Cmc12g0326361 (gene) Melon (Charmono) v1.1

Overview
NameCmc12g0326361
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCMiso1.1chr12: 16840512 .. 16841335 (+)
RNA-Seq ExpressionCmc12g0326361
SyntenyCmc12g0326361
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCAGAGTTTTTCTCTTTACATAAGAATCAGATATGGTCGTTGGTTCCAAAGCCTCCTAATCAGAAACTCATTCAATCAAAATTTATTTATAAAATTAAGCCAAGTACAGGAGGTAACAGTAAGCCTAGATATAAGGCTAGGTTGGTAGCCAAGGGCTACACTCAGAAGGAGGGAGTTGACTTTCATGAGATTTTCTCTCCGGTGGTGAGGCATTCGTCTATTAGATTAATCTTATCTATTGCTTTTCACTTTGATATGTTTATTGAATAGATGGACGTCACCATAACATTCCTTCATGAAGAACTGGAGGAAGTGATTTACATGGCTCAACCTAAGGGCTATGAGGTGAAGTGTAAGGAAGACATGGTTTGTCGTCTTTATAAGTCCCTCTATGGACTAAAACAATCTCCAAGACAGTGGTATATAGGTTTGATACTTTCATTCTAATGCAGGAATTCCACAGGAACTCATATGATGCTTGTGTTTATTGGAAACTATCTCAGAAAGGTACGTACATCTATCTACTGTTATATGTAGATGATATGATACTAGTATGTAAGGATTATGCTGAAATATGTGAACTCAAGAGACAATTGAGTAATGAGTTTGAAATGAAAGATTTAGATGAACTAAAAAGGATCCTAGGCATGGATGTAAAGAGAGATAGAAAGAAAGGTTTGTTAACTATTTCGCAGCAGAGTTATGTGATTAAACTGCTTGAAAAGTATAATATGTCTGGTAGGAAGGCAGTTTCAACACCCTTAGCATCTCACTTTAGACTTTCTTTGTCTCAATGTCCTGTTACTAAACAAGGTTAG

mRNA sequence

ATGGAAGCAGAGTTTTTCTCTTTACATAAGAATCAGATATGGTCGTTGGTTCCAAAGCCTCCTAATCAGAAACTCATTCAATCAAAATTTATTTATAAAATTAAGCCAAGTACAGGAGGTAACAGTAAGCCTAGATATAAGGCTAGGTTGGTAGCCAAGGGCTACACTCAGAAGGAGGGAGTTGACTTTCATGAGATTTTCTCTCCGGTGGAATTCCACAGGAACTCATATGATGCTTGTGTTTATTGGAAACTATCTCAGAAAGGTACGTACATCTATCTACTGTTATATGTAGATGATATGATACTAGTATGTAAGGATTATGCTGAAATATGTGAACTCAAGAGACAATTGAGTAATGAGTTTGAAATGAAAGATTTAGATGAACTAAAAAGGATCCTAGGCATGGATGTAAAGAGAGATAGAAAGAAAGGTTTGTTAACTATTTCGCAGCAGAGTTATGTGATTAAACTGCTTGAAAAGTATAATATGTCTGGTAGGAAGGCAGTTTCAACACCCTTAGCATCTCACTTTAGACTTTCTTTGTCTCAATGTCCTGTTACTAAACAAGGTTAG

Coding sequence (CDS)

ATGGAAGCAGAGTTTTTCTCTTTACATAAGAATCAGATATGGTCGTTGGTTCCAAAGCCTCCTAATCAGAAACTCATTCAATCAAAATTTATTTATAAAATTAAGCCAAGTACAGGAGGTAACAGTAAGCCTAGATATAAGGCTAGGTTGGTAGCCAAGGGCTACACTCAGAAGGAGGGAGTTGACTTTCATGAGATTTTCTCTCCGGTGGAATTCCACAGGAACTCATATGATGCTTGTGTTTATTGGAAACTATCTCAGAAAGGTACGTACATCTATCTACTGTTATATGTAGATGATATGATACTAGTATGTAAGGATTATGCTGAAATATGTGAACTCAAGAGACAATTGAGTAATGAGTTTGAAATGAAAGATTTAGATGAACTAAAAAGGATCCTAGGCATGGATGTAAAGAGAGATAGAAAGAAAGGTTTGTTAACTATTTCGCAGCAGAGTTATGTGATTAAACTGCTTGAAAAGTATAATATGTCTGGTAGGAAGGCAGTTTCAACACCCTTAGCATCTCACTTTAGACTTTCTTTGTCTCAATGTCCTGTTACTAAACAAGGTTAG

Protein sequence

MEAEFFSLHKNQIWSLVPKPPNQKLIQSKFIYKIKPSTGGNSKPRYKARLVAKGYTQKEGVDFHEIFSPVEFHRNSYDACVYWKLSQKGTYIYLLLYVDDMILVCKDYAEICELKRQLSNEFEMKDLDELKRILGMDVKRDRKKGLLTISQQSYVIKLLEKYNMSGRKAVSTPLASHFRLSLSQCPVTKQG
Homology
BLAST of Cmc12g0326361 vs. NCBI nr
Match: TYK13826.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 318.2 bits (814), Expect = 5.0e-83
Identity = 175/273 (64.10%), Postives = 180/273 (65.93%), Query Frame = 0

Query: 1   MEAEFFSLHKNQIWSLVPKPPNQKLIQSKFIYKIKPSTGGNSKPRYKARLVAKGYTQKEG 60
           ME E FSLHKNQ WSLVPKPPNQKLIQSK+IYKIKP TGGNSKPRYKARLVAKGYTQKEG
Sbjct: 672 MEEELFSLHKNQTWSLVPKPPNQKLIQSKWIYKIKPGTGGNSKPRYKARLVAKGYTQKEG 731

Query: 61  VDFHEIFSPV-------------------------------------------------- 120
           VDFHEIFSPV                                                  
Sbjct: 732 VDFHEIFSPVVRHSSIRLILSIAVHFDMFIEQMDVTTAFLHGELEEVIYMAQPKGYEVKG 791

Query: 121 ---------------------------------EFHRNSYDACVYWKLSQKGTYIYLLLY 180
                                             FHRNSYDACVYWK SQKGTYIYLLLY
Sbjct: 792 KEDMVCRLHKSLYGLKQSPRQWYIRFDTFILKQGFHRNSYDACVYWKQSQKGTYIYLLLY 851

Query: 181 VDDMILVCKDYAEICELKRQLSNEFEMKDLDELKRILGMDVKRDRKKGLLTISQQSYVIK 191
           VDDMILV KDYAEICELK+QLSNEFEMKDL ELKRILGMDVKRD++KGLLTISQ+SYVIK
Sbjct: 852 VDDMILVSKDYAEICELKKQLSNEFEMKDLGELKRILGMDVKRDKEKGLLTISQESYVIK 911

BLAST of Cmc12g0326361 vs. NCBI nr
Match: TYK25306.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 315.5 bits (807), Expect = 3.2e-82
Identity = 174/273 (63.74%), Postives = 179/273 (65.57%), Query Frame = 0

Query: 1    MEAEFFSLHKNQIWSLVPKPPNQKLIQSKFIYKIKPSTGGNSKPRYKARLVAKGYTQKEG 60
            ME E FSLHKNQ WSLVPKPPNQKLIQSK+IYKIKP TGGNSKPRYKARLVAKGYTQKEG
Sbjct: 842  MEEELFSLHKNQTWSLVPKPPNQKLIQSKWIYKIKPGTGGNSKPRYKARLVAKGYTQKEG 901

Query: 61   VDFHEIFSPV-------------------------------------------------- 120
            VDFHEIFSPV                                                  
Sbjct: 902  VDFHEIFSPVVRHSSIRLILSIAVHFDMFIEQMDVTTAFLHGELEEVIYMAQPKGYEVKG 961

Query: 121  ---------------------------------EFHRNSYDACVYWKLSQKGTYIYLLLY 180
                                              FHRNSYDACVYWK SQKGTYIYLLLY
Sbjct: 962  KEDMVCRLHKSLYGLKQSPRQWYIRFDTFILKQGFHRNSYDACVYWKQSQKGTYIYLLLY 1021

Query: 181  VDDMILVCKDYAEICELKRQLSNEFEMKDLDELKRILGMDVKRDRKKGLLTISQQSYVIK 191
            VDDMILV KDYAEICELK+QLSNEFEMKDL ELKRILGMDVKRD++KGLLTISQ+SYVIK
Sbjct: 1022 VDDMILVSKDYAEICELKKQLSNEFEMKDLGELKRILGMDVKRDKEKGLLTISQESYVIK 1081

BLAST of Cmc12g0326361 vs. NCBI nr
Match: KAA0050719.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 315.5 bits (807), Expect = 3.2e-82
Identity = 174/273 (63.74%), Postives = 179/273 (65.57%), Query Frame = 0

Query: 1    MEAEFFSLHKNQIWSLVPKPPNQKLIQSKFIYKIKPSTGGNSKPRYKARLVAKGYTQKEG 60
            ME E FSLHKNQ WSLVPKPPNQKLIQSK+IYKIKP TGGNSKPRYKARLVAKGYTQKEG
Sbjct: 842  MEEELFSLHKNQTWSLVPKPPNQKLIQSKWIYKIKPGTGGNSKPRYKARLVAKGYTQKEG 901

Query: 61   VDFHEIFSPV-------------------------------------------------- 120
            VDFHEIFSPV                                                  
Sbjct: 902  VDFHEIFSPVVRHSSIRLILSIAVHFDMFIEQMDVTTAFLHGELEEVIYMAQPKGYEVKG 961

Query: 121  ---------------------------------EFHRNSYDACVYWKLSQKGTYIYLLLY 180
                                              FHRNSYDACVYWK SQKGTYIYLLLY
Sbjct: 962  KEDMVCRLHKSLYGLKQSPRQWYIRFDTFILKQGFHRNSYDACVYWKQSQKGTYIYLLLY 1021

Query: 181  VDDMILVCKDYAEICELKRQLSNEFEMKDLDELKRILGMDVKRDRKKGLLTISQQSYVIK 191
            VDDMILV KDYAEICELK+QLSNEFEMKDL ELKRILGMDVKRD++KGLLTISQ+SYVIK
Sbjct: 1022 VDDMILVSKDYAEICELKKQLSNEFEMKDLGELKRILGMDVKRDKEKGLLTISQESYVIK 1081

BLAST of Cmc12g0326361 vs. NCBI nr
Match: KAA0047995.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 288.1 bits (736), Expect = 5.5e-74
Identity = 160/245 (65.31%), Postives = 165/245 (67.35%), Query Frame = 0

Query: 1    MEAEFFSLHKNQIWSLVPKPPNQKLIQSKFIYKIKPSTGGNSKPRYKARLV--------- 60
            ME E FSLHKNQ WSLVPKPPNQKLIQSK+IYKIKP TGGNSKPRYKARL+         
Sbjct: 842  MEEELFSLHKNQTWSLVPKPPNQKLIQSKWIYKIKPGTGGNSKPRYKARLILSIAVHFDM 901

Query: 61   ------------------------AKGYTQKEGVD----------------------FHE 120
                                     KGY  K   D                      F  
Sbjct: 902  FIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSPRQWYISFDT 961

Query: 121  IFSPVEFHRNSYDACVYWKLSQKGTYIYLLLYVDDMILVCKDYAEICELKRQLSNEFEMK 180
                  FHRNSYDACVYWK SQKGTYIYLLLYVDDMILV KDYA ICELK+QLSNEFEMK
Sbjct: 962  FILKQGFHRNSYDACVYWKQSQKGTYIYLLLYVDDMILVSKDYAGICELKKQLSNEFEMK 1021

Query: 181  DLDELKRILGMDVKRDRKKGLLTISQQSYVIKLLEKYNMSGRKAVSTPLASHFRLSLSQC 191
            DL ELKRILGMDVKRDR+KGLLTISQ+SYVIKLLEKYNMS  KAVSTPLASHFRLS SQC
Sbjct: 1022 DLGELKRILGMDVKRDREKGLLTISQESYVIKLLEKYNMSSSKAVSTPLASHFRLSSSQC 1081

BLAST of Cmc12g0326361 vs. NCBI nr
Match: TYK21344.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-65
Identity = 143/195 (73.33%), Postives = 149/195 (76.41%), Query Frame = 0

Query: 1   MEAEFFSLHKNQIWSLVPKPPNQKLIQSKFIYKIKPSTGGNSKPRYKARLVAKGYTQKEG 60
           MEAEFFSLHKNQIWSLVPKP NQKLIQSK IYKIKPSTGGNSKPRYKARLVAKGYTQKEG
Sbjct: 490 MEAEFFSLHKNQIWSLVPKPLNQKLIQSKLIYKIKPSTGGNSKPRYKARLVAKGYTQKEG 549

Query: 61  VDFHEIFSPV-----EFHRNSYDACVY------WKLSQK--------------------- 120
           VDFHEIFSPV      F     +  +Y      +K+  K                     
Sbjct: 550 VDFHEIFSPVMDVTITFLHGELEEVIYMAQPKGYKVKCKEDMVCRLYKSLYGLKQSPRQW 609

Query: 121 --GTYIYLLLYVDDMILVCKDYAEICELKRQLSNEFEMKDLDELKRILGMDVKRDRKKGL 162
             GTYIYLLLYVDDMILVCKDYAEICELKRQLSNEFEMKDLD+LKRILGMDVKRDRKKGL
Sbjct: 610 YIGTYIYLLLYVDDMILVCKDYAEICELKRQLSNEFEMKDLDKLKRILGMDVKRDRKKGL 669

BLAST of Cmc12g0326361 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 5.1e-30
Identity = 88/271 (32.47%), Postives = 124/271 (45.76%), Query Frame = 0

Query: 1    MEAEFFSLHKNQIWSLVPKPPNQKLIQSKFIYKIKPSTGGNSKPRYKARLVAKGYTQKEG 60
            M+ E  SL KN  + LV  P  ++ ++ K+++K+K   G     RYKARLV KG+ QK+G
Sbjct: 830  MQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLK-KDGDCKLVRYKARLVVKGFEQKKG 889

Query: 61   VDFHEIFSPV-------------------------------------------------- 120
            +DF EIFSPV                                                  
Sbjct: 890  IDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAG 949

Query: 121  ------EFHRNSY---------------------------DACVYWKLSQKGTYIYLLLY 180
                  + +++ Y                           D CVY+K   +  +I LLLY
Sbjct: 950  KKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLY 1009

Query: 181  VDDMILVCKDYAEICELKRQLSNEFEMKDLDELKRILGMDVKRDRKKGLLTISQQSYVIK 189
            VDDM++V KD   I +LK  LS  F+MKDL   ++ILGM + R+R    L +SQ+ Y+ +
Sbjct: 1010 VDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIER 1069

BLAST of Cmc12g0326361 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 96.7 bits (239), Expect = 3.1e-19
Identity = 72/259 (27.80%), Postives = 109/259 (42.08%), Query Frame = 0

Query: 9    HK-NQIWSLVPKPPNQKLIQSKFIYKIKPSTGGNSKPRYKARLVAKGYTQKEGVDFHEIF 68
            HK N  W++  +P N+ ++ S++++ +K +  GN   RYKARLVA+G+TQK  +D+ E F
Sbjct: 917  HKINNTWTITKRPENKNIVDSRWVFSVKYNELGN-PIRYKARLVARGFTQKYQIDYEETF 976

Query: 69   SPV--------------------------------------------------------- 128
            +PV                                                         
Sbjct: 977  APVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNSDNVCKLN 1036

Query: 129  ------------------------EFHRNSYDACVYWKLSQKGTY---IYLLLYVDDMIL 183
                                    EF  +S D C+Y  +  KG     IY+LLYVDD+++
Sbjct: 1037 KAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIY--ILDKGNINENIYVLLYVDDVVI 1096

BLAST of Cmc12g0326361 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.8e-12
Identity = 70/255 (27.45%), Postives = 105/255 (41.18%), Query Frame = 0

Query: 11   NQIWSLVPKPPNQ-KLIQSKFIYKIKPSTGGNSKPRYKARLVAKGYTQKEGVDFHEIFSP 70
            N  W LVP PP+   ++  ++I+  K ++ G S  RYKARLVAKGY Q+ G+D+ E FSP
Sbjct: 982  NHTWDLVPPPPSHVTIVGCRWIFTKKYNSDG-SLNRYKARLVAKGYNQRPGLDYAETFSP 1041

Query: 71   V---------------------------EFHRNSYDACVY-------------------- 130
            V                            F + +    VY                    
Sbjct: 1042 VIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLR 1101

Query: 131  ------------WKLS----------------------QKG-TYIYLLLYVDDMILVCKD 183
                        W +                       Q+G + +Y+L+YVDD+++   D
Sbjct: 1102 KALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGND 1161

BLAST of Cmc12g0326361 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10
Identity = 66/255 (25.88%), Postives = 103/255 (40.39%), Query Frame = 0

Query: 11   NQIWSLV-PKPPNQKLIQSKFIYKIKPSTGGNSKPRYKARLVAKGYTQKEGVDFHEIFSP 70
            N  W LV P PP+  ++  ++I+  K ++ G S  RYKARLVAKGY Q+ G+D+ E FSP
Sbjct: 965  NHTWDLVPPPPPSVTIVGCRWIFTKKFNSDG-SLNRYKARLVAKGYNQRPGLDYAETFSP 1024

Query: 71   V------------------------------------EFHR------------------- 130
            V                                    E +                    
Sbjct: 1025 VIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLR 1084

Query: 131  ---------------------------NSYDACVYWKLSQKGTYIYLLLYVDDMILVCKD 183
                                       NS      + L +  + IY+L+YVDD+++   D
Sbjct: 1085 KAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGND 1144

BLAST of Cmc12g0326361 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-09
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 0

Query: 1   MEAEFFSLHKNQIWSLVPKPPNQKLIQSKFIYKIKPSTGGNSKPRYKARLVAKGYTQKEG 60
           M+ E  +L +N+ W LVP P NQ ++  K+++K K  + G +  R KARLVAKG+ Q+EG
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDG-TLDRLKARLVAKGFHQEEG 103

Query: 61  VDFHEIFSPV 71
           + F E +SPV
Sbjct: 104 IYFVETYSPV 112

BLAST of Cmc12g0326361 vs. ExPASy TrEMBL
Match: A0A5D3CTV2 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00910 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.4e-83
Identity = 175/273 (64.10%), Postives = 180/273 (65.93%), Query Frame = 0

Query: 1   MEAEFFSLHKNQIWSLVPKPPNQKLIQSKFIYKIKPSTGGNSKPRYKARLVAKGYTQKEG 60
           ME E FSLHKNQ WSLVPKPPNQKLIQSK+IYKIKP TGGNSKPRYKARLVAKGYTQKEG
Sbjct: 672 MEEELFSLHKNQTWSLVPKPPNQKLIQSKWIYKIKPGTGGNSKPRYKARLVAKGYTQKEG 731

Query: 61  VDFHEIFSPV-------------------------------------------------- 120
           VDFHEIFSPV                                                  
Sbjct: 732 VDFHEIFSPVVRHSSIRLILSIAVHFDMFIEQMDVTTAFLHGELEEVIYMAQPKGYEVKG 791

Query: 121 ---------------------------------EFHRNSYDACVYWKLSQKGTYIYLLLY 180
                                             FHRNSYDACVYWK SQKGTYIYLLLY
Sbjct: 792 KEDMVCRLHKSLYGLKQSPRQWYIRFDTFILKQGFHRNSYDACVYWKQSQKGTYIYLLLY 851

Query: 181 VDDMILVCKDYAEICELKRQLSNEFEMKDLDELKRILGMDVKRDRKKGLLTISQQSYVIK 191
           VDDMILV KDYAEICELK+QLSNEFEMKDL ELKRILGMDVKRD++KGLLTISQ+SYVIK
Sbjct: 852 VDDMILVSKDYAEICELKKQLSNEFEMKDLGELKRILGMDVKRDKEKGLLTISQESYVIK 911

BLAST of Cmc12g0326361 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.6e-82
Identity = 174/273 (63.74%), Postives = 179/273 (65.57%), Query Frame = 0

Query: 1    MEAEFFSLHKNQIWSLVPKPPNQKLIQSKFIYKIKPSTGGNSKPRYKARLVAKGYTQKEG 60
            ME E FSLHKNQ WSLVPKPPNQKLIQSK+IYKIKP TGGNSKPRYKARLVAKGYTQKEG
Sbjct: 842  MEEELFSLHKNQTWSLVPKPPNQKLIQSKWIYKIKPGTGGNSKPRYKARLVAKGYTQKEG 901

Query: 61   VDFHEIFSPV-------------------------------------------------- 120
            VDFHEIFSPV                                                  
Sbjct: 902  VDFHEIFSPVVRHSSIRLILSIAVHFDMFIEQMDVTTAFLHGELEEVIYMAQPKGYEVKG 961

Query: 121  ---------------------------------EFHRNSYDACVYWKLSQKGTYIYLLLY 180
                                              FHRNSYDACVYWK SQKGTYIYLLLY
Sbjct: 962  KEDMVCRLHKSLYGLKQSPRQWYIRFDTFILKQGFHRNSYDACVYWKQSQKGTYIYLLLY 1021

