Cmc12g0323261 (gene) Melon (Charmono) v1.1

Overview
NameCmc12g0323261
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
LocationCMiso1.1chr12: 12000752 .. 12001675 (-)
RNA-Seq ExpressionCmc12g0323261
SyntenyCmc12g0323261
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCCAACACATGTAGTCAAAAATCATCCCCCTAGCTCTTTAATTGGAGATATTCACAGTGGCATCACTACTGGAAGGAAGGAAAGAAGAGATTACGCAAAGATGGTTGCTAATGTATACTATACGTCAACCATGGAACCAACAACTGTTGTCGCTGCTCTTACTGATGAACACTGGATCTTAGCCATTCAGGAGGATTTACTACAGTTTGAAAGAAATCAGGTATGGAATCTTGTGCCTAAACCACCACACGTAAACATAATTGGTACTAAATGGATCTTCAAGAACAAAATTGATGAACAAGGAAGACTTATTAGAAATAAGACAAGGCTGGTTGCTCAGGGGTATTCGCAGATTGAAGGACTAGATTTTGGTGAAACATTTGCACCAACAGCCAGATTAGAAGCTATCCGGTTAATTTTGAGTTTTACCTGTTTTCGAGGGTTCAAACTATTTCAGATGGACGTAAAGAGTGTTTTTCTGAATGGGTATTTATCTGAAGAAGTATATGTGGCTCAGCCAAAAGGTTTTGTTGATCATGTTCATCATGATCATGTGTATAAGCTGCGGAAGGCACTGTATGGTCTTAAACAAGCTCCTAGAGCCTGGTATGAGCGACTCTCCACATATCTGGTACAGCAAGGGTATCGAAAAGGAAGTGCAGATCAAAAGATGTTCATGTATAGACAAGACTCTGAATTTCTGATTGTGCAGATCTACATTAATGACATTATATTTGGTGAAACTTCCTCTGCTTATGTTGAAAAGTTTGTTAGTCAAATGAAGGGCGAATTTGAAATGAGCATGGTTGGTGAGCTGACATTTTTTCTTGGATTTCAAATTAAACAAGAAGATACTGACATTTGCTTTTTTTTAGGAGAAATATGCAAAGAATCTCATCTCCAAGTCTGGAATGGATAA

mRNA sequence

ATGCCTCCAACACATGTAGTCAAAAATCATCCCCCTAGCTCTTTAATTGGAGATATTCACAGTGGCATCACTACTGGAAGGAAGGAAAGAAGAGATTACGCAAAGATGGTTGCTAATGTATACTATACGTCAACCATGGAACCAACAACTGTTGTCGCTGCTCTTACTGATGAACACTGGATCTTAGCCATTCAGGAGGATTTACTACAGTTTGAAAGAAATCAGGTATGGAATCTTGTGCCTAAACCACCACACGTAAACATAATTGGTACTAAATGGATCTTCAAGAACAAAATTGATGAACAAGGAAGACTTATTAGAAATAAGACAAGGCTGGTTGCTCAGGGGTATTCGCAGATTGAAGGACTAGATTTTGGTGAAACATTTGCACCAACAGCCAGATTAGAAGCTATCCGGTTAATTTTGAGTTTTACCTGTTTTCGAGGGTTCAAACTATTTCAGATGGACGTAAAGAGTGTTTTTCTGAATGGGTATTTATCTGAAGAAGTATATGTGGCTCAGCCAAAAGGTTTTGTTGATCATGTTCATCATGATCATGTGTATAAGCTGCGGAAGGCACTGTATGGTCTTAAACAAGCTCCTAGAGCCTGGTATGAGCGACTCTCCACATATCTGGTACAGCAAGGGTATCGAAAAGGAAGTGCAGATCAAAAGATGTTCATGTATAGACAAGACTCTGAATTTCTGATTGTGCAGATCTACATTAATGACATTATATTTGGTGAAACTTCCTCTGCTTATGTTGAAAAGTTTGTTAGTCAAATGAAGGGCGAATTTGAAATGAGCATGGTTGGTGAGCTGACATTTTTTCTTGGATTTCAAATTAAACAAGAAGATACTGACATTTGCTTTTTTTTAGGAGAAATATGCAAAGAATCTCATCTCCAAGTCTGGAATGGATAA

Coding sequence (CDS)

ATGCCTCCAACACATGTAGTCAAAAATCATCCCCCTAGCTCTTTAATTGGAGATATTCACAGTGGCATCACTACTGGAAGGAAGGAAAGAAGAGATTACGCAAAGATGGTTGCTAATGTATACTATACGTCAACCATGGAACCAACAACTGTTGTCGCTGCTCTTACTGATGAACACTGGATCTTAGCCATTCAGGAGGATTTACTACAGTTTGAAAGAAATCAGGTATGGAATCTTGTGCCTAAACCACCACACGTAAACATAATTGGTACTAAATGGATCTTCAAGAACAAAATTGATGAACAAGGAAGACTTATTAGAAATAAGACAAGGCTGGTTGCTCAGGGGTATTCGCAGATTGAAGGACTAGATTTTGGTGAAACATTTGCACCAACAGCCAGATTAGAAGCTATCCGGTTAATTTTGAGTTTTACCTGTTTTCGAGGGTTCAAACTATTTCAGATGGACGTAAAGAGTGTTTTTCTGAATGGGTATTTATCTGAAGAAGTATATGTGGCTCAGCCAAAAGGTTTTGTTGATCATGTTCATCATGATCATGTGTATAAGCTGCGGAAGGCACTGTATGGTCTTAAACAAGCTCCTAGAGCCTGGTATGAGCGACTCTCCACATATCTGGTACAGCAAGGGTATCGAAAAGGAAGTGCAGATCAAAAGATGTTCATGTATAGACAAGACTCTGAATTTCTGATTGTGCAGATCTACATTAATGACATTATATTTGGTGAAACTTCCTCTGCTTATGTTGAAAAGTTTGTTAGTCAAATGAAGGGCGAATTTGAAATGAGCATGGTTGGTGAGCTGACATTTTTTCTTGGATTTCAAATTAAACAAGAAGATACTGACATTTGCTTTTTTTTAGGAGAAATATGCAAAGAATCTCATCTCCAAGTCTGGAATGGATAA

Protein sequence

MPPTHVVKNHPPSSLIGDIHSGITTGRKERRDYAKMVANVYYTSTMEPTTVVAALTDEHWILAIQEDLLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRLIRNKTRLVAQGYSQIEGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGYLSEEVYVAQPKGFVDHVHHDHVYKLRKALYGLKQAPRAWYERLSTYLVQQGYRKGSADQKMFMYRQDSEFLIVQIYINDIIFGETSSAYVEKFVSQMKGEFEMSMVGELTFFLGFQIKQEDTDICFFLGEICKESHLQVWNG
Homology
BLAST of Cmc12g0323261 vs. NCBI nr
Match: KAA0035460.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 510.0 bits (1312), Expect = 1.4e-140
Identity = 248/252 (98.41%), Postives = 251/252 (99.60%), Query Frame = 0

Query: 1   MPPTHVVKNHPPSSLIGDIHSGITTGRKERRDYAKMVANVYYTSTMEPTTVVAALTDEHW 60
           MPPTHVVKNHPPSSLIGDIHSGITTGRKERRDYAKMVANVYYTSTMEPTTV AALTDEHW
Sbjct: 1   MPPTHVVKNHPPSSLIGDIHSGITTGRKERRDYAKMVANVYYTSTMEPTTVAAALTDEHW 60

Query: 61  ILAIQEDLLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRLIRNKTRLVAQGYSQI 120
           ILAIQE+LLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRLIRNKTRLVAQGYSQI
Sbjct: 61  ILAIQEELLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRLIRNKTRLVAQGYSQI 120

Query: 121 EGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGYLSEEVYVAQPKGFVD 180
           +GLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGYLSEEVYVAQPKGFVD
Sbjct: 121 KGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGYLSEEVYVAQPKGFVD 180

Query: 181 HVHHDHVYKLRKALYGLKQAPRAWYERLSTYLVQQGYRKGSADQKMFMYRQDSEFLIVQI 240
           HVHHDHVYKLRKALYGLKQAPRAWYERLSTYLVQQGYRKGSADQKMFMYRQDSEFLIVQI
Sbjct: 181 HVHHDHVYKLRKALYGLKQAPRAWYERLSTYLVQQGYRKGSADQKMFMYRQDSEFLIVQI 240

Query: 241 YINDIIFGETSS 253
           YINDIIFGETS+
Sbjct: 241 YINDIIFGETSN 252

BLAST of Cmc12g0323261 vs. NCBI nr
Match: TYK31065.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 510.0 bits (1312), Expect = 1.4e-140
Identity = 248/252 (98.41%), Postives = 251/252 (99.60%), Query Frame = 0

