Cmc12g0322811 (gene) Melon (Charmono) v1.1

Overview
NameCmc12g0322811
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
LocationCMiso1.1chr12: 11132438 .. 11132935 (-)
RNA-Seq ExpressionCmc12g0322811
SyntenyCmc12g0322811
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTCTAAGATCGACCTTCAATCAGGATACCATCAGTTGAGAATTAAGGATAGTAATGAATTCATTGTGTTGTCCTTTGGTTTGACGAATGCTCCAACAGTATTTGCGGATTCGATGAACAGAGTGTTTAAGGAGTTCTTTGACACTTTGCGATTGTGTTTATTAACGATATCTTGGTATATTCCAAGACAGAGACAGAACATGAGGAGCATTTATGCATGGTTTCTAGAGACCATTCGAGCCAATAAATTTTATGCAAAGTTTTCCAAATGTGAGTTTTGGTTGAAGCAAATATCTTTTCTAGGCCATGTGGTTTCTAAAGATGGTGTTTTCATGGATCCAGCTAAGATAAGGGCTGTTACTAGTTGGCCTCGACCTTCCACAATCAGTGAAGTTCGTAGCTTTTTGGGTTTAGTAGGTTATTACCGTCGGTTTATGGAAAACGTTTCCCATATAGCTACTCTTCTTACTCAATTGACCAGGAAAGGAGCTTAG

mRNA sequence

ATGTTCTCTAAGATCGACCTTCAATCAGGATACCATCAGTTGAGAATTAAGGATAGTAATGAATTCATTGTGTTGTCCTTTGGTTTGACGAATGCTCCAACAGTATTTGCGGATTCGATGAACAGAGTGTTTAAGGAGTTCTTTGACACTTTGCGATTGTGTTTATTAACGATATCTTGGTATATTCCAAGACAGAGACAGAACATGAGGAGCATTTATGCATGGTTTCTAGAGACCATTCGAGCCAATAAATTTTATGCAAAGTTTTCCAAATGTGAGTTTTGGTTGAAGCAAATATCTTTTCTAGGCCATGTGGTTTCTAAAGATGGTGTTTTCATGGATCCAGCTAAGATAAGGGCTGTTACTAGTTGGCCTCGACCTTCCACAATCAGTGAAGTTCGTAGCTTTTTGGGTTTAGTAGGTTATTACCGTCGGTTTATGGAAAACGTTTCCCATATAGCTACTCTTCTTACTCAATTGACCAGGAAAGGAGCTTAG

Coding sequence (CDS)

ATGTTCTCTAAGATCGACCTTCAATCAGGATACCATCAGTTGAGAATTAAGGATAGTAATGAATTCATTGTGTTGTCCTTTGGTTTGACGAATGCTCCAACAGTATTTGCGGATTCGATGAACAGAGTGTTTAAGGAGTTCTTTGACACTTTGCGATTGTGTTTATTAACGATATCTTGGTATATTCCAAGACAGAGACAGAACATGAGGAGCATTTATGCATGGTTTCTAGAGACCATTCGAGCCAATAAATTTTATGCAAAGTTTTCCAAATGTGAGTTTTGGTTGAAGCAAATATCTTTTCTAGGCCATGTGGTTTCTAAAGATGGTGTTTTCATGGATCCAGCTAAGATAAGGGCTGTTACTAGTTGGCCTCGACCTTCCACAATCAGTGAAGTTCGTAGCTTTTTGGGTTTAGTAGGTTATTACCGTCGGTTTATGGAAAACGTTTCCCATATAGCTACTCTTCTTACTCAATTGACCAGGAAAGGAGCTTAG

Protein sequence

MFSKIDLQSGYHQLRIKDSNEFIVLSFGLTNAPTVFADSMNRVFKEFFDTLRLCLLTISWYIPRQRQNMRSIYAWFLETIRANKFYAKFSKCEFWLKQISFLGHVVSKDGVFMDPAKIRAVTSWPRPSTISEVRSFLGLVGYYRRFMENVSHIATLLTQLTRKGA
Homology
BLAST of Cmc12g0322811 vs. NCBI nr
Match: KAA0042118.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 224.2 bits (570), Expect = 8.4e-55
Identity = 114/178 (64.04%), Postives = 130/178 (73.03%), Query Frame = 0

Query: 1   MFSKIDLQSGYHQLRIKDSN-------------EFIVLSFGLTNAPTVFADSMNRVFKEF 60
           +FSKIDL+SGYHQLRIKD +             EFI++SFGLTNAPTVF D MNRVF+EF
Sbjct: 540 VFSKIDLRSGYHQLRIKDGDVPKTVFRSRYGHYEFIMISFGLTNAPTVFMDLMNRVFREF 599

Query: 61  FDTLRLCLLTISWYIPRQRQNMRSIYAWFLETIRANKFYAKFSKCEFWLKQISFLGHVVS 120
            DT  +  +       +            ++T+R NK YAKFSKCEFWLKQ+SFLGHVVS
Sbjct: 600 LDTFVIVFIDDILIFSKTEAEHEGHLRMVMQTLRDNKLYAKFSKCEFWLKQVSFLGHVVS 659

Query: 121 KDGVFMDPAKIRAVTSWPRPSTISEVRSFLGLVGYYRRFMENVSHIATLLTQLTRKGA 166
           K GV +DPAKI AVTSWPRPST+SEVRSFLGL GYYRRF+EN SHIAT LTQLTRKGA
Sbjct: 660 KAGVSVDPAKIDAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGA 717

BLAST of Cmc12g0322811 vs. NCBI nr
Match: TYK18061.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 224.2 bits (570), Expect = 8.4e-55
Identity = 114/178 (64.04%), Postives = 130/178 (73.03%), Query Frame = 0

Query: 1   MFSKIDLQSGYHQLRIKDSN-------------EFIVLSFGLTNAPTVFADSMNRVFKEF 60
           +FSKIDL+SGYHQLRIKD +             EFI++SFGLTNAPTVF D MNRVF+EF
Sbjct: 540 VFSKIDLRSGYHQLRIKDGDVPKTVFRSRYGHYEFIMISFGLTNAPTVFMDLMNRVFREF 599

Query: 61  FDTLRLCLLTISWYIPRQRQNMRSIYAWFLETIRANKFYAKFSKCEFWLKQISFLGHVVS 120
            DT  +  +       +            ++T+R NK YAKFSKCEFWLKQ+SFLGHVVS
Sbjct: 600 LDTFVIVFIDDILIFSKTEAEHEGHLRMVMQTLRDNKLYAKFSKCEFWLKQVSFLGHVVS 659

Query: 121 KDGVFMDPAKIRAVTSWPRPSTISEVRSFLGLVGYYRRFMENVSHIATLLTQLTRKGA 166
           K GV +DPAKI AVTSWPRPST+SEVRSFLGL GYYRRF+EN SHIAT LTQLTRKGA
Sbjct: 660 KAGVSVDPAKIDAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGA 717

BLAST of Cmc12g0322811 vs. NCBI nr
Match: KAA0049960.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK07691.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 222.6 bits (566), Expect = 2.5e-54
Identity = 115/178 (64.61%), Postives = 127/178 (71.35%), Query Frame = 0

Query: 1   MFSKIDLQSGYHQLRIKDSN-------------EFIVLSFGLTNAPTVFADSMNRVFKEF 60
           +FSKIDL+SGYHQLRIKD +             EFIV+SFGLTNAP VF D MNRVFKEF
Sbjct: 413 VFSKIDLRSGYHQLRIKDRDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKEF 472

Query: 61  FDTLRLCLLTISWYIPRQRQNMRSIYAWFLETIRANKFYAKFSKCEFWLKQISFLGHVVS 120
            DT  +  +       +            L+T R NK YAKFSKCEFWLKQ+SFLGHVVS
Sbjct: 473 LDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTFRDNKLYAKFSKCEFWLKQVSFLGHVVS 532

Query: 121 KDGVFMDPAKIRAVTSWPRPSTISEVRSFLGLVGYYRRFMENVSHIATLLTQLTRKGA 166
           K GVF+DPAKI A+TSWPRPSTISEVRSFLGL  YYRRF+EN S IAT LTQLTRKGA
Sbjct: 533 KAGVFVDPAKIEAITSWPRPSTISEVRSFLGLASYYRRFVENFSRIATSLTQLTRKGA 590