Query: 181  VDDMILVCKDYAEICELKRQLSNEFEMKDLDELKRILGMDVKRDRKKGLLTISQQSYVIK 191
            VDDMILV KDYAEICELK+QLSNEFEMKDL ELKRILGMDVKRD++KGLLTISQ+SYVIK
Sbjct: 1022 VDDMILVSKDYAEICELKKQLSNEFEMKDLGELKRILGMDVKRDKEKGLLTISQESYVIK 1081

BLAST of Cmc12g0326361 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.6e-82
Identity = 174/273 (63.74%), Postives = 179/273 (65.57%), Query Frame = 0

Query: 1    MEAEFFSLHKNQIWSLVPKPPNQKLIQSKFIYKIKPSTGGNSKPRYKARLVAKGYTQKEG 60
            ME E FSLHKNQ WSLVPKPPNQKLIQSK+IYKIKP TGGNSKPRYKARLVAKGYTQKEG
Sbjct: 842  MEEELFSLHKNQTWSLVPKPPNQKLIQSKWIYKIKPGTGGNSKPRYKARLVAKGYTQKEG 901

Query: 61   VDFHEIFSPV-------------------------------------------------- 120
            VDFHEIFSPV                                                  
Sbjct: 902  VDFHEIFSPVVRHSSIRLILSIAVHFDMFIEQMDVTTAFLHGELEEVIYMAQPKGYEVKG 961

Query: 121  ---------------------------------EFHRNSYDACVYWKLSQKGTYIYLLLY 180
                                              FHRNSYDACVYWK SQKGTYIYLLLY
Sbjct: 962  KEDMVCRLHKSLYGLKQSPRQWYIRFDTFILKQGFHRNSYDACVYWKQSQKGTYIYLLLY 1021

Query: 181  VDDMILVCKDYAEICELKRQLSNEFEMKDLDELKRILGMDVKRDRKKGLLTISQQSYVIK 191
            VDDMILV KDYAEICELK+QLSNEFEMKDL ELKRILGMDVKRD++KGLLTISQ+SYVIK
Sbjct: 1022 VDDMILVSKDYAEICELKKQLSNEFEMKDLGELKRILGMDVKRDKEKGLLTISQESYVIK 1081

BLAST of Cmc12g0326361 vs. ExPASy TrEMBL
Match: A0A5A7U2U7 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00590 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.7e-74
Identity = 160/245 (65.31%), Postives = 165/245 (67.35%), Query Frame = 0

Query: 1    MEAEFFSLHKNQIWSLVPKPPNQKLIQSKFIYKIKPSTGGNSKPRYKARLV--------- 60
            ME E FSLHKNQ WSLVPKPPNQKLIQSK+IYKIKP TGGNSKPRYKARL+         
Sbjct: 842  MEEELFSLHKNQTWSLVPKPPNQKLIQSKWIYKIKPGTGGNSKPRYKARLILSIAVHFDM 901

Query: 61   ------------------------AKGYTQKEGVD----------------------FHE 120
                                     KGY  K   D                      F  
Sbjct: 902  FIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSPRQWYISFDT 961

Query: 121  IFSPVEFHRNSYDACVYWKLSQKGTYIYLLLYVDDMILVCKDYAEICELKRQLSNEFEMK 180
                  FHRNSYDACVYWK SQKGTYIYLLLYVDDMILV KDYA ICELK+QLSNEFEMK
Sbjct: 962  FILKQGFHRNSYDACVYWKQSQKGTYIYLLLYVDDMILVSKDYAGICELKKQLSNEFEMK 1021

Query: 181  DLDELKRILGMDVKRDRKKGLLTISQQSYVIKLLEKYNMSGRKAVSTPLASHFRLSLSQC 191
            DL ELKRILGMDVKRDR+KGLLTISQ+SYVIKLLEKYNMS  KAVSTPLASHFRLS SQC
Sbjct: 1022 DLGELKRILGMDVKRDREKGLLTISQESYVIKLLEKYNMSSSKAVSTPLASHFRLSSSQC 1081

BLAST of Cmc12g0326361 vs. ExPASy TrEMBL
Match: A0A5D3DCM9 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1814G00120 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 6.0e-66
Identity = 143/195 (73.33%), Postives = 149/195 (76.41%), Query Frame = 0