Query: 1   MPPTHVVKNHPPSSLIGDIHSGITTGRKERRDYAKMVANVYYTSTMEPTTVVAALTDEHW 60
           MPPTHVVKNHPPSSLIGDIHSGITTGRKERRDYAKMVANVYYTSTMEPTTV AALTDEHW
Sbjct: 1   MPPTHVVKNHPPSSLIGDIHSGITTGRKERRDYAKMVANVYYTSTMEPTTVAAALTDEHW 60

Query: 61  ILAIQEDLLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRLIRNKTRLVAQGYSQI 120
           ILAIQE+LLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRLIRNKTRLVAQGYSQI
Sbjct: 61  ILAIQEELLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRLIRNKTRLVAQGYSQI 120

Query: 121 EGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGYLSEEVYVAQPKGFVD 180
           +GLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGYLSEEVYVAQPKGFVD
Sbjct: 121 KGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGYLSEEVYVAQPKGFVD 180

Query: 181 HVHHDHVYKLRKALYGLKQAPRAWYERLSTYLVQQGYRKGSADQKMFMYRQDSEFLIVQI 240
           HVHHDHVYKLRKALYGLKQAPRAWYERLSTYLVQQGYRKGSADQKMFMYRQDSEFLIVQI
Sbjct: 181 HVHHDHVYKLRKALYGLKQAPRAWYERLSTYLVQQGYRKGSADQKMFMYRQDSEFLIVQI 240

Query: 241 YINDIIFGETSS 253
           YINDIIFGETS+
Sbjct: 241 YINDIIFGETSN 252

BLAST of Cmc12g0323261 vs. NCBI nr
Match: KAA0059225.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 421.4 bits (1082), Expect = 6.7e-114
Identity = 203/251 (80.88%), Postives = 223/251 (88.84%), Query Frame = 0

Query: 1    MPPTHVVKNHPPSSLIGDIHSGITTGRKERRDYAKMVANVYYTSTMEPTTVVAALTDEHW 60
            +PPTH  KNHP S +I DIHSGI T +KER+DYAKMVANV YTS +EPTTV AAL+DEHW
Sbjct: 942  IPPTHTAKNHPSSFIIRDIHSGIITRKKERKDYAKMVANVCYTSLLEPTTVSAALSDEHW 1001

Query: 61   ILAIQEDLLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRLIRNKTRLVAQGYSQI 120
            IL IQE+LLQFERNQVW LVPKPP+ NIIGTKWIFKNK DE+GR+IRNK RLVAQGYSQI
Sbjct: 1002 ILTIQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARLVAQGYSQI 1061

Query: 121  EGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGYLSEEVYVAQPKGFVD 180
            EGLDFGETFAP ARLEAIRL+LS+ CF  FKLFQMDVKS FLNGYL EEVYVAQPKGFVD
Sbjct: 1062 EGLDFGETFAPVARLEAIRLLLSYACFWRFKLFQMDVKSAFLNGYLCEEVYVAQPKGFVD 1121

Query: 181  HVHHDHVYKLRKALYGLKQAPRAWYERLSTYLVQQGYRKGSADQKMFMYRQDSEFLIVQI 240
             VH DHVYKLRKALY LKQAPRAWYERLSTYL+QQGY++GSADQ MF+YRQ + FLIVQI
Sbjct: 1122 PVHEDHVYKLRKALYRLKQAPRAWYERLSTYLLQQGYQRGSADQTMFIYRQGTNFLIVQI 1181

Query: 241  YINDIIFGETS 252
            Y++ IIFG+TS
Sbjct: 1182 YVDGIIFGDTS 1192

BLAST of Cmc12g0323261 vs. NCBI nr
Match: KAA0043008.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 417.9 bits (1073), Expect = 7.4e-113
Identity = 209/291 (71.82%), Postives = 234/291 (80.41%), Query Frame = 0

Query: 1   MPPTHVVKNHPPSSLIGDIHSGITTGRKERRDYAKMVANVYYTSTMEPTTVVAALTDEHW 60
           +PPTH+ KNHP S + GDIHSGI T +KER+DYAKMVANV YTS++EPTTV A L+DEHW
Sbjct: 144 IPPTHIAKNHPSSFINGDIHSGIITRKKERKDYAKMVANVCYTSSLEPTTVSAVLSDEHW 203

Query: 61  ILAIQEDLLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRLIRNKTRLVAQGYSQI 120
           ILA+QE+LLQFERNQVW LVPKPP+ NIIGTKWIFKNK DE+                  
Sbjct: 204 ILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEE------------------ 263

Query: 121 EGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGYLSEEVYVAQPKGFVD 180
                       ARLEAIRL+LS+TCFR FKLFQMDVKS FLNGYLSEEVYVAQPKGFVD
Sbjct: 264 -----------VARLEAIRLLLSYTCFRRFKLFQMDVKSAFLNGYLSEEVYVAQPKGFVD 323

Query: 181 HVHHDHVYKLRKALYGLKQAPRAWYERLSTYLVQQGYRKGSADQKMFMYRQDSEFLIVQI 240
             H DHVYKLRKALY LKQAPRAWYERLSTYL+QQ Y +GSADQ MF+YRQ ++FLIVQI
Sbjct: 324 PTHQDHVYKLRKALYRLKQAPRAWYERLSTYLLQQEYHRGSADQTMFIYRQGTDFLIVQI 383

Query: 241 YINDIIFGETSSAYVEKFVSQMKGEFEMSMVGELTFFLGFQIKQEDTDICF 292
           Y++DIIFG TSS YVE+FV+QMKGEF+MSMVGELTFFLGFQI QE+T I F
Sbjct: 384 YVDDIIFGGTSSVYVEQFVAQMKGEFKMSMVGELTFFLGFQINQENTGIFF 405

BLAST of Cmc12g0323261 vs. NCBI nr
Match: KAA0063048.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 389.0 bits (998), Expect = 3.7e-104
Identity = 201/291 (69.07%), Postives = 223/291 (76.63%), Query Frame = 0

Query: 1   MPPTHVVKNHPPSSLIGDIHSGITTGRKERRDYAKMVANVYYTSTMEPTTVVAALTDEHW 60
           MPPTH+ KNH  S++IGDI SGITT +KE RDYAKMV NV YTST+E TTV  ALTDEHW
Sbjct: 1   MPPTHIAKNHLSSTIIGDIQSGITTRKKEMRDYAKMVVNVCYTSTLELTTVTVALTDEHW 60

Query: 61  ILAIQEDLLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRLIRNKTRLVAQGYSQI 120
           ILA+QE+LLQFERN                                        QGYSQI
Sbjct: 61  ILAMQEELLQFERN----------------------------------------QGYSQI 120

Query: 121 EGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGYLSEEVYVAQPKGFVD 180
           EGLDFGETFA  +RL+ IRL++S+ CFR FKLFQMDVKS FLNGYLS EVYV QPKGFVD
Sbjct: 121 EGLDFGETFALVSRLKEIRLLMSYACFRRFKLFQMDVKSAFLNGYLSAEVYVVQPKGFVD 180

Query: 181 HVHHDHVYKLRKALYGLKQAPRAWYERLSTYLVQQGYRKGSADQKMFMYRQDSEFLIVQI 240
            VHHDHVYKLRKALYGLKQA RAWYERLSTYL+QQGYR+GSADQ MF+YRQ +EFLIVQI
Sbjct: 181 SVHHDHVYKLRKALYGLKQALRAWYERLSTYLLQQGYRRGSADQTMFIYRQGTEFLIVQI 240

Query: 241 YINDIIFGETSSAYVEKFVSQMKGEFEMSMVGELTFFLGFQIKQEDTDICF 292
           Y++DIIFG TSSAYV++FV QMK EFEMSMVGEL+FFLGFQIKQE+T I F
Sbjct: 241 YVDDIIFGGTSSAYVKQFVEQMKEEFEMSMVGELSFFLGFQIKQEETGIFF 251

BLAST of Cmc12g0323261 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.5e-47
Identity = 95/244 (38.93%), Postives = 144/244 (59.02%), Query Frame = 0

Query: 47   EPTTVVAALTDEHWILAIQEDLLQFERNQVWNLVPKPP-HVNIIGTKWIFKNKIDEQGRL 106
            EP T + AL DE W  A+  ++     N  W+LVP PP HV I+G +WIF  K +  G L
Sbjct: 955  EPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSL 1014

Query: 107  IRNKTRLVAQGYSQIEGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGY 166
             R K RLVA+GY+Q  GLD+ ETF+P  +  +IR++L     R + + Q+DV + FL G 
Sbjct: 1015 NRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGT 1074

Query: 167  LSEEVYVAQPKGFVDHVHHDHVYKLRKALYGLKQAPRAWYERLSTYLVQQGYRKGSADQK 226
            L+++VY++QP GF+D    ++V KLRKALYGLKQAPRAWY  L  YL+  G+    +D  
Sbjct: 1075 LTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTS 1134

Query: 227  MFMYRQDSEFLIVQIYINDIIFGETSSAYVEKFVSQMKGEFEMSMVGELTFFLGFQIKQE 286
            +F+ ++    + + +Y++DI+        +   +  +   F +    EL +FLG + K+ 
Sbjct: 1135 LFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRV 1194

Query: 287  DTDI 290
             T +
Sbjct: 1195 PTGL 1198

BLAST of Cmc12g0323261 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 9.6e-47
Identity = 92/239 (38.49%), Postives = 144/239 (60.25%), Query Frame = 0

Query: 47   EPTTVVAALTDEHWILAIQEDLLQFERNQVWNLV-PKPPHVNIIGTKWIFKNKIDEQGRL 106
            EP T + A+ D+ W  A+  ++     N  W+LV P PP V I+G +WIF  K +  G L
Sbjct: 938  EPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSL 997

Query: 107  IRNKTRLVAQGYSQIEGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGY 166
             R K RLVA+GY+Q  GLD+ ETF+P  +  +IR++L     R + + Q+DV + FL G 
Sbjct: 998  NRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGT 1057

Query: 167  LSEEVYVAQPKGFVDHVHHDHVYKLRKALYGLKQAPRAWYERLSTYLVQQGYRKGSADQK 226
            L++EVY++QP GFVD    D+V +LRKA+YGLKQAPRAWY  L TYL+  G+    +D  
Sbjct: 1058 LTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTS 1117

Query: 227  MFMYRQDSEFLIVQIYINDIIFGETSSAYVEKFVSQMKGEFEMSMVGELTFFLGFQIKQ 285
            +F+ ++    + + +Y++DI+     +  ++  +  +   F +    +L +FLG + K+
Sbjct: 1118 LFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKR 1176

BLAST of Cmc12g0323261 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 154.8 bits (390), Expect = 1.5e-36
Identity = 81/232 (34.91%), Postives = 132/232 (56.90%), Query Frame = 0

Query: 60   WILAIQEDLLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRLIRNKTRLVAQGYSQ 119
            W  AI  +L   + N  W +  +P + NI+ ++W+F  K +E G  IR K RLVA+G++Q
Sbjct: 906  WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965

Query: 120  IEGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGYLSEEVYVAQPKGFV 179
               +D+ ETFAP AR+ + R ILS       K+ QMDVK+ FLNG L EE+Y+  P+G  
Sbjct: 966  KYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI- 1025

Query: 180  DHVHHDHVYKLRKALYGLKQAPRAWYERLSTYLVQQGYRKGSADQKMFMYRQD--SEFLI 239
               + D+V KL KA+YGLKQA R W+E     L +  +   S D+ +++  +   +E + 
Sbjct: 1026 -SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIY 1085

Query: 240  VQIYINDIIFGETSSAYVEKFVSQMKGEFEMSMVGELTFFLGFQIKQEDTDI 290
            V +Y++D++        +  F   +  +F M+ + E+  F+G +I+ ++  I
Sbjct: 1086 VLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKI 1135

BLAST of Cmc12g0323261 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.6e-36
Identity = 81/234 (34.62%), Postives = 132/234 (56.41%), Query Frame = 0

Query: 63   AIQEDLLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRLIRNKTRLVAQGYSQIEG 122
            A+QE++   ++N  + LV  P     +  KW+FK K D   +L+R K RLV +G+ Q +G
Sbjct: 829  AMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKG 888

Query: 123  LDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGYLSEEVYVAQPKGFVDHV 182
            +DF E F+P  ++ +IR ILS       ++ Q+DVK+ FL+G L EE+Y+ QP+GF    
Sbjct: 889  IDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAG 948

Query: 183  HHDHVYKLRKALYGLKQAPRAWYERLSTYLVQQGYRKGSADQKMFMYR-QDSEFLIVQIY 242
                V KL K+LYGLKQAPR WY +  +++  Q Y K  +D  ++  R  ++ F+I+ +Y
Sbjct: 949  KKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLY 1008

Query: 243  INDIIFGETSSAYVEKFVSQMKGEFEMSMVGELTFFLGFQIKQEDTDICFFLGE 296
            ++D++        + K    +   F+M  +G     LG +I +E T    +L +
Sbjct: 1009 VDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQ 1062

BLAST of Cmc12g0323261 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.2e-19
Identity = 48/101 (47.52%), Postives = 63/101 (62.38%), Query Frame = 0

Query: 43  TSTMEPTTVVAALTDEHWILAIQEDLLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQ 102
           T   EP +V+ AL D  W  A+QE+L    RN+ W LVP P + NI+G KW+FK K+   
Sbjct: 23  TIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSD 82

Query: 103 GRLIRNKTRLVAQGYSQIEGLDFGETFAPTARLEAIRLILS 144
           G L R K RLVA+G+ Q EG+ F ET++P  R   IR IL+
Sbjct: 83  GTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILN 123

BLAST of Cmc12g0323261 vs. ExPASy TrEMBL
Match: A0A5A7SWP6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001070 PE=4 SV=1)

HSP 1 Score: 510.0 bits (1312), Expect = 6.9e-141
Identity = 248/252 (98.41%), Postives = 251/252 (99.60%), Query Frame = 0

Query: 1   MPPTHVVKNHPPSSLIGDIHSGITTGRKERRDYAKMVANVYYTSTMEPTTVVAALTDEHW 60
           MPPTHVVKNHPPSSLIGDIHSGITTGRKERRDYAKMVANVYYTSTMEPTTV AALTDEHW
Sbjct: 1   MPPTHVVKNHPPSSLIGDIHSGITTGRKERRDYAKMVANVYYTSTMEPTTVAAALTDEHW 60

Query: 61  ILAIQEDLLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRLIRNKTRLVAQGYSQI 120
           ILAIQE+LLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRLIRNKTRLVAQGYSQI
Sbjct: 61  ILAIQEELLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRLIRNKTRLVAQGYSQI 120

Query: 121 EGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGYLSEEVYVAQPKGFVD 180
           +GLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGYLSEEVYVAQPKGFVD
Sbjct: 121 KGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGYLSEEVYVAQPKGFVD 180

Query: 181 HVHHDHVYKLRKALYGLKQAPRAWYERLSTYLVQQGYRKGSADQKMFMYRQDSEFLIVQI 240
           HVHHDHVYKLRKALYGLKQAPRAWYERLSTYLVQQGYRKGSADQKMFMYRQDSEFLIVQI
Sbjct: 181 HVHHDHVYKLRKALYGLKQAPRAWYERLSTYLVQQGYRKGSADQKMFMYRQDSEFLIVQI 240

Query: 241 YINDIIFGETSS 253
           YINDIIFGETS+
Sbjct: 241 YINDIIFGETSN 252

BLAST of Cmc12g0323261 vs. ExPASy TrEMBL
Match: A0A5D3E6X3 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003230 PE=4 SV=1)

HSP 1 Score: 510.0 bits (1312), Expect = 6.9e-141
Identity = 248/252 (98.41%), Postives = 251/252 (99.60%), Query Frame = 0

Query: 1   MPPTHVVKNHPPSSLIGDIHSGITTGRKERRDYAKMVANVYYTSTMEPTTVVAALTDEHW 60
           MPPTHVVKNHPPSSLIGDIHSGITTGRKERRDYAKMVANVYYTSTMEPTTV AALTDEHW
Sbjct: 1   MPPTHVVKNHPPSSLIGDIHSGITTGRKERRDYAKMVANVYYTSTMEPTTVAAALTDEHW 60

Query: 61  ILAIQEDLLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRLIRNKTRLVAQGYSQI 120
           ILAIQE+LLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRLIRNKTRLVAQGYSQI
Sbjct: 61  ILAIQEELLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRLIRNKTRLVAQGYSQI 120

Query: 121 EGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGYLSEEVYVAQPKGFVD 180
           +GLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGYLSEEVYVAQPKGFVD
Sbjct: 121 KGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGYLSEEVYVAQPKGFVD 180

Query: 181 HVHHDHVYKLRKALYGLKQAPRAWYERLSTYLVQQGYRKGSADQKMFMYRQDSEFLIVQI 240
           HVHHDHVYKLRKALYGLKQAPRAWYERLSTYLVQQGYRKGSADQKMFMYRQDSEFLIVQI
Sbjct: 181 HVHHDHVYKLRKALYGLKQAPRAWYERLSTYLVQQGYRKGSADQKMFMYRQDSEFLIVQI 240

Query: 241 YINDIIFGETSS 253
           YINDIIFGETS+
Sbjct: 241 YINDIIFGETSN 252

BLAST of Cmc12g0323261 vs. ExPASy TrEMBL
Match: A0A5A7V046 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001550 PE=4 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 3.2e-114
Identity = 203/251 (80.88%), Postives = 223/251 (88.84%), Query Frame = 0

Query: 1    MPPTHVVKNHPPSSLIGDIHSGITTGRKERRDYAKMVANVYYTSTMEPTTVVAALTDEHW 60
            +PPTH  KNHP S +I DIHSGI T +KER+DYAKMVANV YTS +EPTTV AAL+DEHW
Sbjct: 942  IPPTHTAKNHPSSFIIRDIHSGIITRKKERKDYAKMVANVCYTSLLEPTTVSAALSDEHW 1001

