Cmc12g0322441 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc12g0322441
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr12: 10282079 .. 10282900 (-)
RNA-Seq Expression	Cmc12g0322441
Synteny	Cmc12g0322441

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCCGATTAGCTGGCACAATGTTGAATAAGAGTACAGCCTATCATCCGCAATCTGATGGCCAAACAGAAGTAGTTAACAGGGGGTTAGAGACCTACCTACGTTGTTTTTGCGGTGAGAGACCGAAGGAGTGTGTGTCGTGGCTACCGTGGGCAGAACATTGGTACAACACCACTTTTCATCGGTCACTAGGCGTTTCGCCTTTCCAGGTGTTGTATGGCAGGAAACCTCCATCGTTGATATCGTATGGGGAGGGTACCACAACTAATTCCACGTTGGCAGAACAGTTGAATGAAAGAGATACAGTCTTGGTTGCTCTTCGGGATCAGTTGTTATTGGCACAACAACAAATGAAACAATATGCTGATAAGAAGAGGAGACATGTAGAATATGACGTTGGTGAATGGGTCTTTTTGAAGATTAGGCCTTATCGACAGTTTTCGTTAAGAAAGAAACGAAATGAGAAATTATCCTCCAAGTATTTTGGGCCTTATGAGATTTTGGAGAAGGTGGGTACAGTGGCATATAAGTTAGACTTACCAGCCACTACATCTATTCATCCAGTTTTTCATGTTTCCCAGTTGAAAGAGTTTGTTGGGGATCAAACTGAAGTACAACCGACCAGTCAGTTTGTCAATGAGAACTTAGAATGGCAAGCTCAGCCGGAAGAAGCTTTGAAGTATCAGAAGAACAGTGCTGGTGGTTGGGAGGTTTTGATCCGTTGGAAAGATTTGTCGGAACATGAAGCTCCGTGGGAATGTTATAACGAAATCCAGCAGTTGTACCCCACTTTTCACCTTGTCACCTTGAGGACAAGGTGA

mRNA sequence

ATGTTCCGATTAGCTGGCACAATGTTGAATAAGAGTACAGCCTATCATCCGCAATCTGATGGCCAAACAGAAGTAGTTAACAGGGGGTTAGAGACCTACCTACGTTGTTTTTGCGGTGAGAGACCGAAGGAGTGTGTGTCGTGGCTACCGTGGGCAGAACATTGGTACAACACCACTTTTCATCGGTCACTAGGCGTTTCGCCTTTCCAGGTGTTGTATGGCAGGAAACCTCCATCGTTGATATCGTATGGGGAGGGTACCACAACTAATTCCACGTTGGCAGAACAGTTGAATGAAAGAGATACAGTCTTGGTTGCTCTTCGGGATCAGTTGTTATTGGCACAACAACAAATGAAACAATATGCTGATAAGAAGAGGAGACATGTAGAATATGACGTTGGTGAATGGGTCTTTTTGAAGATTAGGCCTTATCGACAGTTTTCGTTAAGAAAGAAACGAAATGAGAAATTATCCTCCAAGTATTTTGGGCCTTATGAGATTTTGGAGAAGGTGGGTACAGTGGCATATAAGTTAGACTTACCAGCCACTACATCTATTCATCCAGTTTTTCATGTTTCCCAGTTGAAAGAGTTTGTTGGGGATCAAACTGAAGTACAACCGACCAGTCAGTTTGTCAATGAGAACTTAGAATGGCAAGCTCAGCCGGAAGAAGCTTTGAAGTATCAGAAGAACAGTGCTGGTGGTTGGGAGGTTTTGATCCGTTGGAAAGATTTGTCGGAACATGAAGCTCCGTGGGAATGTTATAACGAAATCCAGCAGTTGTACCCCACTTTTCACCTTGTCACCTTGAGGACAAGGTGA

Coding sequence (CDS)

