sbjct: 690 LNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA 749

Query: 121 KYFSKLDLRSGYYQVRIAEGDEPKTPCIIRYGAFEFLVMPFGLTNAPATFCTLMNQVFHE 180
           KYFSKLDLRSGYYQVRIAEGDEPKT C+ RYGAFEFLVMPFGLTNAPATFCTLMNQVFHE
Sbjct: 750 KYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFHE 809

Query: 181 YLDKFVVVYLDDIVVYNTTMEEHRNHLQKVFQKLKENQLYVKREKCSFAQEHATIYLLAH 240
           YLDKFVVVYLDDIVVY+TTMEEHR+HLQKVFQKLKENQLYVKREKCSFAQE   I  L H
Sbjct: 810 YLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQER--INFLGH 868

Query: 241 L 242
           +
Sbjct: 870 V 868

[Close]

BLAST of Cmc12g0328441 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 188.7 bits (478), Expect = 8.1e-47
Identity = 95/233 (40.77%), Postives = 142/233 (60.94%), Query Frame = 0


Query: 5   EKYRDVMPDSLP------KSLPPRRMIDHEIELVSGAKPPAKNAYRMVPPELAELQKQLD 64
           +KYR+++ + LP       ++P    + H+IE+  GA+ P    Y +      E+ K + 
Sbjct: 562 QKYREIIRNDLPPRPADINNIP----VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQ 621

Query: 65  ELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLH 124
           +LL+  FI P+K+P  +PV+   KKDG+ RLC+DYR LNK T+ + +PLP I +L  R+ 
Sbjct: 622 KLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIG 681

Query: 125 GAKYFSKLDLRSGYYQVRIAEGDEPKTPCIIRYGAFEFLVMPFGLTNAPATFCTLMNQVF 184
            A+ F+ LDL SGY+Q+ +   D  KT  +   G +E+ VMPFGL NAP+TF   M   F
Sbjct: 682 NAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTF 741

Query: 185 HEYLDKFVVVYLDDIVVYNTTMEEHRNHLQKVFQKLKENQLYVKREKCSFAQE 232
            +   +FV VYLDDI++++ + EEH  HL  V ++LK   L VK++KC FA E
Sbjct: 742 RDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASE 788

[Close]

BLAST of Cmc12g0328441 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 188.7 bits (478), Expect = 8.1e-47
Identity = 95/233 (40.77%), Postives = 142/233 (60.94%), Query Frame = 0


Query: 5   EKYRDVMPDSLP------KSLPPRRMIDHEIELVSGAKPPAKNAYRMVPPELAELQKQLD 64
           +KYR+++ + LP       ++P    + H+IE+  GA+ P    Y +      E+ K + 
Sbjct: 588 QKYREIIRNDLPPRPADINNIP----VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQ 647

Query: 65  ELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLH 124
           +LL+  FI P+K+P  +PV+   KKDG+ RLC+DYR LNK T+ + +PLP I +L  R+ 
Sbjct: 648 KLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIG 707

Query: 125 GAKYFSKLDLRSGYYQVRIAEGDEPKTPCIIRYGAFEFLVMPFGLTNAPATFCTLMNQVF 184
            A+ F+ LDL SGY+Q+ +   D  KT  +   G +E+ VMPFGL NAP+TF   M   F
Sbjct: 708 NAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTF 767

Query: 185 HEYLDKFVVVYLDDIVVYNTTMEEHRNHLQKVFQKLKENQLYVKREKCSFAQE 232
            +   +FV VYLDDI++++ + EEH  HL  V ++LK   L VK++KC FA E
Sbjct: 768 RDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASE 814

[Close]

BLAST of Cmc12g0328441 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.4e-46
Identity = 88/128 (68.75%), Postives = 106/128 (82.81%), Query Frame = 0


Query: 86  SLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKT 145
           SLR+CIDYRAL K+T++NKYP+P + DLFDRL  A +F+KLDLRSGY+QVRIA+GDEPKT
Sbjct: 5   SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64

Query: 146 PCIIRYGAFEFLVMPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVV---YNTTMEE 205
            C+ RYG+FEF VMPFGLTNA ATFC LMN V +EYLD FVVVYLDD+VV   Y+ ++ E
Sbjct: 65  TCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHE 124

Query: 206 HRNHLQKV 211
           H  HL+ V
Sbjct: 125 HIKHLRVV 132

[Close]

BLAST of Cmc12g0328441 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 8.6e-41
Identity = 83/230 (36.09%), Postives = 141/230 (61.30%), Query Frame = 0


Query: 3   VLEKYRDVMPDSLPKSLP-PRRMIDHEIELV-SGAKPPAKNAYRMVPPELAELQKQLDEL 62
           + ++++D+  ++  + LP P + ++ E+EL     + P +N Y + P ++  +  ++++ 
Sbjct: 377 IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDEINQG 436

Query: 63  LNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA 122
           L +G IR +KA    PV+F  KK+G+LR+ +DY+ LNK    N YPLP+I  L  ++ G+
Sbjct: 437 LKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGS 496

