Cmc12g0327061 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc12g0327061
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrotransposon protein
Location	CMiso1.1chr12: 17849175 .. 17849693 (-)
RNA-Seq Expression	Cmc12g0327061
Synteny	Cmc12g0327061

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGGCAGACATTCGCAATTCTATGCCATTTACTTAGAAAGGTGGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCGCGTCATCCAACGGGAATTTGTACGGTCCGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCCGGTAACAAGTAACTGCAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATCATAGAAGTTGACTATAATTCACCTTTACGTACATCGCACTTAATTCAACGTGTTTGTTTCAACCTGCAGAACTGCCTTGGCGCGTTAGACGGGACGTATATAAAGGTCAACGTCCCCGCAGGAGATCGGCCTACATTCAGAACGCGTAAAGGAGAAATTGCCACAAACGTTCTGGGGGTCTGTGACACGAAAGGAGATTTCGTTTATGTCCTCGCCGGTTAG

mRNA sequence

ATGGATAGGCAGACATTCGCAATTCTATGCCATTTACTTAGAAAGGTGGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCGCGTCATCCAACGGGAATTTGTACGGTCCGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCCGGTAACAAGTAACTGCAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATCATAGAAGTTGACTATAATTCACCTTTACGTACATCGCACTTAATTCAACGTGTTTGTTTCAACCTGCAGAACTGCCTTGGCGCGTTAGACGGGACGTATATAAAGGTCAACGTCCCCGCAGGAGATCGGCCTACATTCAGAACGCGTAAAGGAGAAATTGCCACAAACGTTCTGGGGGTCTGTGACACGAAAGGAGATTTCGTTTATGTCCTCGCCGGTTAG

Coding sequence (CDS)

ATGGATAGGCAGACATTCGCAATTCTATGCCATTTACTTAGAAAGGTGGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCGCGTCATCCAACGGGAATTTGTACGGTCCGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCCGGTAACAAGTAACTGCAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATCATAGAAGTTGACTATAATTCACCTTTACGTACATCGCACTTAATTCAACGTGTTTGTTTCAACCTGCAGAACTGCCTTGGCGCGTTAGACGGGACGTATATAAAGGTCAACGTCCCCGCAGGAGATCGGCCTACATTCAGAACGCGTAAAGGAGAAATTGCCACAAACGTTCTGGGGGTCTGTGACACGAAAGGAGATTTCGTTTATGTCCTCGCCGGTTAG

Protein sequence

MDRQTFAILCHLLRKVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFNLQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG

Homology

[Close]

BLAST of Cmc12g0327061 vs. NCBI nr
Match: KAA0043338.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 285.4 bits (729), Expect = 3.2e-73
Identity = 146/172 (84.88%), Postives = 146/172 (84.88%), Query Frame = 0


Query: 1   MDRQTFAILCHLLRKVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 60
           MDRQTFAILCHLLRKVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR
Sbjct: 40  MDRQTFAILCHLLRKVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFN 120
           HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE                        
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE------------------------ 159

Query: 121 LQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 173
             NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG
Sbjct: 160 --NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 185

[Close]

BLAST of Cmc12g0327061 vs. NCBI nr
Match: TYK27061.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 282.0 bits (720), Expect = 3.6e-72
Identity = 144/172 (83.72%), Postives = 145/172 (84.30%), Query Frame = 0


Query: 1   MDRQTFAILCHLLRKVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 60
           MDR+TFAILCHLLR VAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFN 120
           HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE                        
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE------------------------ 159

Query: 121 LQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 173
             NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG
Sbjct: 160 --NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 185

[Close]

BLAST of Cmc12g0327061 vs. NCBI nr
Match: KAA0043157.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 282.0 bits (720), Expect = 3.6e-72
Identity = 144/172 (83.72%), Postives = 145/172 (84.30%), Query Frame = 0


Query: 1   MDRQTFAILCHLLRKVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 60
           MDR+TFAILCHLLR VAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFN 120
           HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE                        
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE------------------------ 159

Query: 121 LQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 173
             NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG
Sbjct: 160 --NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 185

[Close]

BLAST of Cmc12g0327061 vs. NCBI nr
Match: KAA0056561.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 282.0 bits (720), Expect = 3.6e-72
Identity = 144/172 (83.72%), Postives = 145/172 (84.30%), Query Frame = 0


Query: 1   MDRQTFAILCHLLRKVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 60
           MDR+TFAILCHLLR VAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFN 120
           HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE                        
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE------------------------ 159

Query: 121 LQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 173
             NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG
Sbjct: 160 --NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 185

[Close]

BLAST of Cmc12g0327061 vs. NCBI nr
Match: KAA0064809.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 282.0 bits (720), Expect = 3.6e-72
Identity = 144/172 (83.72%), Postives = 145/172 (84.30%), Query Frame = 0


Query: 1   MDRQTFAILCHLLRKVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 60
           MDR+TFAILCHLLR VAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFN 120
           HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE                        
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE------------------------ 159

Query: 121 LQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 173
             NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG
Sbjct: 160 --NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 185

[Close]

BLAST of Cmc12g0327061 vs. ExPASy TrEMBL
Match: A0A5A7TKK3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002520 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.6e-73
Identity = 146/172 (84.88%), Postives = 146/172 (84.88%), Query Frame = 0


Query: 1   MDRQTFAILCHLLRKVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 60
           MDRQTFAILCHLLRKVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR
Sbjct: 40  MDRQTFAILCHLLRKVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFN 120
           HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE                        
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE------------------------ 159

Query: 121 LQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 173
             NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG
Sbjct: 160 --NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 185

[Close]

BLAST of Cmc12g0327061 vs. ExPASy TrEMBL
Match: A0A5D3D7X8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001080 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.7e-72
Identity = 144/172 (83.72%), Postives = 145/172 (84.30%), Query Frame = 0


Query: 1   MDRQTFAILCHLLRKVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 60
           MDR+TFAILCHLLR VAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFN 120
           HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE                        
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE------------------------ 159

Query: 121 LQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 173
             NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG
Sbjct: 160 --NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 185

[Close]

BLAST of Cmc12g0327061 vs. ExPASy TrEMBL
Match: A0A5A7TMY2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00200 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.7e-72
Identity = 144/172 (83.72%), Postives = 145/172 (84.30%), Query Frame = 0


Query: 1   MDRQTFAILCHLLRKVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 60
           MDR+TFAILCHLLR VAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFN 120
           HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE                        
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE------------------------ 159

Query: 121 LQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 173
             NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG
Sbjct: 160 --NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 185

[Close]

BLAST of Cmc12g0327061 vs. ExPASy TrEMBL
Match: A0A5A7VH63 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001170 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.7e-72
Identity = 144/172 (83.72%), Postives = 145/172 (84.30%), Query Frame = 0


Query: 1   MDRQTFAILCHLLRKVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 60
           MDR+TFAILCHLLR VAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFN 120
           HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE                        
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE------------------------ 159

Query: 121 LQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 173
             NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG
Sbjct: 160 --NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 185

[Close]

BLAST of Cmc12g0327061 vs. ExPASy TrEMBL
Match: A0A5D3DTQ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00550 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.7e-72
Identity = 144/172 (83.72%), Postives = 145/172 (84.30%), Query Frame = 0


Query: 1   MDRQTFAILCHLLRKVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 60
           MDR+TFAILCHLLR VAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFN 120
           HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE                        
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE------------------------ 159

Query: 121 LQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 173
             NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG
Sbjct: 160 --NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 185

[Close]

BLAST of Cmc12g0327061 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-15
Identity = 52/172 (30.23%), Postives = 77/172 (44.77%), Query Frame = 0


Query: 1   MDRQTFAILCHLLRKVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 60
           MD+  F  LC LL+    L  T  + +E  +A+FL ++ H+++ R +Q  F  SGET+SR
Sbjct: 48  MDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISR 107

Query: 61  HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFN 120
           HFN VL AV+                             I  D+  P   S  ++     
Sbjct: 108 HFNNVLNAVI----------------------------AISKDFFQPNSNSDTLENDDPY 167

Query: 121 LQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 173
            ++C+G +D  +I V V   ++  FR   G +  NVL        F YVLAG
Sbjct: 168 FKDCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAG 191

[Close]

BLAST of Cmc12g0327061 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 2.9e-11
Identity = 49/172 (28.49%), Postives = 73/172 (42.44%), Query Frame = 0


Query: 1   MDRQTFAILCHLLRKVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 60
           M    F  LC++L+    L  T  + +EE VAMFL +  H+   R +   F R+ ETV R
Sbjct: 72  MSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDVGLRFGRNQETVQR 131

Query: 61  HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVCFN 120
            F  VL A   L  + I+ P                    +  Y  P R   + QR    
Sbjct: 132 KFREVLTATELLACDYIRTPTR------------------QELYRIPERL-QVDQRYWPY 191

Query: 121 LQNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 173
               +GA+DGT++ V V    +  +  R    + N++ +CD K  F Y+  G
Sbjct: 192 FSGFVGAMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFTYIWNG 224

[Close]

BLAST of Cmc12g0327061 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 2.5e-07
Identity = 22/51 (43.14%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 122 QNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 173
           ++C+GA+D T+I   V     P+FR RKG+I+ N+L  C+   +F+YVL+G
Sbjct: 23  KDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSG 73

[Close]

BLAST of Cmc12g0327061 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 5.2e-05
Identity = 28/78 (35.90%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 1   MDRQTFAILCHLLRKVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 60
           M  + F  LC +L    GL S+  + ++E VA+FL + A +   R I   F  + ET+ R
Sbjct: 30  MSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDIALRFGHAQETIWR 89

Query: 61  HFNIVLLAVLRLYEELIK 79
            F+ VL A+ RL  E I+
Sbjct: 90  KFHDVLKAMERLAVEYIR 107

The following BLAST results are available for this feature:

BLAST of Cmc12g0327061 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043338.1	3.2e-73	84.88	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK27061.1	3.6e-72	83.72	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0043157.1	3.6e-72	83.72	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056561.1	3.6e-72	83.72	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0064809.1	3.6e-72	83.72	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc12g0327061 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc12g0327061 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TKK3	1.6e-73	84.88	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D7X8	1.7e-72	83.72	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TMY2	1.7e-72	83.72	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VH63	1.7e-72	83.72	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DTQ4	1.7e-72	83.72	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Cmc12g0327061 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	1.5e-15	30.23	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	2.9e-11	28.49	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28950.1	2.5e-07	43.14	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28730.1	5.2e-05	35.90	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 122..168
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 1..96
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 122..168
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc12g0327061.1	Cmc12g0327061.1	mRNA