Cmc12g0323601 (gene) Melon (Charmono) v1.1

Overview
NameCmc12g0323601
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon opus
LocationCMiso1.1chr12: 12621640 .. 12622122 (+)
RNA-Seq ExpressionCmc12g0323601
SyntenyCmc12g0323601
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAGCATATTTTCCGACTTTATTGAAAAATGCATTAAAGTTTTCATGGATGATTTCACAGTTTATGGTGATAGTTTTGATGCATGTTTAGCTAGTCTTGAATTAATTCTAAATAGATGCATAGAAACTAACCTTGTATTGAATTATGAAAAGTGTCATTTCATGGTGTCTCATGGTATAGTTTTAGGACACTTAGTGTCTTCCAAAGGAATAAAGGTAGATAAAGCAAAAATTGACGTTATACAAAAATTGTCATATCCAACATGTTTAAAAGATGTTAGATCCTTCCTTGGTACTGTCGGCTTTTATAGACGGTTTATAAAAGCTTTTTCTAAAATTGCTTTGCCTCTAACTAATCTCTTGCAAAAAGATGTACCATTTCTGATTGATGACAATTGTAAGAAGGCATTTGATGATCTCAAACAAAGGTTAGTCTCTACTCCTATCCTTCAATCTCCTAATTGGAATTTACCTTTCTAA

mRNA sequence

ATGATGAGCATATTTTCCGACTTTATTGAAAAATGCATTAAAGTTTTCATGGATGATTTCACAGTTTATGGTGATAGTTTTGATGCATGTTTAGCTAGTCTTGAATTAATTCTAAATAGATGCATAGAAACTAACCTTGTATTGAATTATGAAAAGTGTCATTTCATGGTGTCTCATGGTATAGTTTTAGGACACTTAGTGTCTTCCAAAGGAATAAAGGTAGATAAAGCAAAAATTGACGTTATACAAAAATTGTCATATCCAACATGTTTAAAAGATGTTAGATCCTTCCTTGGTACTGTCGGCTTTTATAGACGGTTTATAAAAGCTTTTTCTAAAATTGCTTTGCCTCTAACTAATCTCTTGCAAAAAGATGTACCATTTCTGATTGATGACAATTGTAAGAAGGCATTTGATGATCTCAAACAAAGGTTAGTCTCTACTCCTATCCTTCAATCTCCTAATTGGAATTTACCTTTCTAA

Coding sequence (CDS)

ATGATGAGCATATTTTCCGACTTTATTGAAAAATGCATTAAAGTTTTCATGGATGATTTCACAGTTTATGGTGATAGTTTTGATGCATGTTTAGCTAGTCTTGAATTAATTCTAAATAGATGCATAGAAACTAACCTTGTATTGAATTATGAAAAGTGTCATTTCATGGTGTCTCATGGTATAGTTTTAGGACACTTAGTGTCTTCCAAAGGAATAAAGGTAGATAAAGCAAAAATTGACGTTATACAAAAATTGTCATATCCAACATGTTTAAAAGATGTTAGATCCTTCCTTGGTACTGTCGGCTTTTATAGACGGTTTATAAAAGCTTTTTCTAAAATTGCTTTGCCTCTAACTAATCTCTTGCAAAAAGATGTACCATTTCTGATTGATGACAATTGTAAGAAGGCATTTGATGATCTCAAACAAAGGTTAGTCTCTACTCCTATCCTTCAATCTCCTAATTGGAATTTACCTTTCTAA

Protein sequence

MMSIFSDFIEKCIKVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGIVLGHLVSSKGIKVDKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKAFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF
Homology
BLAST of Cmc12g0323601 vs. NCBI nr
Match: KYP30916.1 (Retrovirus-related Pol polyprotein from transposon 17.6, partial [Cajanus cajan])

HSP 1 Score: 251.1 bits (640), Expect = 6.3e-63
Identity = 114/160 (71.25%), Postives = 139/160 (86.88%), Query Frame = 0

Query: 1   MMSIFSDFIEKCIKVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHG 60
           M+SIFSDF+E CI+VFMDDFTVYG SFDACL SL+ +LNRCIETNLVLN+EKCHFMV  G
Sbjct: 33  MLSIFSDFLENCIEVFMDDFTVYGSSFDACLDSLDRVLNRCIETNLVLNFEKCHFMVEQG 92

Query: 61  IVLGHLVSSKGIKVDKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKAFSKIALPLTN 120
           IVLGH++SSKGI+VD AK+ VI +L YP+C+++VRSFLG  GFYRRF+K FSK ALPL+N
Sbjct: 93  IVLGHIISSKGIEVDPAKVSVISQLPYPSCVREVRSFLGHAGFYRRFVKEFSKKALPLSN 152

Query: 121 LLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF 161
           LLQKDV F+ DD CK+AFD LK+ L +TPI+Q+P+W +PF
Sbjct: 153 LLQKDVDFVFDDRCKQAFDCLKEALTTTPIIQAPDWTVPF 192

BLAST of Cmc12g0323601 vs. NCBI nr
Match: KYP35881.1 (Transposon Ty3-G Gag-Pol polyprotein, partial [Cajanus cajan])

HSP 1 Score: 248.8 bits (634), Expect = 3.1e-62
Identity = 113/160 (70.62%), Postives = 138/160 (86.25%), Query Frame = 0

Query: 1   MMSIFSDFIEKCIKVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHG 60
           M+SIFSDF+E CI++FMDDFTVYG SFDACL SL+  LNRCIETNLVLN+EKCHFMV  G
Sbjct: 495 MLSIFSDFLENCIELFMDDFTVYGSSFDACLDSLDRFLNRCIETNLVLNFEKCHFMVEQG 554

Query: 61  IVLGHLVSSKGIKVDKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKAFSKIALPLTN 120
           IVLGH++SSKGI+VD AK+ VI +L YP+C+++VRSFLG  GFYRRF+K FSK ALPL+N
Sbjct: 555 IVLGHIISSKGIEVDPAKVSVISQLPYPSCVREVRSFLGHAGFYRRFVKEFSKKALPLSN 614

Query: 121 LLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF 161
           LLQKDV F+ DD CK+AFD LK+ L +TPI+Q+P+W +PF
Sbjct: 615 LLQKDVDFVFDDRCKQAFDCLKEALTTTPIIQAPDWTVPF 654

BLAST of Cmc12g0323601 vs. NCBI nr
Match: KYP44321.1 (Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan])

HSP 1 Score: 246.5 bits (628), Expect = 1.5e-61
Identity = 112/160 (70.00%), Postives = 139/160 (86.88%), Query Frame = 0

Query: 1   MMSIFSDFIEKCIKVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHG 60
           M+SIFSDF+E CI+VFMDDFTVYG SFDACL SL+ +LNRCIETNLVLN+EKCHFMV  G
Sbjct: 1   MLSIFSDFLENCIEVFMDDFTVYGSSFDACLDSLDRVLNRCIETNLVLNFEKCHFMVEQG 60

Query: 61  IVLGHLVSSKGIKVDKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKAFSKIALPLTN 120
           IVLG+++SSKGI+VD AK+ VI +L YP+C+++VRSFLG  GFYRRF++ FSK ALPL+N
Sbjct: 61  IVLGNIISSKGIEVDLAKVSVISQLPYPSCMREVRSFLGHAGFYRRFVEEFSKKALPLSN 120

Query: 121 LLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF 161
           LLQKDV F+ DD CK+AFD LK+ L +TPI+Q+P+W +PF
Sbjct: 121 LLQKDVDFVFDDKCKQAFDCLKKALTTTPIIQAPDWTVPF 160

BLAST of Cmc12g0323601 vs. NCBI nr
Match: KYP55026.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cajanus cajan])

HSP 1 Score: 246.1 bits (627), Expect = 2.0e-61
Identity = 114/160 (71.25%), Postives = 137/160 (85.62%), Query Frame = 0

Query: 1   MMSIFSDFIEKCIKVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHG 60
           M+SIFSDF+E CIKVFMDDFTVYG SFDACL SL+ +LNRCIETNLVLN+EKCHFMV  G
Sbjct: 62  MLSIFSDFLENCIKVFMDDFTVYGSSFDACLNSLDRVLNRCIETNLVLNFEKCHFMVEQG 121

Query: 61  IVLGHLVSSKGIKVDKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKAFSKIALPLTN 120
           IVLGH++SS+GI+VD AKI VI +L YP+C+++VRSFLG  GFYRRFIK FSK ALPL++
Sbjct: 122 IVLGHIISSRGIQVDPAKISVIAQLPYPSCVREVRSFLGHAGFYRRFIKDFSKKALPLSS 181

Query: 121 LLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF 161
           LLQKD+ F  DD CK+AFD LK  L +TPI+Q+P+W +PF
Sbjct: 182 LLQKDIEFDFDDRCKEAFDCLKTALTTTPIIQAPDWTVPF 221

BLAST of Cmc12g0323601 vs. NCBI nr
Match: XP_020202854.1 (uncharacterized protein LOC109788523, partial [Cajanus cajan])

HSP 1 Score: 245.7 bits (626), Expect = 2.6e-61
Identity = 111/160 (69.38%), Postives = 138/160 (86.25%), Query Frame = 0

Query: 1   MMSIFSDFIEKCIKVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHG 60
           M+SIFSDF+E CI+VFMDDFTV G SFDACL SL+ +LNRCIETNL+LN+EKCHFMV  G
Sbjct: 328 MLSIFSDFLENCIEVFMDDFTVNGCSFDACLDSLDRVLNRCIETNLILNFEKCHFMVEQG 387

Query: 61  IVLGHLVSSKGIKVDKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKAFSKIALPLTN 120
           I+LGH++SSKGI+VD AK+ VI +L YP+C+++VRSFLG  GFYRRF+K FSK ALPL+N
Sbjct: 388 IILGHIISSKGIEVDPAKVSVISQLPYPSCVREVRSFLGHAGFYRRFVKEFSKKALPLSN 447

Query: 121 LLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF 161
           LLQKDV F+ DD CK+AFD LK+ L +TPI+Q+P+W +PF
Sbjct: 448 LLQKDVDFVFDDRCKQAFDCLKEALTTTPIIQAPDWTVPF 487

BLAST of Cmc12g0323601 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.3e-23
Identity = 58/168 (34.52%), Postives = 95/168 (56.55%), Query Frame = 0

Query: 4   IFSDFIEKCIKVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGIVL 63
           I  + I K   V++DD  V+ + +D    +L L+L    + NL +N EK HF+ +    L
Sbjct: 268 ILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFL 327

Query: 64  GHLVSSKGIKVDKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKAFSKIALPLTNLLQ 123
           G++V++ GIK D  K+  I ++  PT +K+++ FLG   +YR+FI+ ++K+A PLTNL +
Sbjct: 328 GYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTR 387

Query: 124 -----------KDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF 161
                        VP  +D+   ++F+DLK  L S+ IL  P +  PF
Sbjct: 388 GLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPF 435

BLAST of Cmc12g0323601 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 7.3e-22
Identity = 57/161 (35.40%), Postives = 87/161 (54.04%), Query Frame = 0

Query: 1   MMSIFSDFIEKCIKVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHG 60
           M  I    + K   V++DD  V+  S D  L SL L+  +  + NL L  +KC F+    
Sbjct: 349 MNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQET 408

Query: 61  IVLGHLVSSKGIKVDKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKAFSKIALPLTN 120
             LGH+++  GIK +  KI+ IQK   PT  K++++FLG  G+YR+FI  F+ IA P+T 
Sbjct: 409 TFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTK 468

Query: 121 LLQKDVPF-LIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF 161
            L+K++     +     AF  LK  +   PIL+ P++   F
Sbjct: 469 CLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKF 509

BLAST of Cmc12g0323601 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-21
Identity = 62/161 (38.51%), Postives = 86/161 (53.42%), Query Frame = 0