Query: 123 KYFSKLDLRSGYYQVRIAEGDEPKTPCIIRYGAFEFLVMPFGLTNAPATFCTLMNQVFHE 182
             F+KLDL+S Y+ +R+ +GDE K       G FE+LVMP+G++ APA F   +N +  E
Sbjct: 497 TIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGE 556

Query: 183 YLDKFVVVYLDDIVVYNTTMEEHRNHLQKVFQKLKENQLYVKREKCSFAQ 231
             +  VV Y+DDI++++ +  EH  H++ V QKLK   L + + KC F Q
Sbjct: 557 AKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQ 605

[Close]

BLAST of Cmc12g0328441 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 8.6e-41
Identity = 83/230 (36.09%), Postives = 141/230 (61.30%), Query Frame = 0


Query: 3   VLEKYRDVMPDSLPKSLP-PRRMIDHEIELV-SGAKPPAKNAYRMVPPELAELQKQLDEL 62
           + ++++D+  ++  + LP P + ++ E+EL     + P +N Y + P ++  +  ++++ 
Sbjct: 377 IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDEINQG 436

Query: 63  LNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA 122
           L +G IR +KA    PV+F  KK+G+LR+ +DY+ LNK    N YPLP+I  L  ++ G+
Sbjct: 437 LKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGS 496

Query: 123 KYFSKLDLRSGYYQVRIAEGDEPKTPCIIRYGAFEFLVMPFGLTNAPATFCTLMNQVFHE 182
             F+KLDL+S Y+ +R+ +GDE K       G FE+LVMP+G++ APA F   +N +  E
Sbjct: 497 TIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGE 556

Query: 183 YLDKFVVVYLDDIVVYNTTMEEHRNHLQKVFQKLKENQLYVKREKCSFAQ 231
             +  VV Y+DDI++++ +  EH  H++ V QKLK   L + + KC F Q
Sbjct: 557 AKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQ 605

[Close]

BLAST of Cmc12g0328441 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 6.9e-126
Identity = 225/241 (93.36%), Postives = 231/241 (95.85%), Query Frame = 0


Query: 1   MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVSGAKPPAKNAYRMVPPELAELQKQLDEL 60
           MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELV GAKPPAKNAYRM PPELAEL+KQLDEL
Sbjct: 630 MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDEL 689

Query: 61  LNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA 120
           LNAGFIRPAKAPYGAPVLFQ+KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA
Sbjct: 690 LNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA 749

Query: 121 KYFSKLDLRSGYYQVRIAEGDEPKTPCIIRYGAFEFLVMPFGLTNAPATFCTLMNQVFHE 180
           KYFSKLDLRSGYYQVRIAEGDEPKT C+ RYGAFEFLVMPFGLTNAPATFCTLMNQVFHE
Sbjct: 750 KYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFHE 809

Query: 181 YLDKFVVVYLDDIVVYNTTMEEHRNHLQKVFQKLKENQLYVKREKCSFAQEHATIYLLAH 240
           YLDKFVVVYLDDIVVY+TTMEEHR+HLQKVFQKLKENQLYVKREKCSFAQE   I  L H
Sbjct: 810 YLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQER--INFLGH 868

Query: 241 L 242
           +
Sbjct: 870 V 868

[Close]

BLAST of Cmc12g0328441 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 6.9e-126
Identity = 225/241 (93.36%), Postives = 231/241 (95.85%), Query Frame = 0


Query: 1   MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVSGAKPPAKNAYRMVPPELAELQKQLDEL 60
           MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELV GAKPPAKNAYRM PPELAEL+KQLDEL
Sbjct: 630 MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDEL 689

Query: 61  LNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA 120
           LNAGFIRPAKAPYGAPVLFQ+KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA
Sbjct: 690 LNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA 749

Query: 121 KYFSKLDLRSGYYQVRIAEGDEPKTPCIIRYGAFEFLVMPFGLTNAPATFCTLMNQVFHE 180
           KYFSKLDLRSGYYQVRIAEGDEPKT C+ RYGAFEFLVMPFGLTNAPATFCTLMNQVFHE
Sbjct: 750 KYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFHE 809

Query: 181 YLDKFVVVYLDDIVVYNTTMEEHRNHLQKVFQKLKENQLYVKREKCSFAQEHATIYLLAH 240
           YLDKFVVVYLDDIVVY+TTMEEHR+HLQKVFQKLKENQLYVKREKCSFAQE   I  L H
Sbjct: 810 YLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQER--INFLGH 868

Query: 241 L 242
           +
Sbjct: 870 V 868

[Close]

BLAST of Cmc12g0328441 vs. ExPASy TrEMBL
Match: A0A5A7UXR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005550 PE=4 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 6.9e-126
Identity = 225/241 (93.36%), Postives = 231/241 (95.85%), Query Frame = 0


Query: 1   MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVSGAKPPAKNAYRMVPPELAELQKQLDEL 60
           MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELV GAKPPAKNAYRM PPELAEL+KQLDEL
Sbjct: 630 MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDEL 689

Query: 61  LNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA 120
           LNAGFIRPAKAPYGAPVLFQ+KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA
Sbjct: 690 LNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA 749