BLAST of Cmc12g0322811 vs. NCBI nr
Match: TYJ95917.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 222.6 bits (566), Expect = 2.5e-54
Identity = 116/178 (65.17%), Postives = 129/178 (72.47%), Query Frame = 0

Query: 1   MFSKIDLQSGYHQLRIKDSN-------------EFIVLSFGLTNAPTVFADSMNRVFKEF 60
           +FSKIDL+SGYHQLRIKD +             EFIV+SFGLTNAPTVF D MNRVF+EF
Sbjct: 421 VFSKIDLRSGYHQLRIKDGDVPKTAFRSKYGHYEFIVMSFGLTNAPTVFMDLMNRVFREF 480

Query: 61  FDTLRLCLLTISWYIPRQRQNMRSIYAWFLETIRANKFYAKFSKCEFWLKQISFLGHVVS 120
            DT  +  +       +            L+T+R NK YAKFSKCEFWLKQ+SFLGHVVS
Sbjct: 481 LDTFVIVFINDILIYYKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVS 540

Query: 121 KDGVFMDPAKIRAVTSWPRPSTISEVRSFLGLVGYYRRFMENVSHIATLLTQLTRKGA 166
           K GVF+D AKI AVTSW RPSTISEVRSFLGL GYYRRF+EN SHIAT LTQLTRKGA
Sbjct: 541 KAGVFVDLAKIEAVTSWTRPSTISEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGA 598

BLAST of Cmc12g0322811 vs. NCBI nr
Match: KAA0036853.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 222.6 bits (566), Expect = 2.5e-54
Identity = 116/178 (65.17%), Postives = 129/178 (72.47%), Query Frame = 0

Query: 1   MFSKIDLQSGYHQLRIKDSN-------------EFIVLSFGLTNAPTVFADSMNRVFKEF 60
           +FSKIDL+SGYHQLRIKD +             EFIV+SFGLTNAPTVF D MNRVF+EF
Sbjct: 421 VFSKIDLRSGYHQLRIKDGDVPKTAFRSKYGHYEFIVMSFGLTNAPTVFMDLMNRVFREF 480

Query: 61  FDTLRLCLLTISWYIPRQRQNMRSIYAWFLETIRANKFYAKFSKCEFWLKQISFLGHVVS 120
            DT  +  +       +            L+T+R NK YAKFSKCEFWLKQ+SFLGHVVS
Sbjct: 481 LDTFVIVFINDILIYYKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVS 540

Query: 121 KDGVFMDPAKIRAVTSWPRPSTISEVRSFLGLVGYYRRFMENVSHIATLLTQLTRKGA 166
           K GVF+D AKI AVTSW RPSTISEVRSFLGL GYYRRF+EN SHIAT LTQLTRKGA
Sbjct: 541 KAGVFVDLAKIEAVTSWTRPSTISEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGA 598

BLAST of Cmc12g0322811 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-22
Identity = 59/176 (33.52%), Postives = 95/176 (53.98%), Query Frame = 0

Query: 2   FSKIDLQSGYHQLRIKDSN-------------EFIVLSFGLTNAPTVFADSMNRVFKEFF 61
           F+ IDL  G+HQ+ + + +             E++ + FGL NAP  F   MN + +   
Sbjct: 297 FTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLL 356

Query: 62  DTLRLCLL-TISWYIPRQRQNMRSIYAWFLETIRANKFYAKFSKCEFWLKQISFLGHVVS 121
           +   L  L  I  +     +++ SI   F +   AN    +  KCEF  K+ +FLGH+V+
Sbjct: 357 NKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN-LKLQLDKCEFLKKEANFLGHIVT 416

Query: 122 KDGVFMDPAKIRAVTSWPRPSTISEVRSFLGLVGYYRRFMENVSHIATLLTQLTRK 164
            DG+  +P K++A+ S+P P+   E+R+FLGL GYYR+F+ N + IA  +T   +K
Sbjct: 417 PDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKK 471

BLAST of Cmc12g0322811 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.7e-21
Identity = 55/180 (30.56%), Postives = 97/180 (53.89%), Query Frame = 0

Query: 2   FSKIDLQSGYHQLRIKDSN-------------EFIVLSFGLTNAPTVFADSMNRVFKEFF 61
           F+ +DL SG+HQ+ +K+S+             EF+ L FGL NAP +F   ++ + +E  
Sbjct: 214 FTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHI 273

Query: 62  DTLRLC------LLTISWYIPRQRQNMRSIYAWFLETIRANKFYAKFSKCEFWLKQISFL 121
              ++C      ++  S       +N+R +    L ++          K  F   Q+ FL
Sbjct: 274 G--KVCYVYIDDIIVFSEDYDTHWKNLRLV----LASLSKANLQVNLEKSHFLDTQVEFL 333

Query: 122 GHVVSKDGVFMDPAKIRAVTSWPRPSTISEVRSFLGLVGYYRRFMENVSHIATLLTQLTR 163
           G++V+ DG+  DP K+RA++  P P+++ E++ FLG+  YYR+F+++ + +A  LT LTR
Sbjct: 334 GYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTR 387

BLAST of Cmc12g0322811 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.1e-20
Identity = 56/176 (31.82%), Postives = 95/176 (53.98%), Query Frame = 0

Query: 2   FSKIDLQSGYHQLRIKDSN-------------EFIVLSFGLTNAPTVFADSMNRVFKEFF 61
           F+ IDL  G+HQ+ +   +             E++ + FGL NAP  F   MN + +   
Sbjct: 298 FTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLL 357

Query: 62  DTLRLCLL-TISWYIPRQRQNMRSIYAWFLETIRANKFYAKFSKCEFWLKQISFLGHVVS 121
           +   L  L  I  +     ++++S+   F +  +AN    +  KCEF  ++ +FLGHV++
Sbjct: 358 NKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN-LKLQLDKCEFLKQETTFLGHVLT 417

Query: 122 KDGVFMDPAKIRAVTSWPRPSTISEVRSFLGLVGYYRRFMENVSHIATLLTQLTRK 164
            DG+  +P KI A+  +P P+   E+++FLGL GYYR+F+ N + IA  +T+  +K
Sbjct: 418 PDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKK 472

BLAST of Cmc12g0322811 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.0e-18
Identity = 55/177 (31.07%), Postives = 95/177 (53.67%), Query Frame = 0

Query: 2   FSKIDLQSGYHQLRIKDSN-------------EFIVLSFGLTNAPTVFADSMNRVFKEFF 61
           F+ +DL+SGYHQ+ + + +             EF  L FGL NA ++F  +++ V +E  
Sbjct: 273 FTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQI 332

Query: 62  DTLRLCLLTISWYI---PRQRQNMRSIYAWFLETIRANKFYAKFSKCEFWLKQISFLGHV 121
              ++C + +   I     +  ++R I       I AN   ++  K  F+ + + +LG +
Sbjct: 333 G--KICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQ-EKTRFFKESVEYLGFI 392

Query: 122 VSKDGVFMDPAKIRAVTSWPRPSTISEVRSFLGLVGYYRRFMENVSHIATLLTQLTR 163
           VSKDG   DP K++A+  +P P  + +VRSFLGL  YYR F+++ + IA  +T + +
Sbjct: 393 VSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILK 446

BLAST of Cmc12g0322811 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.6e-17
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 0

Query: 77  LETIRANKFYAKFSKCEFWLKQISFLG--HVVSKDGVFMDPAKIRAVTSWPRPSTISEVR 136
           L+    ++FYA   KC F   QI++LG  H++S +GV  DPAK+ A+  WP P   +E+R
Sbjct: 8   LQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELR 67

Query: 137 SFLGLVGYYRRFMENVSHIATLLTQLTRKGA 166
            FLGL GYYRRF++N   I   LT+L +K +
Sbjct: 68  GFLGLTGYYRRFVKNYGKIVRPLTELLKKNS 98

BLAST of Cmc12g0322811 vs. ExPASy TrEMBL
Match: A0A5A7TH12 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005960 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 4.1e-55
Identity = 114/178 (64.04%), Postives = 130/178 (73.03%), Query Frame = 0

Query: 1   MFSKIDLQSGYHQLRIKDSN-------------EFIVLSFGLTNAPTVFADSMNRVFKEF 60
           +FSKIDL+SGYHQLRIKD +             EFI++SFGLTNAPTVF D MNRVF+EF
Sbjct: 540 VFSKIDLRSGYHQLRIKDGDVPKTVFRSRYGHYEFIMISFGLTNAPTVFMDLMNRVFREF 599

Query: 61  FDTLRLCLLTISWYIPRQRQNMRSIYAWFLETIRANKFYAKFSKCEFWLKQISFLGHVVS 120
            DT  +  +       +            ++T+R NK YAKFSKCEFWLKQ+SFLGHVVS
Sbjct: 600 LDTFVIVFIDDILIFSKTEAEHEGHLRMVMQTLRDNKLYAKFSKCEFWLKQVSFLGHVVS 659

Query: 121 KDGVFMDPAKIRAVTSWPRPSTISEVRSFLGLVGYYRRFMENVSHIATLLTQLTRKGA 166
           K GV +DPAKI AVTSWPRPST+SEVRSFLGL GYYRRF+EN SHIAT LTQLTRKGA
Sbjct: 660 KAGVSVDPAKIDAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGA 717

BLAST of Cmc12g0322811 vs. ExPASy TrEMBL
Match: A0A5D3D1D7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003860 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 4.1e-55
Identity = 114/178 (64.04%), Postives = 130/178 (73.03%), Query Frame = 0

Query: 1   MFSKIDLQSGYHQLRIKDSN-------------EFIVLSFGLTNAPTVFADSMNRVFKEF 60
           +FSKIDL+SGYHQLRIKD +             EFI++SFGLTNAPTVF D MNRVF+EF
Sbjct: 540 VFSKIDLRSGYHQLRIKDGDVPKTVFRSRYGHYEFIMISFGLTNAPTVFMDLMNRVFREF 599

Query: 61  FDTLRLCLLTISWYIPRQRQNMRSIYAWFLETIRANKFYAKFSKCEFWLKQISFLGHVVS 120
            DT  +  +       +            ++T+R NK YAKFSKCEFWLKQ+SFLGHVVS
Sbjct: 600 LDTFVIVFIDDILIFSKTEAEHEGHLRMVMQTLRDNKLYAKFSKCEFWLKQVSFLGHVVS 659

Query: 121 KDGVFMDPAKIRAVTSWPRPSTISEVRSFLGLVGYYRRFMENVSHIATLLTQLTRKGA 166
           K GV +DPAKI AVTSWPRPST+SEVRSFLGL GYYRRF+EN SHIAT LTQLTRKGA
Sbjct: 660 KAGVSVDPAKIDAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGA 717

BLAST of Cmc12g0322811 vs. ExPASy TrEMBL
Match: A0A5A7U3V7 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G001070 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.2e-54
Identity = 115/178 (64.61%), Postives = 127/178 (71.35%), Query Frame = 0

Query: 1   MFSKIDLQSGYHQLRIKDSN-------------EFIVLSFGLTNAPTVFADSMNRVFKEF 60
           +FSKIDL+SGYHQLRIKD +             EFIV+SFGLTNAP VF D MNRVFKEF
Sbjct: 413 VFSKIDLRSGYHQLRIKDRDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKEF 472

Query: 61  FDTLRLCLLTISWYIPRQRQNMRSIYAWFLETIRANKFYAKFSKCEFWLKQISFLGHVVS 120
            DT  +  +       +            L+T R NK YAKFSKCEFWLKQ+SFLGHVVS
Sbjct: 473 LDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTFRDNKLYAKFSKCEFWLKQVSFLGHVVS 532

Query: 121 KDGVFMDPAKIRAVTSWPRPSTISEVRSFLGLVGYYRRFMENVSHIATLLTQLTRKGA 166
           K GVF+DPAKI A+TSWPRPSTISEVRSFLGL  YYRRF+EN S IAT LTQLTRKGA
Sbjct: 533 KAGVFVDPAKIEAITSWPRPSTISEVRSFLGLASYYRRFVENFSRIATSLTQLTRKGA 590

BLAST of Cmc12g0322811 vs. ExPASy TrEMBL
Match: A0A5A7T1Q1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001600 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.2e-54
Identity = 116/178 (65.17%), Postives = 129/178 (72.47%), Query Frame = 0

Query: 1   MFSKIDLQSGYHQLRIKDSN-------------EFIVLSFGLTNAPTVFADSMNRVFKEF 60
           +FSKIDL+SGYHQLRIKD +             EFIV+SFGLTNAPTVF D MNRVF+EF
Sbjct: 421 VFSKIDLRSGYHQLRIKDGDVPKTAFRSKYGHYEFIVMSFGLTNAPTVFMDLMNRVFREF 480

