Cmc12g0325321 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc12g0325321
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrotransposon protein
Location	CMiso1.1chr12: 15460720 .. 15461633 (+)
RNA-Seq Expression	Cmc12g0325321
Synteny	Cmc12g0325321

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCATGGCTCAGACCTTGTCTGTCGCCAAAGTACGAGAATGGACCGAAGATGTTTCGCCATTTTGTGTCACCTACTGAGGACCATTGCTGGACTAACGTCGACGGAAGTCGTCGATGTTGAGGAGATGGTAGCAATGTTCCTCAACATTCTCGCGCACGACGTGAAAAATCGTGTCATTCAACGAGAGTTCATGCGGTTGGGTGAGACAATTTCCCGCCATTTCAACATGGTCTTGTTGGCCGTCATTCGACTTCATCAGGAGCTTTTGAAAAAACCACAACCAGTGCCTAATGATTGCACAGATCAAAGATGGAGGTGGTTTGAGGTACACATTTATCTCGAACTACGTACTTCCAACACAACGACGTTAGTTCTTCTAAAAAATTTTGAGTTATGCGTTGTAGAATTGCCTAGGTGCATTAGATGGAACGTACATAAAAGTGAACGTTCCAGCAAGTGATCGGGCTAGGTATAGAACACGCAAGGGGGAGGTGGCCACAAATGTACTTGGTGTGTGTGACACGAAAGGAGATTTCATTTACGTACTTGCCGGTTGGGAAGGATCAGCTGCAGACTCACGTATCCTCCGTGATGCCCTTTCAAGACCTAATGGGCTGAAGGTGCCCAAGGGTAAGTAACAACGGTATTGTACCTATGAATGCAATTTTGCAAGTAACAGCTGCGACATTTTAATCGTGCATTGTGGTCACAGGGTATTACTACCTGGTTGATGTCGGGTACCCAAATGCGGAGGGTTTCCTGGCACCATACAGAGGCCAACGCTATCACTTGCAAGAATGGCGTGGCCCTGAAAATGCACCTTCAACGTCGAAAAAGTTCTTCAATATGAAGCATTCGTCTGCTCGTAATGTAATTGAAAGAGCATTCGGTGTCTTGAAGGGTCGATGA

mRNA sequence

ATGATTCATGGCTCAGACCTTGTCTGTCGCCAAAGTACGAGAATGGACCGAAGATGTTTCGCCATTTTGTGTCACCTACTGAGGACCATTGCTGGACTAACGTCGACGGAAGTCGTCGATGTTGAGGAGATGGTAGCAATGTTCCTCAACATTCTCGCGCACGACGTGAAAAATCGTGTCATTCAACGAGAGTTCATGCGGTTGGGTGAGACAATTTCCCGCCATTTCAACATGGTCTTGTTGGCCGTCATTCGACTTCATCAGGAGCTTTTGAAAAAACCACAACCAGTGCCTAATGATTGCACAGATCAAAGATGGAGGTGGTTTGAGAATTGCCTAGGTGCATTAGATGGAACGTACATAAAAGTGAACGTTCCAGCAAGTGATCGGGCTAGGTATAGAACACGCAAGGGGGAGGTGGCCACAAATGTACTTGGTGTGTGTGACACGAAAGGAGATTTCATTTACGTACTTGCCGGTTGGGAAGGATCAGCTGCAGACTCACGTATCCTCCGTGATGCCCTTTCAAGACCTAATGGGCTGAAGGTGCCCAAGGGGTATTACTACCTGGTTGATGTCGGGTACCCAAATGCGGAGGGTTTCCTGGCACCATACAGAGGCCAACGCTATCACTTGCAAGAATGGCGTGGCCCTGAAAATGCACCTTCAACGTCGAAAAAGTTCTTCAATATGAAGCATTCGTCTGCTCGTAATGTAATTGAAAGAGCATTCGGTGTCTTGAAGGGTCGATGA

Coding sequence (CDS)