ATGTTCCGATTAGCTGGCACAATGTTGAATAAGAGTACAGCCTATCATCCGCAATCTGATGGCCAAACAGAAGTAGTTAACAGGGGGTTAGAGACCTACCTACGTTGTTTTTGCGGTGAGAGACCGAAGGAGTGTGTGTCGTGGCTACCGTGGGCAGAACATTGGTACAACACCACTTTTCATCGGTCACTAGGCGTTTCGCCTTTCCAGGTGTTGTATGGCAGGAAACCTCCATCGTTGATATCGTATGGGGAGGGTACCACAACTAATTCCACGTTGGCAGAACAGTTGAATGAAAGAGATACAGTCTTGGTTGCTCTTCGGGATCAGTTGTTATTGGCACAACAACAAATGAAACAATATGCTGATAAGAAGAGGAGACATGTAGAATATGACGTTGGTGAATGGGTCTTTTTGAAGATTAGGCCTTATCGACAGTTTTCGTTAAGAAAGAAACGAAATGAGAAATTATCCTCCAAGTATTTTGGGCCTTATGAGATTTTGGAGAAGGTGGGTACAGTGGCATATAAGTTAGACTTACCAGCCACTACATCTATTCATCCAGTTTTTCATGTTTCCCAGTTGAAAGAGTTTGTTGGGGATCAAACTGAAGTACAACCGACCAGTCAGTTTGTCAATGAGAACTTAGAATGGCAAGCTCAGCCGGAAGAAGCTTTGAAGTATCAGAAGAACAGTGCTGGTGGTTGGGAGGTTTTGATCCGTTGGAAAGATTTGTCGGAACATGAAGCTCCGTGGGAATGTTATAACGAAATCCAGCAGTTGTACCCCACTTTTCACCTTGTCACCTTGAGGACAAGGTGA

Protein sequence

MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNERDTVLVALRDQLLLAQQQMKQYADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTSIHPVFHVSQLKEFVGDQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLIRWKDLSEHEAPWECYNEIQQLYPTFHLVTLRTR

Homology

[Close]

BLAST of Cmc12g0322441 vs. NCBI nr
Match: KAA0040959.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK20298.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 562.0 bits (1447), Expect = 2.8e-156
Identity = 267/273 (97.80%), Postives = 272/273 (99.63%), Query Frame = 0


Query: 1   MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTF 60
           MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKEC+SWLPWAEHWYNTTF
Sbjct: 125 MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECMSWLPWAEHWYNTTF 184

Query: 61  HRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNERDTVLVALRDQLLLAQQQMKQ 120
           HRSLGVSPFQVLYGRKPPSLISYGEGTTT+STLAEQLNERDT+LVALRDQLLLAQQQMKQ
Sbjct: 185 HRSLGVSPFQVLYGRKPPSLISYGEGTTTSSTLAEQLNERDTILVALRDQLLLAQQQMKQ 244

Query: 121 YADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDL 180
           YADKKRRHVEYDVGEWVFLKIR YRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDL
Sbjct: 245 YADKKRRHVEYDVGEWVFLKIRSYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDL 304

Query: 181 PATTSIHPVFHVSQLKEFVGDQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLI 240
           PATTSIHPVFHVSQLKEFVGDQTEVQPT+QFVNENLEWQAQPEEALKYQKNSAGGWEVLI
Sbjct: 305 PATTSIHPVFHVSQLKEFVGDQTEVQPTTQFVNENLEWQAQPEEALKYQKNSAGGWEVLI 364

Query: 241 RWKDLSEHEAPWECYNEIQQLYPTFHLVTLRTR 274
           RWKDLSEHEAPWECYNEIQ+LYPTFHLVTLRTR
Sbjct: 365 RWKDLSEHEAPWECYNEIQRLYPTFHLVTLRTR 397

[Close]

BLAST of Cmc12g0322441 vs. NCBI nr
Match: KAA0032312.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYJ99433.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 457.6 bits (1176), Expect = 7.5e-125
Identity = 217/267 (81.27%), Postives = 234/267 (87.64%), Query Frame = 0


Query: 1   MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTF 60
           MFRLAG  LN+STAYHPQSDGQTEVVNRGLETYL CFC ERPKE VSWLPW E+WYNTTF
Sbjct: 118 MFRLAGKNLNRSTAYHPQSDGQTEVVNRGLETYLCCFCSERPKEWVSWLPWTEYWYNTTF 177

Query: 61  HRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNERDTVLVALRDQLLLAQQQMKQ 120
           +RSLG SPFQVLYGRKPPSL+SYG GTTTNSTLA+QL ER TVL ALR+QLLL  QQMKQ
Sbjct: 178 NRSLGTSPFQVLYGRKPPSLLSYGNGTTTNSTLADQLKERGTVLAALREQLLLTHQQMKQ 237

Query: 121 YADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDL 180
           YADKKRRHVE++VG+WV LKIRPYRQ SLRKKRN+KLS KYFGPYEI  KV TVAYKLDL
Sbjct: 238 YADKKRRHVEFNVGDWVLLKIRPYRQLSLRKKRNQKLSPKYFGPYEIQAKVRTVAYKLDL 297

Query: 181 PATTSIHPVFHVSQLKEFVGDQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLI 240
           P    IHPVFHVSQLK FVGD+T +QPT QFVNENLEWQAQPEE L+YQKN AG WEVLI
Sbjct: 298 PTDFLIHPVFHVSQLKRFVGDRTGIQPTLQFVNENLEWQAQPEEVLQYQKNKAGAWEVLI 357

Query: 241 RWKDLSEHEAPWECYNEIQQLYPTFHL 268
           RWK+L +HEA WE Y+EIQQ +PTFHL
Sbjct: 358 RWKNLPDHEALWESYDEIQQQFPTFHL 384

[Close]

BLAST of Cmc12g0322441 vs. NCBI nr
Match: TYK05590.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 433.0 bits (1112), Expect = 2.0e-117
Identity = 218/267 (81.65%), Postives = 226/267 (84.64%), Query Frame = 0


Query: 1   MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTF 60
           +FRLAGT LNKSTAYHP+S+GQTEVVNRGLETYL CFC                      
Sbjct: 297 LFRLAGTKLNKSTAYHPRSEGQTEVVNRGLETYLHCFC---------------------- 356

Query: 61  HRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNERDTVLVALRDQLLLAQQQMKQ 120
               GVS FQVLYGRKPPSLISYGEGTTTNSTLAEQL+ERDTVL ALR+QLLLAQQQMKQ
Sbjct: 357 ----GVSSFQVLYGRKPPSLISYGEGTTTNSTLAEQLSERDTVLAALRNQLLLAQQQMKQ 416

Query: 121 YADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDL 180
           YADKKRRHVEYD+GEWVFL IRPYRQ SLRKKRNEKLS KYFGP EILEKVG VAYKLDL
Sbjct: 417 YADKKRRHVEYDIGEWVFLNIRPYRQLSLRKKRNEKLSPKYFGPCEILEKVGLVAYKLDL 476

Query: 181 PATTSIHPVFHVSQLKEFVGDQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLI 240
           PATTSIHPVFHVSQLK+FVGDQT VQPT QFVNENLEWQAQ EEALKYQKNSAGGWEVLI
Sbjct: 477 PATTSIHPVFHVSQLKKFVGDQTGVQPTIQFVNENLEWQAQLEEALKYQKNSAGGWEVLI 536

Query: 241 RWKDLSEHEAPWECYNEIQQLYPTFHL 268
           RWKDL EHEA WECYNEIQ+L PTFHL
Sbjct: 537 RWKDLPEHEASWECYNEIQRLCPTFHL 537

[Close]

BLAST of Cmc12g0322441 vs. NCBI nr
Match: KAA0050450.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 419.1 bits (1076), Expect = 3.0e-113
Identity = 199/267 (74.53%), Postives = 224/267 (83.90%), Query Frame = 0


Query: 1    MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTF 60
            MFRLAGT LNKSTAYH QSDGQTEVVNRGLETYLRCFC E+PKE VSWL W E WYNTTF
Sbjct: 734  MFRLAGTKLNKSTAYHLQSDGQTEVVNRGLETYLRCFCSEKPKEWVSWLSWVEFWYNTTF 793

Query: 61   HRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNERDTVLVALRDQLLLAQQQMKQ 120
             R+L VS FQV+YGRKPP L+SYGEG T+NSTL EQL ERD +L ALR+ L+LAQQQMKQ
Sbjct: 794  QRTLRVSSFQVVYGRKPPLLLSYGEGETSNSTLDEQLRERDVILAALREHLILAQQQMKQ 853

Query: 121  YADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDL 180
            YAD KRR VEY VG+ VFLKIRP+RQ +LR+KRNEKLS KYFGPY+I+E++GTV YKLDL
Sbjct: 854  YADCKRRKVEYQVGDLVFLKIRPHRQLTLRRKRNEKLSPKYFGPYKIMERIGTVVYKLDL 913

Query: 181  PATTSIHPVFHVSQLKEFVGDQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLI 240
            PA TSI+ +FHVSQLK+ VGD T VQPT Q++NENLEWQAQPE+ L+Y+KN A GWEVLI
Sbjct: 914  PANTSINLIFHVSQLKKLVGDHTGVQPTIQYINENLEWQAQPEDILEYRKNKADGWEVLI 973

Query: 241  RWKDLSEHEAPWECYNEIQQLYPTFHL 268
             WK    HEA WE Y+EI QLYP  HL
Sbjct: 974  CWKGFPRHEASWEDYDEIHQLYPDLHL 1000

[Close]

BLAST of Cmc12g0322441 vs. NCBI nr
Match: KAA0062882.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 396.0 bits (1016), Expect = 2.7e-106
Identity = 182/267 (68.16%), Postives = 220/267 (82.40%), Query Frame = 0


Query: 1    MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTF 60
            +F++AGT L KST YHPQ+DGQTEVVNRGLETYLRCFC ERPKE + WLPWAE+WYNTT+
Sbjct: 814  LFKMAGTKLKKSTTYHPQTDGQTEVVNRGLETYLRCFCSERPKEWILWLPWAEYWYNTTY 873

Query: 61   HRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNERDTVLVALRDQLLLAQQQMKQ 120
             ++LG SPFQV+YGRKPP+L+SYGE  T+NS++ EQL ERD  L ALR+ LLLAQQQMK 
Sbjct: 874  QKALGKSPFQVVYGRKPPTLLSYGERRTSNSSIDEQLKERDVALDALREHLLLAQQQMKL 933

Query: 121  YADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDL 180
            YAD+KRRHVE+ V E V LKIRPYRQ +LR KRNEKLSS+YFGPY+ILE++G VAY+L+L
Sbjct: 934  YADQKRRHVEFQVDELVLLKIRPYRQTTLRSKRNEKLSSRYFGPYKILERIGEVAYRLEL 993

Query: 181  PATTSIHPVFHVSQLKEFVGDQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLI 240
            P   +IHPVFHVSQLK+FV  QT + PT Q + E  EWQ+QPEEAL Y+++ +G WEVLI
Sbjct: 994  PTDAAIHPVFHVSQLKKFVRQQTNILPTLQNITEKFEWQSQPEEALDYRQDKSGKWEVLI 1053

Query: 241  RWKDLSEHEAPWECYNEIQQLYPTFHL 268
             WK+L ++EA WE Y+EI Q YP  HL
Sbjct: 1054 AWKNLPDYEASWEDYDEINQRYPNLHL 1080

[Close]

BLAST of Cmc12g0322441 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 90.9 bits (224), Expect = 2.4e-17
Identity = 59/196 (30.10%), Postives = 100/196 (51.02%), Query Frame = 0


Query: 6    GTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLG 65
            G     S+A HPQ+DGQ+E   + L   LR +     +    +LP  E  YN+T  R+LG
Sbjct: 1254 GIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQNWHVYLPQIEFVYNSTPTRTLG 1313

Query: 66   VSPFQVLYGRKP--PSLISYGEGTTTNSTLAEQLNERDTVLVALRDQLLLAQQQMKQYAD 125
             SPF++  G  P  P++ S  E    + T  E       + +  ++QL  AQ +M+   +
Sbjct: 1314 KSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHLKALTIQTKEQLEHAQIEMETNNN 1373

Query: 126  KKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPAT 185
            ++R+ +  ++G+ V +    +R    +K    K+   Y GP+ +++K+   AY+LDL + 
Sbjct: 1374 QRRKPLLLNIGDHVLV----HRDAYFKKGAYMKVQQIYVGPFRVVKKINDNAYELDLNSH 1433

Query: 186  TSIHPVFHVSQLKEFV 200
               H V +V  LK+FV
Sbjct: 1434 KKKHRVINVQFLKKFV 1445

[Close]

BLAST of Cmc12g0322441 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 3.2e-17
Identity = 61/207 (29.47%), Postives = 102/207 (49.28%), Query Frame = 0


Query: 6    GTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLG 65
            G     S+A HPQ+DGQ+E   + L   LR +     +    +LP  E  YN+T  R+LG
Sbjct: 1280 GIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQNWHVYLPQIEFVYNSTPTRTLG 1339

Query: 66   VSPFQVLYGRKP--PSLISYGEGTTTNSTLAEQLNERDTVLVALRDQLLLAQQQMKQYAD 125
             SPF++  G  P  P++ S  E    + T  E       + +  ++QL  AQ +M+   +
Sbjct: 1340 KSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHLKALTIQTKEQLEHAQIEMETNNN 1399