Query: 121 KYFSKLDLRSGYYQVRIAEGDEPKTPCIIRYGAFEFLVMPFGLTNAPATFCTLMNQVFHE 180
           KYFSKLDLRSGYYQVRIAEGDEPKT C+ RYGAFEFLVMPFGLTNAPATFCTLMNQVFHE
Sbjct: 750 KYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFHE 809

Query: 181 YLDKFVVVYLDDIVVYNTTMEEHRNHLQKVFQKLKENQLYVKREKCSFAQEHATIYLLAH 240
           YLDKFVVVYLDDIVVY+TTMEEHR+HLQKVFQKLKENQLYVKREKCSFAQE   I  L H
Sbjct: 810 YLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQER--INFLGH 868

Query: 241 L 242
           +
Sbjct: 870 V 868

[Close]

BLAST of Cmc12g0328441 vs. ExPASy TrEMBL
Match: A0A5A7T0E2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001310 PE=4 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 6.9e-126
Identity = 225/241 (93.36%), Postives = 231/241 (95.85%), Query Frame = 0


Query: 1   MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVSGAKPPAKNAYRMVPPELAELQKQLDEL 60
           MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELV GAKPPAKNAYRM PPELAEL+KQLDEL
Sbjct: 630 MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDEL 689

Query: 61  LNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA 120
           LNAGFIRPAKAPYGAPVLFQ+KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA
Sbjct: 690 LNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA 749

Query: 121 KYFSKLDLRSGYYQVRIAEGDEPKTPCIIRYGAFEFLVMPFGLTNAPATFCTLMNQVFHE 180
           KYFSKLDLRSGYYQVRIAEGDEPKT C+ RYGAFEFLVMPFGLTNAPATFCTLMNQVFHE
Sbjct: 750 KYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFHE 809

Query: 181 YLDKFVVVYLDDIVVYNTTMEEHRNHLQKVFQKLKENQLYVKREKCSFAQEHATIYLLAH 240
           YLDKFVVVYLDDIVVY+TTMEEHR+HLQKVFQKLKENQLYVKREKCSFAQE   I  L H
Sbjct: 810 YLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQER--INFLGH 868

Query: 241 L 242
           +
Sbjct: 870 V 868

[Close]

BLAST of Cmc12g0328441 vs. ExPASy TrEMBL
Match: A0A5D3B7E7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00360 PE=4 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 6.9e-126
Identity = 225/241 (93.36%), Postives = 231/241 (95.85%), Query Frame = 0


Query: 1   MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVSGAKPPAKNAYRMVPPELAELQKQLDEL 60
           MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELV GAKPPAKNAYRM PPELAEL+KQLDEL
Sbjct: 630 MRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDEL 689

Query: 61  LNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA 120
           LNAGFIRPAKAPYGAPVLFQ+KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA
Sbjct: 690 LNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGA 749

Query: 121 KYFSKLDLRSGYYQVRIAEGDEPKTPCIIRYGAFEFLVMPFGLTNAPATFCTLMNQVFHE 180
           KYFSKLDLRSGYYQVRIAEGDEPKT C+ RYGAFEFLVMPFGLTNAPATFCTLMNQVFHE
Sbjct: 750 KYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFHE 809

Query: 181 YLDKFVVVYLDDIVVYNTTMEEHRNHLQKVFQKLKENQLYVKREKCSFAQEHATIYLLAH 240
           YLDKFVVVYLDDIVVY+TTMEEHR+HLQKVFQKLKENQLYVKREKCSFAQE   I  L H
Sbjct: 810 YLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQER--INFLGH 868

Query: 241 L 242
           +
Sbjct: 870 V 868

The following BLAST results are available for this feature:

BLAST of Cmc12g0328441 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067557.1	1.4e-125	93.36	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0037220.1	1.4e-125	93.36	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]
KAA0063412.1	1.4e-125	93.36	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0032849.1	1.4e-125	93.36	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK28713.1	1.4e-125	93.36	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc12g0328441 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	8.1e-47	40.77	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	8.1e-47	40.77	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P31843	1.4e-46	68.75	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
P0CT41	8.6e-41	36.09	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	8.6e-41	36.09	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc12g0328441 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C4R1	6.9e-126	93.36	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3BRZ6	6.9e-126	93.36	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UXR6	6.9e-126	93.36	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22...	[more]
A0A5A7T0E2	6.9e-126	93.36	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]
A0A5D3B7E7	6.9e-126	93.36	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]

BLAST of Cmc12g0328441 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 25..165 e-value: 8.9E-84 score: 282.0
None	No IPR available	PANTHER	PTHR15503:SF11	RETROTRANSPOSON GAG-LIKE PROTEIN 6	coord: 15..222
None	No IPR available	CDD	cd01647	RT_LTR	coord: 64..230 e-value: 1.94136E-85 score: 250.59
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 81..229 e-value: 3.1E-28 score: 98.8
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 61..241 score: 11.663481
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 105..233 e-value: 8.9E-84 score: 282.0
IPR032567	LDOC1-related	PANTHER	PTHR15503	LDOC1 RELATED	coord: 15..222
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 3..231

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc12g0328441.1	Cmc12g0328441.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding