Cmc12g0326781 (gene) Melon (Charmono) v1.1

Overview
NameCmc12g0326781
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCMiso1.1chr12: 17510963 .. 17512814 (+)
RNA-Seq ExpressionCmc12g0326781
SyntenyCmc12g0326781
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCCTTTCATCAATAATAATAAAACAAGAGAGAGACTATATTTACCTTTACCTTAGTGTGTAAAATGGTATTAGAAGTTAATCCCTACCCACTTTGAAAAACCTAATTTCCTTTCTTGAAACTCCACCAGAAACTTCCTCTCCCTCTCAACCGAACAACTCTAATGTGATCTCGTTGAGTTCATCTTCAGCTTTGGCACCAACCTCCCCTAACATCCCCAACGTGATCCCGTCGAGTTCATCTTCAGCTTCGGCACCAATCCCTCCCCTTTAAATTCGATATTTCTTGACCAATATACCAATCCCTATTTCATTCACCCTTCCGACGGTACCAATCTTGTACTCTTCACTAACCCACTCATAGAATCAAATTATAGAACATGAAATCGAGCTATGATTCTTGCACTTATTGTAAAGAACAAAATCAAATTCGTCAATGGAGACCTCCTACGACCAATCGAAGAAATGCTCATCTCTTGGATCATTTGCAATGGTGTTGTTACGACTTAGATCCTCAACTCCCTATCCCAAGAAATTTTTGCTACTATCAATTTCTTTGACTTTGCACGTGAATTTGGCTAGACCTTCCGAAAAGATACCAGTAAAAGAATCGCTCAAGATTCTTCCAAATTCGTCGTGAACTCTCAAACCTATCACAAAATCAAGATTATGTATCAATCTACTTTGCAAAAATGAAGACTCTGTAGAATGAATTAGTCTCTTGCCACCCAACCAGCACCTATCGAAAATGTACCTGTGGTGGAACAAAAGATTTGGCCAACTACTTTCAAACGGAGCATGTTATGACATTATTAATGGAGCTTGATGAATCTTTAGCACAAATTCGGATCCAACTATTACTTATGGAACCAGAACCAACCATAAACCGTGCTTTTTCCTAGTTGTTCAAAAAATGGATCAACGAACAACCTCAAATAACCCACGCACCCCCAACAATCTTTCCATTTTTGCTGCTACACTATTAGTAAAGAACACACCAAACTCAAACAACCCACCTAAAAACCACTCCAAAAAGAAAGAAAGACCAGACACACTGTGGACTGCTGCTACAAAATTCATGGGTATCCTCCTGGTTTTCGTTTGACGAAAAACTCCACAACAGATCCACAAAAAACAGAGTCTTCCACTTACTCCTTTTTCATCATTGACAAATGAACAATACCAAGGTTTATTGAACATACTGTAGGCTCACCTTAATAAGGCCAAATCTGAACCAACGTCATCCACCAAAACCACCAATGATCATGTAACAGGTACTACTTTCTCCCTATCTTTCTCATCCAAACATGTGGATAGTTCACTTAGGAGCAACAACACATATTTGTTATTCCAGAGAATATTTTACTTCACTCAAGTCCACCCCCAACGCCACTGTCTCTTTACCAAACCAAACAAACATCTGCACTGTGCAAGTGAATGATAACCTAATTTTCCATGATGTGTTATTTATCCCATCCTTCCACTTCAACTTGATTTCATTAAGTTCCCTCATAATACAAATGCCCATCATGATAAAATTTGTTGATAACTCTTGTGTCCTCCAGGACAAGTCTTTTGTGAAGATGATTAGCAAAGCTAGCAAATGGAATGACCTATAACTGATAGATTCAAATAGCAAAACTTTCATGCCTCGCCTTGCGATGCGTCTTGAGTCTCGCGTTCCGATACGTGAACACGACCTGAGCAGACACCTCTAAGCGAAACATTAGAACACTCAATTTAATGCTTAAACCTTAAACTTAATGCTTAGTTTGAACTTGGACGCTTTGAACTACTAAGCAATAAGAAAACACAACGCAAAATAAATAACAAACTCTTGTATTAACTTAACA

mRNA sequence

TCCCTTTCATCAATAATAATAAAACAAGAGAGAGACTATATTTACCTTTACCTTAGTGTGTAAAATGGTATTAGAAGTTAATCCCTACCCACTTTGAAAAACCTAATTTCCTTTCTTGAAACTCCACCAGAAACTTCCTCTCCCTCTCAACCGAACAACTCTAATGTGATCTCGTTGAGTTCATCTTCAGCTTTGGCACCAACCTCCCCTAACATCCCCAACGTGATCCCGTCGAGTTCATCTTCAGCTTCGGCACCAATCCCTCCCCTTTAAATTCGATATTTCTTGACCAATATACCAATCCCTATTTCATTCACCCTTCCGACGGTACCAATCTTGTACTCTTCACTAACCCACTCATAGAATCAAATTATAGAACATGAAATCGAGCTATGATTCTTGCACTTATTGTAAAGAACAAAATCAAATTCGTCAATGGAGACCTCCTACGACCAATCGAAGAAATGCTCATCTCTTGGATCATTTGCAATGGTGTTGTTACGACTTAGATCCTCAACTCCCTATCCCAAGAAATTTTTGCTACTATCAATTTCTTTGACTTTGCACGTGAATTTGGCTAGACCTTCCGAAAAGATACCAGTAAAAGAATCGCTCAAGATTCTTCCAAATTCGTCGTGAACTCTCAAACCTATCACAAAATCAAGATTATGTATCAATCTACTTTGCAAAAATGAAGACTCTGTAGAATGAATTAGTCTCTTGCCACCCAACCAGCACCTATCGAAAATGTACCTGTGGTGGAACAAAAGATTTGGCCAACTACTTTCAAACGGAGCATGTTATGACATTATTAATGGAGCTTGATGAATCTTTAGCACAAATTCGGATCCAACTATTACTTATGGAACCAGAACCAACCATAAACCGTGCTTTTTCCTAGTTGTTCAAAAAATGGATCAACGAACAACCTCAAATAACCCACGCACCCCCAACAATCTTTCCATTTTTGCTGCTACACTATTAGTAAAGAACACACCAAACTCAAACAACCCACCTAAAAACCACTCCAAAAAGAAAGAAAGACCAGACACACTGTGGACTGCTGCTACAAAATTCATGGGTATCCTCCTGGTTTTCGTTTGACGAAAAACTCCACAACAGATCCACAAAAAACAGAGTCTTCCACTTACTCCTTTTTCATCATTGACAAATGAACAATACCAAGGTTTATTGAACATACTGTAGGCTCACCTTAATAAGGCCAAATCTGAACCAACGTCATCCACCAAAACCACCAATGATCATGTAACAGGTACTACTTTCTCCCTATCTTTCTCATCCAAACATGTGGATAGTTCACTTAGGAGCAACAACACATATTTGTTATTCCAGAGAATATTTTACTTCACTCAAGTCCACCCCCAACGCCACTGTCTCTTTACCAAACCAAACAAACATCTGCACTGTGCAAGTGAATGATAACCTAATTTTCCATGATGTGTTATTTATCCCATCCTTCCACTTCAACTTGATTTCATTAAGTTCCCTCATAATACAAATGCCCATCATGATAAAATTTGTTGATAACTCTTGTGTCCTCCAGGACAAGTCTTTTGTGAAGATGATTAGCAAAGCTAGCAAATGGAATGACCTATAACTGATAGATTCAAATAGCAAAACTTTCATGCCTCGCCTTGCGATGCGTCTTGAGTCTCGCGTTCCGATACGTGAACACGACCTGAGCAGACACCTCTAAGCGAAACATTAGAACACTCAATTTAATGCTTAAACCTTAAACTTAATGCTTAGTTTGAACTTGGACGCTTTGAACTACTAAGCAATAAGAAAACACAACGCAAAATAAATAACAAACTCTTGTATTAACTTAACA