Query: 1   MMSI-FSDFIEKCIKVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSH 60
           MM+I FS        ++MDD  V G S    L +L  +  +C E NL L+ EKC F +  
Sbjct: 456 MMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKLHPEKCSFFMHE 515

Query: 61  GIVLGHLVSSKGIKVDKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKAFSKIALPLT 120
              LGH  + KGI  D  K DVIQ    P      R F+    +YRRFIK F+  +  +T
Sbjct: 516 VTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFADYSRHIT 575

Query: 121 NLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF 161
            L +K+VPF   D C+KAF  LK +L++  +LQ P+++  F
Sbjct: 576 RLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEF 616

BLAST of Cmc12g0323601 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.3e-20
Identity = 55/164 (33.54%), Postives = 88/164 (53.66%), Query Frame = 0

Query: 1   MMSIFSDFIEKCIKVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHG 60
           M +I    + K   V++DD  ++  S    L S++L+  +  + NL L  +KC F+    
Sbjct: 348 MNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEA 407

Query: 61  IVLGHLVSSKGIKVDKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKAFSKIALPLTN 120
             LGH+V+  GIK +  K+  I     PT  K++R+FLG  G+YR+FI  ++ IA P+T+
Sbjct: 408 NFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTS 467

Query: 121 LLQKDVPFLIDDNCK----KAFDDLKQRLVSTPILQSPNWNLPF 161
            L+K       D  K    +AF+ LK  ++  PILQ P++   F
Sbjct: 468 CLKKRTKI---DTQKLEYIEAFEKLKALIIRDPILQLPDFEKKF 508

BLAST of Cmc12g0323601 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.5e-16
Identity = 52/169 (30.77%), Postives = 86/169 (50.89%), Query Frame = 0

Query: 4   IFSDFIEKCIKVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGIVL 63
           +  + I K   V++DD  ++ ++    +  ++ +L   I+ N+ ++ EK  F       L
Sbjct: 327 VLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYL 386

Query: 64  GHLVSSKGIKVDKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKAFSKIALPLTNLLQ 123
           G +VS  G K D  K+  IQ+   P C+  VRSFLG   +YR FIK F+ IA P+T++L+
Sbjct: 387 GFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILK 446

Query: 124 -----------KDVPFLIDDNCKKAFDDLKQRLVSTP-ILQSPNWNLPF 161
                      K +P   ++  + AF  L+  L S   IL+ P++  PF
Sbjct: 447 GENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPF 495

BLAST of Cmc12g0323601 vs. ExPASy TrEMBL
Match: A0A151QKV4 (Retrovirus-related Pol polyprotein from transposon 17.6 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_049680 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 3.0e-63
Identity = 114/160 (71.25%), Postives = 139/160 (86.88%), Query Frame = 0

Query: 1   MMSIFSDFIEKCIKVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHG 60
           M+SIFSDF+E CI+VFMDDFTVYG SFDACL SL+ +LNRCIETNLVLN+EKCHFMV  G
Sbjct: 33  MLSIFSDFLENCIEVFMDDFTVYGSSFDACLDSLDRVLNRCIETNLVLNFEKCHFMVEQG 92

Query: 61  IVLGHLVSSKGIKVDKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKAFSKIALPLTN 120
           IVLGH++SSKGI+VD AK+ VI +L YP+C+++VRSFLG  GFYRRF+K FSK ALPL+N
Sbjct: 93  IVLGHIISSKGIEVDPAKVSVISQLPYPSCVREVRSFLGHAGFYRRFVKEFSKKALPLSN 152

Query: 121 LLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF 161
           LLQKDV F+ DD CK+AFD LK+ L +TPI+Q+P+W +PF
Sbjct: 153 LLQKDVDFVFDDRCKQAFDCLKEALTTTPIIQAPDWTVPF 192

BLAST of Cmc12g0323601 vs. ExPASy TrEMBL
Match: A0A151QZW2 (Transposon Ty3-G Gag-Pol polyprotein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_043040 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.5e-62
Identity = 113/160 (70.62%), Postives = 138/160 (86.25%), Query Frame = 0

Query: 1   MMSIFSDFIEKCIKVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHG 60
           M+SIFSDF+E CI++FMDDFTVYG SFDACL SL+  LNRCIETNLVLN+EKCHFMV  G
Sbjct: 495 MLSIFSDFLENCIELFMDDFTVYGSSFDACLDSLDRFLNRCIETNLVLNFEKCHFMVEQG 554

Query: 61  IVLGHLVSSKGIKVDKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKAFSKIALPLTN 120
           IVLGH++SSKGI+VD AK+ VI +L YP+C+++VRSFLG  GFYRRF+K FSK ALPL+N
Sbjct: 555 IVLGHIISSKGIEVDPAKVSVISQLPYPSCVREVRSFLGHAGFYRRFVKEFSKKALPLSN 614

Query: 121 LLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF 161
           LLQKDV F+ DD CK+AFD LK+ L +TPI+Q+P+W +PF
Sbjct: 615 LLQKDVDFVFDDRCKQAFDCLKEALTTTPIIQAPDWTVPF 654

BLAST of Cmc12g0323601 vs. ExPASy TrEMBL
Match: A0A151RP23 (Transposon Ty3-G Gag-Pol polyprotein OS=Cajanus cajan OX=3821 GN=KK1_034182 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 7.5e-62
Identity = 112/160 (70.00%), Postives = 139/160 (86.88%), Query Frame = 0

Query: 1   MMSIFSDFIEKCIKVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHG 60
           M+SIFSDF+E CI+VFMDDFTVYG SFDACL SL+ +LNRCIETNLVLN+EKCHFMV  G
Sbjct: 1   MLSIFSDFLENCIEVFMDDFTVYGSSFDACLDSLDRVLNRCIETNLVLNFEKCHFMVEQG 60

Query: 61  IVLGHLVSSKGIKVDKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKAFSKIALPLTN 120
           IVLG+++SSKGI+VD AK+ VI +L YP+C+++VRSFLG  GFYRRF++ FSK ALPL+N
Sbjct: 61  IVLGNIISSKGIEVDLAKVSVISQLPYPSCMREVRSFLGHAGFYRRFVEEFSKKALPLSN 120

Query: 121 LLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF 161
           LLQKDV F+ DD CK+AFD LK+ L +TPI+Q+P+W +PF
Sbjct: 121 LLQKDVDFVFDDKCKQAFDCLKKALTTTPIIQAPDWTVPF 160

BLAST of Cmc12g0323601 vs. ExPASy TrEMBL
Match: A0A151SJM9 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cajanus cajan OX=3821 GN=KK1_001230 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 9.7e-62
Identity = 114/160 (71.25%), Postives = 137/160 (85.62%), Query Frame = 0

Query: 1   MMSIFSDFIEKCIKVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHG 60
           M+SIFSDF+E CIKVFMDDFTVYG SFDACL SL+ +LNRCIETNLVLN+EKCHFMV  G
Sbjct: 62  MLSIFSDFLENCIKVFMDDFTVYGSSFDACLNSLDRVLNRCIETNLVLNFEKCHFMVEQG 121

Query: 61  IVLGHLVSSKGIKVDKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKAFSKIALPLTN 120
           IVLGH++SS+GI+VD AKI VI +L YP+C+++VRSFLG  GFYRRFIK FSK ALPL++
Sbjct: 122 IVLGHIISSRGIQVDPAKISVIAQLPYPSCVREVRSFLGHAGFYRRFIKDFSKKALPLSS 181

Query: 121 LLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF 161
           LLQKD+ F  DD CK+AFD LK  L +TPI+Q+P+W +PF
Sbjct: 182 LLQKDIEFDFDDRCKEAFDCLKTALTTTPIIQAPDWTVPF 221

BLAST of Cmc12g0323601 vs. ExPASy TrEMBL
Match: A0A151RB09 (Transposon Ty3-G Gag-Pol polyprotein OS=Cajanus cajan OX=3821 GN=KK1_039006 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.3e-61
Identity = 111/160 (69.38%), Postives = 138/160 (86.25%), Query Frame = 0

Query: 1   MMSIFSDFIEKCIKVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHG 60
           M+SIFSDF+E CI+VFMDDFTV G SFDACL SL+ +LNRCIETNL+LN+EKCHFMV  G
Sbjct: 168 MLSIFSDFLENCIEVFMDDFTVNGCSFDACLDSLDRVLNRCIETNLILNFEKCHFMVEQG 227

Query: 61  IVLGHLVSSKGIKVDKAKIDVIQKLSYPTCLKDVRSFLGTVGFYRRFIKAFSKIALPLTN 120
           I+LGH++SSKGI+VD AK+ VI +L YP+C+++VRSFLG  GFYRRF+K FSK ALPL+N
Sbjct: 228 IILGHIISSKGIEVDPAKVSVISQLPYPSCVREVRSFLGHAGFYRRFVKEFSKKALPLSN 287

Query: 121 LLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNLPF 161
           LLQKDV F+ DD CK+AFD LK+ L +TPI+Q+P+W +PF
Sbjct: 288 LLQKDVDFVFDDRCKQAFDCLKEALTTTPIIQAPDWTVPF 327

BLAST of Cmc12g0323601 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-13
Identity = 43/129 (33.33%), Postives = 66/129 (51.16%), Query Frame = 0

Query: 34  LELILNRCIETNLVLNYEKCHFMVSHGIVLG--HLVSSKGIKVDKAKIDVIQKLSYPTCL 93
           L ++L    +     N +KC F       LG  H++S +G+  D AK++ +     P   
Sbjct: 4   LGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNT 63

Query: 94  KDVRSFLGTVGFYRRFIKAFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPIL 153
            ++R FLG  G+YRRF+K + KI  PLT LL+K+      +    AF  LK  + + P+L
Sbjct: 64  TELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPVL 123

Query: 154 QSPNWNLPF 161
             P+  LPF
Sbjct: 124 ALPDLKLPF 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KYP30916.16.3e-6371.25Retrovirus-related Pol polyprotein from transposon 17.6, partial [Cajanus cajan][more]
KYP35881.13.1e-6270.63Transposon Ty3-G Gag-Pol polyprotein, partial [Cajanus cajan][more]
KYP44321.11.5e-6170.00Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan][more]
KYP55026.12.0e-6171.25Retrovirus-related Pol polyprotein from transposon 17.6 [Cajanus cajan][more]
XP_020202854.12.6e-6169.38uncharacterized protein LOC109788523, partial [Cajanus cajan][more]
Match NameE-valueIdentityDescription
Q8I7P92.3e-2334.52Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
P043237.3e-2235.40Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
P103941.2e-2138.51Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste... [more]
P208252.3e-2033.54Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
P104013.5e-1630.77Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas... [more]
Match NameE-valueIdentityDescription
A0A151QKV43.0e-6371.25Retrovirus-related Pol polyprotein from transposon 17.6 (Fragment) OS=Cajanus ca... [more]
A0A151QZW21.5e-6270.63Transposon Ty3-G Gag-Pol polyprotein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_... [more]
A0A151RP237.5e-6270.00Transposon Ty3-G Gag-Pol polyprotein OS=Cajanus cajan OX=3821 GN=KK1_034182 PE=4... [more]
A0A151SJM99.7e-6271.25Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cajanus cajan OX=3821... [more]
A0A151RB091.3e-6169.38Transposon Ty3-G Gag-Pol polyprotein OS=Cajanus cajan OX=3821 GN=KK1_039006 PE=4... [more]
Match NameE-valueIdentityDescription
ATMG00860.11.3e-1333.33DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 76..157
e-value: 5.3E-26
score: 92.4
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 1..74
e-value: 3.4E-19
score: 71.4
NoneNo IPR availablePANTHERPTHR24559:SF363SUBFAMILY NOT NAMEDcoord: 15..160
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 15..160
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 1..160

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc12g0323601.1Cmc12g0323601.1mRNA