ATGATTCATGGCTCAGACCTTGTCTGTCGCCAAAGTACGAGAATGGACCGAAGATGTTTCGCCATTTTGTGTCACCTACTGAGGACCATTGCTGGACTAACGTCGACGGAAGTCGTCGATGTTGAGGAGATGGTAGCAATGTTCCTCAACATTCTCGCGCACGACGTGAAAAATCGTGTCATTCAACGAGAGTTCATGCGGTTGGGTGAGACAATTTCCCGCCATTTCAACATGGTCTTGTTGGCCGTCATTCGACTTCATCAGGAGCTTTTGAAAAAACCACAACCAGTGCCTAATGATTGCACAGATCAAAGATGGAGGTGGTTTGAGAATTGCCTAGGTGCATTAGATGGAACGTACATAAAAGTGAACGTTCCAGCAAGTGATCGGGCTAGGTATAGAACACGCAAGGGGGAGGTGGCCACAAATGTACTTGGTGTGTGTGACACGAAAGGAGATTTCATTTACGTACTTGCCGGTTGGGAAGGATCAGCTGCAGACTCACGTATCCTCCGTGATGCCCTTTCAAGACCTAATGGGCTGAAGGTGCCCAAGGGGTATTACTACCTGGTTGATGTCGGGTACCCAAATGCGGAGGGTTTCCTGGCACCATACAGAGGCCAACGCTATCACTTGCAAGAATGGCGTGGCCCTGAAAATGCACCTTCAACGTCGAAAAAGTTCTTCAATATGAAGCATTCGTCTGCTCGTAATGTAATTGAAAGAGCATTCGGTGTCTTGAAGGGTCGATGA

Protein sequence

MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLNILAHDVKNRVIQREFMRLGETISRHFNMVLLAVIRLHQELLKKPQPVPNDCTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFIYVLAGWEGSAADSRILRDALSRPNGLKVPKGYYYLVDVGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKKFFNMKHSSARNVIERAFGVLKGR

Homology

[Close]

BLAST of Cmc12g0325321 vs. NCBI nr
Match: KAA0035620.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0041646.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047363.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0048378.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 505.8 bits (1301), Expect = 2.2e-139
Identity = 242/250 (96.80%), Postives = 247/250 (98.80%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLNILAHDVKNRV 60
           MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFL+ILAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQREFMRLGETISRHFNMVLLAVIRLHQELLKKPQPVPNDCTDQRWRWFENCLGALDGTY 120
           IQREFMR GETISRHFNMVLLAVIRLH+ELLKKPQPVPN+CTDQRWRWFENCLGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFIYVLAGWEGSAADSRILRDALSRPNG 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDF+YVLAGWEGSAADSRILRDALSRPN 
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 232

Query: 181 LKVPKGYYYLVDVGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKKFFNMKHSSARNVI 240
           LKVPKGYYYLVD GYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSK+FFNMKHSSARNVI
Sbjct: 233 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVI 292

Query: 241 ERAFGVLKGR 251
           ERAFGVLKGR
Sbjct: 293 ERAFGVLKGR 302

[Close]

BLAST of Cmc12g0325321 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 505.0 bits (1299), Expect = 3.8e-139
Identity = 242/250 (96.80%), Postives = 246/250 (98.40%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLNILAHDVKNRV 60
           MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFL+ILAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQREFMRLGETISRHFNMVLLAVIRLHQELLKKPQPVPNDCTDQRWRWFENCLGALDGTY 120
           IQREFMR GETISRHFNMVLLAVIRLH ELLKKPQPVPN+CTDQRWRWFENCLGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFIYVLAGWEGSAADSRILRDALSRPNG 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDF+YVLAGWEGSAADSRILRDALSRPN 
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 232

Query: 181 LKVPKGYYYLVDVGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKKFFNMKHSSARNVI 240
           LKVPKGYYYLVD GYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSK+FFNMKHSSARNVI
Sbjct: 233 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVI 292

Query: 241 ERAFGVLKGR 251
           ERAFGVLKGR
Sbjct: 293 ERAFGVLKGR 302

[Close]

BLAST of Cmc12g0325321 vs. NCBI nr
Match: KAA0051057.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 500.0 bits (1286), Expect = 1.2e-137
Identity = 239/250 (95.60%), Postives = 244/250 (97.60%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLNILAHDVKNRV 60
           MIHGSDLVC QSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFL+IL HDVKNRV
Sbjct: 53  MIHGSDLVCHQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILVHDVKNRV 112