Query: 1   MEAEFFSLHKNQIWSLVPKPPNQKLIQSKFIYKIKPSTGGNSKPRYKARLVAKGYTQKEG 60
           MEAEFFSLHKNQIWSLVPKP NQKLIQSK IYKIKPSTGGNSKPRYKARLVAKGYTQKEG
Sbjct: 490 MEAEFFSLHKNQIWSLVPKPLNQKLIQSKLIYKIKPSTGGNSKPRYKARLVAKGYTQKEG 549

Query: 61  VDFHEIFSPV-----EFHRNSYDACVY------WKLSQK--------------------- 120
           VDFHEIFSPV      F     +  +Y      +K+  K                     
Sbjct: 550 VDFHEIFSPVMDVTITFLHGELEEVIYMAQPKGYKVKCKEDMVCRLYKSLYGLKQSPRQW 609

Query: 121 --GTYIYLLLYVDDMILVCKDYAEICELKRQLSNEFEMKDLDELKRILGMDVKRDRKKGL 162
             GTYIYLLLYVDDMILVCKDYAEICELKRQLSNEFEMKDLD+LKRILGMDVKRDRKKGL
Sbjct: 610 YIGTYIYLLLYVDDMILVCKDYAEICELKRQLSNEFEMKDLDKLKRILGMDVKRDRKKGL 669

BLAST of Cmc12g0326361 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-17
Identity = 71/260 (27.31%), Postives = 109/260 (41.92%), Query Frame = 0

Query: 1   MEAEFFSLHKNQIWSLVPKPPNQKLIQSKFIYKIKPSTGGNSKPRYKARLVAKGYTQKEG 60
           M+ E  ++     W +   PPN+K I  K++YKIK ++ G  + RYKARLVAKGYTQ+EG
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIE-RYKARLVAKGYTQQEG 161

Query: 61  VDFHEIFSPV---------------------------EFHRNSYDACVYWKL-----SQK 120
           +DF E FSPV                            F     D  +Y KL     +++
Sbjct: 162 IDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQ 221

Query: 121 G------------------------------------------------------TYIYL 175
           G                                                       ++ +
Sbjct: 222 GDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCV 281

BLAST of Cmc12g0326361 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-10
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 0

Query: 1   MEAEFFSLHKNQIWSLVPKPPNQKLIQSKFIYKIKPSTGGNSKPRYKARLVAKGYTQKEG 60
           M+ E  +L +N+ W LVP P NQ ++  K+++K K  + G +  R KARLVAKG+ Q+EG
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDG-TLDRLKARLVAKGFHQEEG 103

Query: 61  VDFHEIFSPV 71
           + F E +SPV
Sbjct: 104 IYFVETYSPV 112

BLAST of Cmc12g0326361 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 8.9e-06
Identity = 35/92 (38.04%), Postives = 48/92 (52.17%), Query Frame = 0

Query: 92  IYLLLYVDDMILVCKDYAEICELKRQLSNEFEMKDLDELKRILGMDVKRDRKKGLLTISQ 151
           +YLLLYVDD++L       +  L  QLS+ F MKDL  +   LG+ +K     GL  +SQ
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIK-THPSGLF-LSQ 60

Query: 152 QSYVIKLLEKYNMSGRKAVSTPLASHFRLSLS 184
             Y  ++L    M   K +STPL      S+S
Sbjct: 61  TKYAEQILNNAGMLDCKPMSTPLPLKLNSSVS 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK13826.15.0e-8364.10putative polyprotein [Cucumis melo var. makuwa][more]
TYK25306.13.2e-8263.74putative gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0050719.13.2e-8263.74putative gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0047995.15.5e-7465.31retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa... [more]
TYK21344.11.2e-6573.33retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P109785.1e-3032.47Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041463.1e-1927.80Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Q94HW24.8e-1227.45Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT941.2e-1025.88Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P925202.2e-0945.71Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A5D3CTV22.4e-8364.10Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488... [more]
A0A5D3DNU11.6e-8263.74Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A5A7UB251.6e-8263.74Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... [more]
A0A5A7U2U72.7e-7465.31Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku... [more]
A0A5D3DCM96.0e-6673.33Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw... [more]
Match NameE-valueIdentityDescription
AT4G23160.12.3e-1727.31cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00820.11.6e-1045.71Reverse transcriptase (RNA-dependent DNA polymerase) [more]
ATMG00810.18.9e-0638.04DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 11..70
e-value: 7.3E-12
score: 45.4
coord: 71..174
e-value: 2.2E-17
score: 63.5
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 71..180

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc12g0326361.1Cmc12g0326361.1mRNA