Query: 61   ILAIQEDLLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRLIRNKTRLVAQGYSQI 120
            IL IQE+LLQFERNQVW LVPKPP+ NIIGTKWIFKNK DE+GR+IRNK RLVAQGYSQI
Sbjct: 1002 ILTIQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARLVAQGYSQI 1061

Query: 121  EGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGYLSEEVYVAQPKGFVD 180
            EGLDFGETFAP ARLEAIRL+LS+ CF  FKLFQMDVKS FLNGYL EEVYVAQPKGFVD
Sbjct: 1062 EGLDFGETFAPVARLEAIRLLLSYACFWRFKLFQMDVKSAFLNGYLCEEVYVAQPKGFVD 1121

Query: 181  HVHHDHVYKLRKALYGLKQAPRAWYERLSTYLVQQGYRKGSADQKMFMYRQDSEFLIVQI 240
             VH DHVYKLRKALY LKQAPRAWYERLSTYL+QQGY++GSADQ MF+YRQ + FLIVQI
Sbjct: 1122 PVHEDHVYKLRKALYRLKQAPRAWYERLSTYLLQQGYQRGSADQTMFIYRQGTNFLIVQI 1181

Query: 241  YINDIIFGETS 252
            Y++ IIFG+TS
Sbjct: 1182 YVDGIIFGDTS 1192

BLAST of Cmc12g0323261 vs. ExPASy TrEMBL
Match: A0A5A7TJM5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G00830 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 3.6e-113
Identity = 209/291 (71.82%), Postives = 234/291 (80.41%), Query Frame = 0

Query: 1   MPPTHVVKNHPPSSLIGDIHSGITTGRKERRDYAKMVANVYYTSTMEPTTVVAALTDEHW 60
           +PPTH+ KNHP S + GDIHSGI T +KER+DYAKMVANV YTS++EPTTV A L+DEHW
Sbjct: 144 IPPTHIAKNHPSSFINGDIHSGIITRKKERKDYAKMVANVCYTSSLEPTTVSAVLSDEHW 203

Query: 61  ILAIQEDLLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRLIRNKTRLVAQGYSQI 120
           ILA+QE+LLQFERNQVW LVPKPP+ NIIGTKWIFKNK DE+                  
Sbjct: 204 ILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEE------------------ 263

Query: 121 EGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGYLSEEVYVAQPKGFVD 180
                       ARLEAIRL+LS+TCFR FKLFQMDVKS FLNGYLSEEVYVAQPKGFVD
Sbjct: 264 -----------VARLEAIRLLLSYTCFRRFKLFQMDVKSAFLNGYLSEEVYVAQPKGFVD 323

Query: 181 HVHHDHVYKLRKALYGLKQAPRAWYERLSTYLVQQGYRKGSADQKMFMYRQDSEFLIVQI 240
             H DHVYKLRKALY LKQAPRAWYERLSTYL+QQ Y +GSADQ MF+YRQ ++FLIVQI
Sbjct: 324 PTHQDHVYKLRKALYRLKQAPRAWYERLSTYLLQQEYHRGSADQTMFIYRQGTDFLIVQI 383

Query: 241 YINDIIFGETSSAYVEKFVSQMKGEFEMSMVGELTFFLGFQIKQEDTDICF 292
           Y++DIIFG TSS YVE+FV+QMKGEF+MSMVGELTFFLGFQI QE+T I F
Sbjct: 384 YVDDIIFGGTSSVYVEQFVAQMKGEFKMSMVGELTFFLGFQINQENTGIFF 405

BLAST of Cmc12g0323261 vs. ExPASy TrEMBL
Match: A0A5A7V603 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001610 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 1.8e-104
Identity = 201/291 (69.07%), Postives = 223/291 (76.63%), Query Frame = 0

Query: 1   MPPTHVVKNHPPSSLIGDIHSGITTGRKERRDYAKMVANVYYTSTMEPTTVVAALTDEHW 60
           MPPTH+ KNH  S++IGDI SGITT +KE RDYAKMV NV YTST+E TTV  ALTDEHW
Sbjct: 1   MPPTHIAKNHLSSTIIGDIQSGITTRKKEMRDYAKMVVNVCYTSTLELTTVTVALTDEHW 60

Query: 61  ILAIQEDLLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRLIRNKTRLVAQGYSQI 120
           ILA+QE+LLQFERN                                        QGYSQI
Sbjct: 61  ILAMQEELLQFERN----------------------------------------QGYSQI 120