Query: 61  IQREFMRLGETISRHFNMVLLAVIRLHQELLKKPQPVPNDCTDQRWRWFENCLGALDGTY 120
           IQREFMR GETISRHFNMVLLAVIRLH+ELLKKPQPVPN+CTDQRWRWFENCLGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFIYVLAGWEGSAADSRILRDALSRPNG 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDF+YVLAGWEGSAADSRILRDALSRPN 
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 232

Query: 181 LKVPKGYYYLVDVGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKKFFNMKHSSARNVI 240
           LKVPKGYYYLVD GYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSK+FFNMKHS ARNVI
Sbjct: 233 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSFARNVI 292

Query: 241 ERAFGVLKGR 251
           ERAFGVLKGR
Sbjct: 293 ERAFGVLKGR 302

[Close]

BLAST of Cmc12g0325321 vs. NCBI nr
Match: KAA0048361.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 499.2 bits (1284), Expect = 2.1e-137
Identity = 239/250 (95.60%), Postives = 245/250 (98.00%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLNILAHDVKNRV 60
           MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFL+ILAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQREFMRLGETISRHFNMVLLAVIRLHQELLKKPQPVPNDCTDQRWRWFENCLGALDGTY 120
           IQREFMR GETISRHFNMVLLAVIRLH+ELLKKPQPVPN+CTDQRW+WFENCLGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFIYVLAGWEGSAADSRILRDALSRPNG 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDF+YVLAGWEG AADSRILRDALSRPN 
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGLAADSRILRDALSRPNR 232

Query: 181 LKVPKGYYYLVDVGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKKFFNMKHSSARNVI 240
           LKVPKGYYYLVD GY NAEGFLAPYRGQRYHLQEWRGPENAPSTSK+FFNMKHSSARNVI
Sbjct: 233 LKVPKGYYYLVDAGYQNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVI 292

Query: 241 ERAFGVLKGR 251
           ERAFGVLKGR
Sbjct: 293 ERAFGVLKGR 302

[Close]

BLAST of Cmc12g0325321 vs. NCBI nr
Match: KAA0065893.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 498.4 bits (1282), Expect = 3.5e-137
Identity = 240/250 (96.00%), Postives = 244/250 (97.60%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLNILAHDVKNRV 60
           MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFL ILAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLYILAHDVKNRV 112

Query: 61  IQREFMRLGETISRHFNMVLLAVIRLHQELLKKPQPVPNDCTDQRWRWFENCLGALDGTY 120
           IQREFMR GETISRHFNMVLLAVIRLH+ELLKKPQPVPN+CTDQRWRWFENCLGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFIYVLAGWEGSAADSRILRDALSRPNG 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDF+YVLAGWEGSAADSRIL DALSRPN 
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILCDALSRPNR 232

Query: 181 LKVPKGYYYLVDVGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKKFFNMKHSSARNVI 240
           LKVPKGYYYLVD GYPNAEGFLAPYRGQRYHLQEW GPENAPSTSK+FFNMKHSSARNVI
Sbjct: 233 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWCGPENAPSTSKEFFNMKHSSARNVI 292

Query: 241 ERAFGVLKGR 251
           ERAFGVLKGR
Sbjct: 293 ERAFGVLKGR 302

[Close]

BLAST of Cmc12g0325321 vs. ExPASy TrEMBL
Match: A0A5D3BDX0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00360 PE=3 SV=1)

HSP 1 Score: 505.8 bits (1301), Expect = 1.1e-139
Identity = 242/250 (96.80%), Postives = 247/250 (98.80%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLNILAHDVKNRV 60
           MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFL+ILAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQREFMRLGETISRHFNMVLLAVIRLHQELLKKPQPVPNDCTDQRWRWFENCLGALDGTY 120
           IQREFMR GETISRHFNMVLLAVIRLH+ELLKKPQPVPN+CTDQRWRWFENCLGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFIYVLAGWEGSAADSRILRDALSRPNG 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDF+YVLAGWEGSAADSRILRDALSRPN 
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 232

Query: 181 LKVPKGYYYLVDVGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKKFFNMKHSSARNVI 240
           LKVPKGYYYLVD GYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSK+FFNMKHSSARNVI
Sbjct: 233 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVI 292

Query: 241 ERAFGVLKGR 251
           ERAFGVLKGR
Sbjct: 293 ERAFGVLKGR 302

[Close]

BLAST of Cmc12g0325321 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 505.0 bits (1299), Expect = 1.8e-139
Identity = 242/250 (96.80%), Postives = 246/250 (98.40%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLNILAHDVKNRV 60
           MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFL+ILAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQREFMRLGETISRHFNMVLLAVIRLHQELLKKPQPVPNDCTDQRWRWFENCLGALDGTY 120
           IQREFMR GETISRHFNMVLLAVIRLH ELLKKPQPVPN+CTDQRWRWFENCLGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFIYVLAGWEGSAADSRILRDALSRPNG 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDF+YVLAGWEGSAADSRILRDALSRPN 
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 232

Query: 181 LKVPKGYYYLVDVGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKKFFNMKHSSARNVI 240
           LKVPKGYYYLVD GYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSK+FFNMKHSSARNVI
Sbjct: 233 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVI 292

Query: 241 ERAFGVLKGR 251
           ERAFGVLKGR
Sbjct: 293 ERAFGVLKGR 302

[Close]

BLAST of Cmc12g0325321 vs. ExPASy TrEMBL
Match: A0A5A7U9H2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00110 PE=3 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 5.8e-138
Identity = 239/250 (95.60%), Postives = 244/250 (97.60%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLNILAHDVKNRV 60
           MIHGSDLVC QSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFL+IL HDVKNRV
Sbjct: 53  MIHGSDLVCHQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILVHDVKNRV 112

Query: 61  IQREFMRLGETISRHFNMVLLAVIRLHQELLKKPQPVPNDCTDQRWRWFENCLGALDGTY 120
           IQREFMR GETISRHFNMVLLAVIRLH+ELLKKPQPVPN+CTDQRWRWFENCLGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFIYVLAGWEGSAADSRILRDALSRPNG 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDF+YVLAGWEGSAADSRILRDALSRPN 
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 232

Query: 181 LKVPKGYYYLVDVGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKKFFNMKHSSARNVI 240
           LKVPKGYYYLVD GYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSK+FFNMKHS ARNVI
Sbjct: 233 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSFARNVI 292

Query: 241 ERAFGVLKGR 251
           ERAFGVLKGR
Sbjct: 293 ERAFGVLKGR 302

[Close]

BLAST of Cmc12g0325321 vs. ExPASy TrEMBL
Match: A0A5A7U476 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00800 PE=3 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 1.0e-137
Identity = 239/250 (95.60%), Postives = 245/250 (98.00%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLNILAHDVKNRV 60
           MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFL+ILAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQREFMRLGETISRHFNMVLLAVIRLHQELLKKPQPVPNDCTDQRWRWFENCLGALDGTY 120
           IQREFMR GETISRHFNMVLLAVIRLH+ELLKKPQPVPN+CTDQRW+WFENCLGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFIYVLAGWEGSAADSRILRDALSRPNG 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDF+YVLAGWEG AADSRILRDALSRPN 
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGLAADSRILRDALSRPNR 232

Query: 181 LKVPKGYYYLVDVGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKKFFNMKHSSARNVI 240
           LKVPKGYYYLVD GY NAEGFLAPYRGQRYHLQEWRGPENAPSTSK+FFNMKHSSARNVI
Sbjct: 233 LKVPKGYYYLVDAGYQNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVI 292

Query: 241 ERAFGVLKGR 251
           ERAFGVLKGR
Sbjct: 293 ERAFGVLKGR 302

[Close]

BLAST of Cmc12g0325321 vs. ExPASy TrEMBL
Match: A0A5A7VCK9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00700 PE=3 SV=1)

HSP 1 Score: 498.4 bits (1282), Expect = 1.7e-137
Identity = 240/250 (96.00%), Postives = 244/250 (97.60%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLNILAHDVKNRV 60
           MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFL ILAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLYILAHDVKNRV 112

Query: 61  IQREFMRLGETISRHFNMVLLAVIRLHQELLKKPQPVPNDCTDQRWRWFENCLGALDGTY 120
           IQREFMR GETISRHFNMVLLAVIRLH+ELLKKPQPVPN+CTDQRWRWFENCLGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFIYVLAGWEGSAADSRILRDALSRPNG 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDF+YVLAGWEGSAADSRIL DALSRPN 
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILCDALSRPNR 232

Query: 181 LKVPKGYYYLVDVGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKKFFNMKHSSARNVI 240
           LKVPKGYYYLVD GYPNAEGFLAPYRGQRYHLQEW GPENAPSTSK+FFNMKHSSARNVI
Sbjct: 233 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWCGPENAPSTSKEFFNMKHSSARNVI 292

Query: 241 ERAFGVLKGR 251
           ERAFGVLKGR
Sbjct: 293 ERAFGVLKGR 302

[Close]

BLAST of Cmc12g0325321 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 175.3 bits (443), Expect = 6.4e-44
Identity = 98/251 (39.04%), Postives = 141/251 (56.18%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLNILAHDVKNRV 60
           +++G +  C ++ RMD+  F  LC LL+T   L  T  + +E  +A+FL I+ H+++ R 
Sbjct: 34  ILNGPNEQCFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRA 93

Query: 61  IQREFMRLGETISRHFNMVLLAVIRLHQELLKKPQPVPN-DCTDQRWRWFENCLGALDGT 120
           +Q  F   GETISRHFN VL AVI + ++     QP  N D  +    +F++C+G +D  
Sbjct: 94  VQELFCYSGETISRHFNNVLNAVIAISKDFF---QPNSNSDTLENDDPYFKDCVGVVDSF 153

Query: 121 YIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFIYVLAGWEGSAADSRILRDALSRPN 180
           +I V V   ++  +R   G +  NVL        F YVLAGWEGSA+D ++L  AL+R N
Sbjct: 154 HIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRN 213

Query: 181 GLKVPKGYYYLVDVGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKKFFNMKHSSARNV 240
            L+VP+G YY+VD  YPN  GF+APY G            N+   +K+ FN +H      
Sbjct: 214 KLQVPQGKYYIVDNKYPNLPGFIAPYHGV---------STNSREEAKEMFNERHKLLHRA 272

Query: 241 IERAFGVLKGR 251
           I R FG LK R
Sbjct: 274 IHRTFGALKER 272

[Close]

BLAST of Cmc12g0325321 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 149.8 bits (377), Expect = 2.9e-36
Identity = 96/259 (37.07%), Postives = 131/259 (50.58%), Query Frame = 0


Query: 9   CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLNILAHDVKNRVIQREFMRL 68
           C Q  RM   CF  LC++L+T   L  T  + +EE VAMFL I  H+   R +   F R 
Sbjct: 66  CLQLLRMSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDVGLRFGRN 125

Query: 69  GETISRHFNMVLLAVIRL---------HQELLKKPQPVPNDCTDQR-WRWFENCLGALDG 128
            ET+ R F  VL A   L          QEL + P+ +     DQR W +F   +GA+DG
Sbjct: 126 QETVQRKFREVLTATELLACDYIRTPTRQELYRIPERLQ---VDQRYWPYFSGFVGAMDG 185

Query: 129 TYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFIYVLAGWEGSAADSRILRDALSRP 188
           T++ V V    +  Y  R    + N++ +CD K  F Y+  G  GS  D+ +L+ A    
Sbjct: 186 THVCVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFTYIWNGAPGSCYDTAVLQIAQQSD 245

Query: 189 NGLKVPKG-YYYLVDVGYPNAEGFLAPYRGQ-----RYHL-QEWRGPENAPSTSKKFFNM 248
           +   +P    YYLVD GYPN +G LAPYR       RYH+ Q + GP   P    + FN 
Sbjct: 246 SEFPLPPSEKYYLVDSGYPNKQGLLAPYRSSRNRVVRYHMSQFYYGPR--PRNKHELFNQ 305

Query: 249 KHSSARNVIERAFGVLKGR 251
            H+S R+VIER F + K +
Sbjct: 306 CHTSLRSVIERTFRIWKNK 319

[Close]