Coding sequence (CDS)

ATGTGGATAGTTCACTTAGGAGCAACAACACATATTTGTTATTCCAGAGAATATTTTACTTCACTCAAGTCCACCCCCAACGCCACTGTCTCTTTACCAAACCAAACAAACATCTGCACTGTGCAAGTGAATGATAACCTAATTTTCCATGATGTGTTATTTATCCCATCCTTCCACTTCAACTTGATTTCATTAAGTTCCCTCATAATACAAATGCCCATCATGATAAAATTTGTTGATAACTCTTGTGTCCTCCAGGACAAGTCTTTTGTGAAGATGATTAGCAAAGCTAGCAAATGGAATGACCTATAA

Protein sequence

MWIVHLGATTHICYSREYFTSLKSTPNATVSLPNQTNICTVQVNDNLIFHDVLFIPSFHFNLISLSSLIIQMPIMIKFVDNSCVLQDKSFVKMISKASKWNDL
Homology
BLAST of Cmc12g0326781 vs. NCBI nr
Match: XP_031280999.1 (uncharacterized protein LOC116139474 [Pistacia vera])

HSP 1 Score: 82.0 bits (201), Expect = 3.2e-12
Identity = 46/107 (42.99%), Postives = 64/107 (59.81%), Query Frame = 0

Query: 2   WIVHLGATTHICYSREYFTSLKSTPNATVSLPNQTNICT-----VQVNDNLIFHDVLFIP 61
           WIV  GAT HIC     F SL S  + TV+LPN + I       V+++ +L+  DVLF+P
Sbjct: 45  WIVDSGATRHICSQASAFVSLHSIHHTTVTLPNHSQILVHFASDVKLHSDLVLKDVLFVP 104

Query: 62  SFHFNLISLSSLIIQMPIMIKFVDNSCVLQDKSFVKMISKASKWNDL 104
            F FNLIS+S+L+I   + + F+ N  V+QD S  +MI +  K  DL
Sbjct: 105 QFKFNLISVSALVIGSALTVSFLPNCFVIQDLSTKRMIGRGDKVQDL 151

BLAST of Cmc12g0326781 vs. NCBI nr
Match: XP_022856063.1 (uncharacterized protein LOC111377235, partial [Olea europaea var. sylvestris])

HSP 1 Score: 81.6 bits (200), Expect = 4.2e-12
Identity = 44/103 (42.72%), Postives = 65/103 (63.11%), Query Frame = 0

Query: 2   WIVHLGATTHICYSREYFTSLKSTPNATVSLPNQTNICT-----VQVNDNLIFHDVLFIP 61
           W++  GAT+HIC+S+  F S+K   NA V+LPN   I       V+ ++NL+  DVL++P
Sbjct: 339 WVMDSGATSHICFSKSAFYSMKLIENAYVTLPNHKRIPVSFVGIVKFSNNLMLEDVLYVP 398

Query: 62  SFHFNLISLSSLIIQMPIMIKFVDNSCVLQDKSFVKMISKASK 100
           +F FNL+S+SSLI    I+++F  N C +QD    KMI K  +
Sbjct: 399 NFKFNLMSVSSLIKDSNIIVRFFANECDIQDTHNQKMIGKGRR 441

BLAST of Cmc12g0326781 vs. NCBI nr
Match: GAU27958.1 (hypothetical protein TSUD_146760 [Trifolium subterraneum])

HSP 1 Score: 78.2 bits (191), Expect = 4.7e-11
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 0

Query: 2   WIVHLGATTHICYSREYFTSLKSTPNATVSLPNQTNICT-----VQVNDNLIFHDVLFIP 61
           WI+  GAT H+C S  +FT+ +S P   V LPN   + T     +QV   LI H VL++P
Sbjct: 382 WILDSGATDHVCNSLSFFTNHRSIPPLLVKLPNGNLVSTEIVGDIQVTSTLILHGVLYMP 441