Query: 121 EGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGYLSEEVYVAQPKGFVD 180
           EGLDFGETFA  +RL+ IRL++S+ CFR FKLFQMDVKS FLNGYLS EVYV QPKGFVD
Sbjct: 121 EGLDFGETFALVSRLKEIRLLMSYACFRRFKLFQMDVKSAFLNGYLSAEVYVVQPKGFVD 180

Query: 181 HVHHDHVYKLRKALYGLKQAPRAWYERLSTYLVQQGYRKGSADQKMFMYRQDSEFLIVQI 240
            VHHDHVYKLRKALYGLKQA RAWYERLSTYL+QQGYR+GSADQ MF+YRQ +EFLIVQI
Sbjct: 181 SVHHDHVYKLRKALYGLKQALRAWYERLSTYLLQQGYRRGSADQTMFIYRQGTEFLIVQI 240

Query: 241 YINDIIFGETSSAYVEKFVSQMKGEFEMSMVGELTFFLGFQIKQEDTDICF 292
           Y++DIIFG TSSAYV++FV QMK EFEMSMVGEL+FFLGFQIKQE+T I F
Sbjct: 241 YVDDIIFGGTSSAYVKQFVEQMKEEFEMSMVGELSFFLGFQIKQEETGIFF 251

BLAST of Cmc12g0323261 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 169.5 bits (428), Expect = 4.3e-42
Identity = 89/247 (36.03%), Postives = 142/247 (57.49%), Query Frame = 0

Query: 47  EPTTVVAALTDEHWILAIQEDLLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRLI 106
           EP+T   A     W  A+ +++   E    W +   PP+   IG KW++K K +  G + 
Sbjct: 85  EPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIE 144

Query: 107 RNKTRLVAQGYSQIEGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGYL 166
           R K RLVA+GY+Q EG+DF ETF+P  +L +++LIL+ +    F L Q+D+ + FLNG L
Sbjct: 145 RYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDL 204

Query: 167 SEEVYVAQPKGFV----DHVHHDHVYKLRKALYGLKQAPRAWYERLSTYLVQQGYRKGSA 226
            EE+Y+  P G+     D +  + V  L+K++YGLKQA R W+ + S  L+  G+ +  +
Sbjct: 205 DEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHS 264

Query: 227 DQKMFMYRQDSEFLIVQIYINDIIFGETSSAYVEKFVSQMKGEFEMSMVGELTFFLGFQI 286
           D   F+    + FL V +Y++DII    + A V++  SQ+K  F++  +G L +FLG +I
Sbjct: 265 DHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEI 324

Query: 287 KQEDTDI 290
            +    I
Sbjct: 325 ARSAAGI 331

BLAST of Cmc12g0323261 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 97.8 bits (242), Expect = 1.6e-20
Identity = 48/101 (47.52%), Postives = 63/101 (62.38%), Query Frame = 0

Query: 43  TSTMEPTTVVAALTDEHWILAIQEDLLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQ 102
           T   EP +V+ AL D  W  A+QE+L    RN+ W LVP P + NI+G KW+FK K+   
Sbjct: 23  TIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSD 82

Query: 103 GRLIRNKTRLVAQGYSQIEGLDFGETFAPTARLEAIRLILS 144
           G L R K RLVA+G+ Q EG+ F ET++P  R   IR IL+
Sbjct: 83  GTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILN 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0035460.11.4e-14098.41gag-pol polyprotein [Cucumis melo var. makuwa][more]
TYK31065.11.4e-14098.41gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0059225.16.7e-11480.88gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0043008.17.4e-11371.82gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0063048.13.7e-10469.07gag-pol polyprotein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Q94HW21.5e-4738.93Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT949.6e-4738.49Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P041461.5e-3634.91Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P109782.6e-3634.62Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P925202.2e-1947.52Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A5A7SWP66.9e-14198.41Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G... [more]
A0A5D3E6X36.9e-14198.41Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G... [more]
A0A5A7V0463.2e-11480.88Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G... [more]
A0A5A7TJM53.6e-11371.82Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G0... [more]
A0A5A7V6031.8e-10469.07Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G... [more]
Match NameE-valueIdentityDescription
AT4G23160.14.3e-4236.03cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00820.11.6e-2047.52Reverse transcriptase (RNA-dependent DNA polymerase) [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 74..289
e-value: 1.8E-61
score: 207.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 64..282
NoneNo IPR availablePANTHERPTHR11439:SF351CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8coord: 64..282
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 73..284

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc12g0323261.1Cmc12g0323261.1mRNA