BLAST of Cmc12g0325321 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 109.0 bits (271), Expect = 5.6e-24
Identity = 53/97 (54.64%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 154 FIYVLAGWEGSAADSRILRDALSRPNGLKVPKGYYYLVDVGYPNAEGFLAPYRGQRYHLQ 213
           FIYVL+GWEGSA DSR+L DAL +          +YLVD G+ N   FLAP+RG RYHLQ
Sbjct: 25  FIYVLSGWEGSAHDSRVLSDALRK----------FYLVDCGFANRLNFLAPFRGVRYHLQ 84

Query: 214 EWRGPENAPSTSKKFFNMKHSSARNVIERAFGVLKGR 251
           E+ G    P T  + FN++H S RNVIER FG+ K R
Sbjct: 85  EFAGQRRDPETPHELFNLRHVSLRNVIERIFGIFKSR 111

[Close]

BLAST of Cmc12g0325321 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 94.0 bits (232), Expect = 1.9e-19
Identity = 73/218 (33.49%), Postives = 99/218 (45.41%), Query Frame = 0


Query: 2   IHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLNILAHDVKNRVI 61
           I+ +++ C+   RM    F  LC +L    GL S+  + ++E VA+FL I A +   R I
Sbjct: 17  IYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDI 76

Query: 62  QREFMRLGETISRHFNMVLLAVIRLHQELLKKPQPVPNDCTDQRWRWFENCLGALDGTYI 121
              F    ETI R F+ VL A+ RL  E + +P+ V      +  R   N L        
Sbjct: 77  ALRFGHAQETIWRKFHDVLKAMERLAVEYI-RPRKV------EELRAISNRL-------- 136

Query: 122 KVNVPASDRARY----RTRKGEVATNVLGVCDTKGDFIYVLAGWEGSAADSRILRDALSR 181
                  D  RY        G  + NVL +CD    F Y   G  GS  D+R+L  A+S 
Sbjct: 137 ------QDDTRYWPFLMDLLGIASFNVLAICDLDMLFTYCFVGMAGSTHDARVLSAAISD 196

Query: 182 PNGLKV-PKGYYYLVDVGYPNAEGFLAPYRGQRYHLQE 215
                V P   YYLVD GY N  G+LAPYR +    Q+
Sbjct: 197 DPLFHVPPDSKYYLVDSGYANKRGYLAPYRREHREAQD 213

[Close]

BLAST of Cmc12g0325321 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 85.1 bits (209), Expect = 8.6e-17
Identity = 43/113 (38.05%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 108 WFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFIYVLAGWEGSAAD 167
           +F++C+GA+D T+I   V       +R RKG+++ N+L  C+   +F+YVL+GWEGSA D
Sbjct: 21  YFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHD 80

Query: 168 SRILRDALSR-PNGLKVP---KGYYYLVDVGYPNAEGFLAPYRGQRYHLQEWR 217
           S++L DAL+R  N L VP   +    +V+    N +  L     QR +  +WR
Sbjct: 81  SKVLNDALTRNSNRLPVPEEDESAEEVVEEVNDNNDEVLTTQDQQREYANQWR 133

The following BLAST results are available for this feature:

BLAST of Cmc12g0325321 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035620.1	2.2e-139	96.80	retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon...	[more]
KAA0046727.1	3.8e-139	96.80	retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon...	[more]
KAA0051057.1	1.2e-137	95.60	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048361.1	2.1e-137	95.60	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065893.1	3.5e-137	96.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc12g0325321 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc12g0325321 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BDX0	1.1e-139	96.80	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TXW1	1.8e-139	96.80	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U9H2	5.8e-138	95.60	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U476	1.0e-137	95.60	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VCK9	1.7e-137	96.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Cmc12g0325321 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	6.4e-44	39.04	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	2.9e-36	37.07	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35695.1	5.6e-24	54.64	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G28730.1	1.9e-19	33.49	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28950.1	8.6e-17	38.05	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 116..250 e-value: 1.3E-19 score: 70.4
None	No IPR available	PANTHER	PTHR22930:SF201	NUCLEASE HARBI1-LIKE PROTEIN	coord: 2..250
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 2..250

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc12g0325321.1	Cmc12g0325321.1	mRNA