Query: 62  SFHFNLISLSSLIIQMPIMIKFVDNSCVLQDK 89
           +FH+NLISLS +++ +   I F D+ C++Q K
Sbjct: 442 NFHYNLISLSKIVLDLDCRIVFTDDLCLIQTK 473

BLAST of Cmc12g0326781 vs. NCBI nr
Match: XP_022547699.1 (uncharacterized protein LOC106426940 [Brassica napus])

HSP 1 Score: 78.2 bits (191), Expect = 4.7e-11
Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 0

Query: 2   WIVHLGATTHICYSREYFTSLKSTPNATVSLPNQ-----TNICTVQVNDNLIFHDVLFIP 61
           WI+  GA++H+C     F S     + TV+LPN      T+   ++++D+LI +DVL +P
Sbjct: 461 WIIDSGASSHVCSDLGMFDSYVPVDSVTVTLPNGVRVPITHTGVIKISDHLILYDVLLVP 520

Query: 62  SFHFNLISLSSLIIQMPIMIKFVDNSCVLQDKSFVKMISKASKWNDL 104
            FHFNLIS+SSLI  +     F  N C++Q+ S   MI K S +N+L
Sbjct: 521 DFHFNLISVSSLIKTLSCAAHFFPNGCLIQELSRGLMIGKGSLYNNL 567

BLAST of Cmc12g0326781 vs. NCBI nr
Match: KAG7578768.1 (GAG-pre-integrase domain [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 77.8 bits (190), Expect = 6.1e-11
Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 0

Query: 2   WIVHLGATTHICYSREYFTSLKSTPNATVSLPNQTNIC-----TVQVNDNLIFHDVLFIP 61
           WI+  GATTH+C +   F  + S    TV LPN T I      TV+++D L+  +VLFIP
Sbjct: 444 WIIDSGATTHVCCNLSLFDDINSISETTVKLPNSTQIAINQSGTVKLSDKLLLRNVLFIP 503

Query: 62  SFHFNLISLSSLIIQMPIMIKFVDNSCVLQDKSFVKMISKASKWNDL 104
           SFH NLIS+SSL+      + F  + C +Q+ +   MI K    N L
Sbjct: 504 SFHMNLISVSSLLQDCAYSVNFFPSFCTIQEFTRGLMIGKGRLENKL 550

BLAST of Cmc12g0326781 vs. ExPASy TrEMBL
Match: A0A2Z6M8V9 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_146760 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.3e-11
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 0

Query: 2   WIVHLGATTHICYSREYFTSLKSTPNATVSLPNQTNICT-----VQVNDNLIFHDVLFIP 61
           WI+  GAT H+C S  +FT+ +S P   V LPN   + T     +QV   LI H VL++P
Sbjct: 382 WILDSGATDHVCNSLSFFTNHRSIPPLLVKLPNGNLVSTEIVGDIQVTSTLILHGVLYMP 441

Query: 62  SFHFNLISLSSLIIQMPIMIKFVDNSCVLQDK 89
           +FH+NLISLS +++ +   I F D+ C++Q K
Sbjct: 442 NFHYNLISLSKIVLDLDCRIVFTDDLCLIQTK 473

BLAST of Cmc12g0326781 vs. ExPASy TrEMBL
Match: A0A6D2IUR8 (Integrase catalytic domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS17574 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.0e-11
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 0

Query: 2   WIVHLGATTHICYSREYFTSLKSTPNATVSLPNQ-----TNICTVQVNDNLIFHDVLFIP 61
           W++  GAT HIC+ R  F++ K  P+ TVSLPN        + T+ +  NL+  DVL+IP
Sbjct: 443 WVIDTGATNHICHDRNAFSTFKPLPDTTVSLPNGILVSIVGLGTIPLGSNLVLTDVLYIP 502

Query: 62  SFHFNLISLSSLIIQMPIMIKFVDNSCVLQDKSFVKMI 95
            F FNL+S+SSL   +   I F ++SCV+Q+++   MI
Sbjct: 503 QFKFNLLSVSSLTKSLGCKIWFDESSCVIQERTQGLMI 540

BLAST of Cmc12g0326781 vs. ExPASy TrEMBL
Match: A0A2N9GXX7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32484 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 8.6e-11
Identity = 43/103 (41.75%), Postives = 63/103 (61.17%), Query Frame = 0

Query: 2   WIVHLGATTHICYSREYFTSLKSTPNATVSLPN-----QTNICTVQVNDNLIFHDVLFIP 61
           W++  GAT H+ YS + FT + ST + TV LPN      T+I TV+++++LI  DVL +P
Sbjct: 381 WVIDTGATDHMVYSTKLFTKITSTIHTTVELPNGESALVTHIGTVKISESLILADVLCVP 440

Query: 62  SFHFNLISLSSLIIQMPIMIKFVDNSCVLQDKSFVKMISKASK 100
           SF FNLIS+S L   +   I F+ N C +QD    K+I +  +
Sbjct: 441 SFSFNLISVSKLTSSLNCCIFFLSNLCFIQDLVKWKLIGRGKE 483

BLAST of Cmc12g0326781 vs. ExPASy TrEMBL
Match: A0A151TIF3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_013120 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.5e-10
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 0

Query: 2   WIVHLGATTHICYSREYFTSLKSTPNATVSLPNQT-----NICTVQVNDNLIFHDVLFIP 61
           WI+  GAT+HIC S+  + S  S  N+ V LPN T      I ++++ND++  H+VL+IP
Sbjct: 221 WIIDSGATSHICCSKSLYNSYTSIHNSHVLLPNSTKVNVEGIGSIKINDDIFLHNVLYIP 280

Query: 62  SFHFNLISLSSLIIQMPIMIKFVDNSCVLQDKSFVKMISKASKWNDL 104
           +F FNL+SL +LI   P       NS +LQD   ++ I  A +   L
Sbjct: 281 TFRFNLLSLLTLINNNPFRFTMESNSFLLQDLKTLRTIGTAKQQQGL 327

BLAST of Cmc12g0326781 vs. ExPASy TrEMBL
Match: A0A6J0KZV9 (uncharacterized protein LOC108824502 OS=Raphanus sativus OX=3726 GN=LOC108824502 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.9e-10
Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = 0

Query: 2   WIVHLGATTHICYSREYFTSLKSTPNATVSLPNQ-----TNICTVQVNDNLIFHDVLFIP 61
           WI+  GATTH+CY    F+S+ +    TVSLPN      T+  TV ++D+LI HDVL +P
Sbjct: 448 WIIDSGATTHVCYDLTLFSSVTTVAWVTVSLPNGTREPITHTGTVHLSDSLILHDVLHVP 507

Query: 62  SFHFNLISLSSLIIQMPIMIKFVDNSCVLQDKSFVKMISKAS 99
           SF FNL+S+SSL+ +      F  +SC +Q  +   MI + S
Sbjct: 508 SFRFNLLSVSSLLHRDHHSAHFFFDSCYIQAHTQDLMIGRGS 549

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_031280999.13.2e-1242.99uncharacterized protein LOC116139474 [Pistacia vera][more]
XP_022856063.14.2e-1242.72uncharacterized protein LOC111377235, partial [Olea europaea var. sylvestris][more]
GAU27958.14.7e-1142.39hypothetical protein TSUD_146760 [Trifolium subterraneum][more]
XP_022547699.14.7e-1140.19uncharacterized protein LOC106426940 [Brassica napus][more]
KAG7578768.16.1e-1141.12GAG-pre-integrase domain [Arabidopsis thaliana x Arabidopsis arenosa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2Z6M8V92.3e-1142.39Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_146760 PE=4 SV... [more]
A0A6D2IUR83.0e-1141.84Integrase catalytic domain-containing protein OS=Microthlaspi erraticum OX=16854... [more]
A0A2N9GXX78.6e-1141.75Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32484 PE=4 SV=1[more]
A0A151TIF31.5e-1039.25Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=... [more]
A0A6J0KZV91.9e-1043.14uncharacterized protein LOC108824502 OS=Raphanus sativus OX=3726 GN=LOC108824502... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc12g0326781.1Cmc12g0326781.1mRNA