Query: 61  FDTLRLCLLTISWYIPRQRQNMRSIYAWFLETIRANKFYAKFSKCEFWLKQISFLGHVVS 120
            DT  +  +       +            L+T+R NK YAKFSKCEFWLKQ+SFLGHVVS
Sbjct: 481 LDTFVIVFINDILIYYKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVS 540

Query: 121 KDGVFMDPAKIRAVTSWPRPSTISEVRSFLGLVGYYRRFMENVSHIATLLTQLTRKGA 166
           K GVF+D AKI AVTSW RPSTISEVRSFLGL GYYRRF+EN SHIAT LTQLTRKGA
Sbjct: 541 KAGVFVDLAKIEAVTSWTRPSTISEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGA 598

BLAST of Cmc12g0322811 vs. ExPASy TrEMBL
Match: A0A5D3B9W4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002270 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.2e-54
Identity = 116/178 (65.17%), Postives = 129/178 (72.47%), Query Frame = 0

Query: 1   MFSKIDLQSGYHQLRIKDSN-------------EFIVLSFGLTNAPTVFADSMNRVFKEF 60
           +FSKIDL+SGYHQLRIKD +             EFIV+SFGLTNAPTVF D MNRVF+EF
Sbjct: 421 VFSKIDLRSGYHQLRIKDGDVPKTAFRSKYGHYEFIVMSFGLTNAPTVFMDLMNRVFREF 480

Query: 61  FDTLRLCLLTISWYIPRQRQNMRSIYAWFLETIRANKFYAKFSKCEFWLKQISFLGHVVS 120
            DT  +  +       +            L+T+R NK YAKFSKCEFWLKQ+SFLGHVVS
Sbjct: 481 LDTFVIVFINDILIYYKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVS 540

Query: 121 KDGVFMDPAKIRAVTSWPRPSTISEVRSFLGLVGYYRRFMENVSHIATLLTQLTRKGA 166
           K GVF+D AKI AVTSW RPSTISEVRSFLGL GYYRRF+EN SHIAT LTQLTRKGA
Sbjct: 541 KAGVFVDLAKIEAVTSWTRPSTISEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGA 598

BLAST of Cmc12g0322811 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 89.0 bits (219), Expect = 4.0e-18
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 0

Query: 77  LETIRANKFYAKFSKCEFWLKQISFLG--HVVSKDGVFMDPAKIRAVTSWPRPSTISEVR 136
           L+    ++FYA   KC F   QI++LG  H++S +GV  DPAK+ A+  WP P   +E+R
Sbjct: 8   LQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELR 67

Query: 137 SFLGLVGYYRRFMENVSHIATLLTQLTRKGA 166
            FLGL GYYRRF++N   I   LT+L +K +
Sbjct: 68  GFLGLTGYYRRFVKNYGKIVRPLTELLKKNS 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0042118.18.4e-5564.04pol protein [Cucumis melo var. makuwa][more]
TYK18061.18.4e-5564.04pol protein [Cucumis melo var. makuwa][more]
KAA0049960.12.5e-5464.61DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK07691.1 D... [more]
TYJ95917.12.5e-5465.17pol protein [Cucumis melo var. makuwa][more]
KAA0036853.12.5e-5465.17pol protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P208251.5e-2233.52Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
Q8I7P93.7e-2130.56Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
P043234.1e-2031.82Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
P104015.0e-1831.07Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas... [more]
P925235.6e-1745.05Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A5A7TH124.1e-5564.04Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67... [more]
A0A5D3D1D74.1e-5564.04Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30... [more]
A0A5A7U3V71.2e-5464.61DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7T1Q11.2e-5465.17Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20... [more]
A0A5D3B9W41.2e-5465.17Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
Match NameE-valueIdentityDescription
ATMG00860.14.0e-1845.05DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 116..165
e-value: 1.2E-16
score: 62.5
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 1..112
e-value: 2.2E-19
score: 71.6
NoneNo IPR availablePANTHERPTHR24559:SF345SUBFAMILY NOT NAMEDcoord: 77..164
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 77..164
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 2..164

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc12g0322811.1Cmc12g0322811.1mRNA