Query: 126  KKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPAT 185
            ++R+ +  ++G+ V +    +R    +K    K+   Y GP+ +++K+   AY+LDL + 
Sbjct: 1400 QRRKPLLLNIGDHVLV----HRDAYFKKGAYMKVQQIYVGPFRVVKKINDNAYELDLNSH 1459

Query: 186  TSIHPVFHVSQLKEFVGDQTEVQPTSQ 211
               H V +V  LK     QT  Q  +Q
Sbjct: 1460 KKKHRVINVQFLKSLYTVQTRTQRINQ 1482

[Close]

BLAST of Cmc12g0322441 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-16
Identity = 58/194 (29.90%), Postives = 95/194 (48.97%), Query Frame = 0


Query: 12   STAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQV 71
            S  Y PQ+DGQTE  N+ +E  LRC C   P   V  +   +  YN   H +  ++PF++
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133

Query: 72   LY----GRKPPSLISYGEGTTTNSTLAEQLNERDTVLVALRDQLLLAQQQMKQYADKKRR 131
            ++       P  L S+ + T  NS       E   V   +++ L     +MK+Y D K +
Sbjct: 1134 VHRYSPALSPLELPSFSDKTDENS------QETIQVFQTVKEHLNTNNIKMKKYFDMKIQ 1193

Query: 132  HV-EYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTS- 191
             + E+  G+ V +K    R  +    ++ KL+  + GP+ +L+K G   Y+LDLP +   
Sbjct: 1194 EIEEFQPGDLVMVK----RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKH 1253

Query: 192  -IHPVFHVSQLKEF 199
                 FHVS L+++
Sbjct: 1254 MFSSTFHVSHLEKY 1257

[Close]

BLAST of Cmc12g0322441 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-16
Identity = 58/194 (29.90%), Postives = 95/194 (48.97%), Query Frame = 0


Query: 12   STAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQV 71
            S  Y PQ+DGQTE  N+ +E  LRC C   P   V  +   +  YN   H +  ++PF++
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133

Query: 72   LY----GRKPPSLISYGEGTTTNSTLAEQLNERDTVLVALRDQLLLAQQQMKQYADKKRR 131
            ++       P  L S+ + T  NS       E   V   +++ L     +MK+Y D K +
Sbjct: 1134 VHRYSPALSPLELPSFSDKTDENS------QETIQVFQTVKEHLNTNNIKMKKYFDMKIQ 1193

Query: 132  HV-EYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTS- 191
             + E+  G+ V +K    R  +    ++ KL+  + GP+ +L+K G   Y+LDLP +   
Sbjct: 1194 EIEEFQPGDLVMVK----RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKH 1253

Query: 192  -IHPVFHVSQLKEF 199
                 FHVS L+++
Sbjct: 1254 MFSSTFHVSHLEKY 1257

[Close]

BLAST of Cmc12g0322441 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-16
Identity = 58/194 (29.90%), Postives = 95/194 (48.97%), Query Frame = 0


Query: 12   STAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTFHRSLGVSPFQV 71
            S  Y PQ+DGQTE  N+ +E  LRC C   P   V  +   +  YN   H +  ++PF++
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133

Query: 72   LY----GRKPPSLISYGEGTTTNSTLAEQLNERDTVLVALRDQLLLAQQQMKQYADKKRR 131
            ++       P  L S+ + T  NS       E   V   +++ L     +MK+Y D K +
Sbjct: 1134 VHRYSPALSPLELPSFSDKTDENS------QETIQVFQTVKEHLNTNNIKMKKYFDMKIQ 1193

Query: 132  HV-EYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDLPATTS- 191
             + E+  G+ V +K    R  +    ++ KL+  + GP+ +L+K G   Y+LDLP +   
Sbjct: 1194 EIEEFQPGDLVMVK----RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKH 1253

Query: 192  -IHPVFHVSQLKEF 199
                 FHVS L+++
Sbjct: 1254 MFSSTFHVSHLEKY 1257

[Close]

BLAST of Cmc12g0322441 vs. ExPASy TrEMBL
Match: A0A5A7TI22 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00260 PE=4 SV=1)

HSP 1 Score: 562.0 bits (1447), Expect = 1.4e-156
Identity = 267/273 (97.80%), Postives = 272/273 (99.63%), Query Frame = 0


Query: 1   MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTF 60
           MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKEC+SWLPWAEHWYNTTF
Sbjct: 125 MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECMSWLPWAEHWYNTTF 184

Query: 61  HRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNERDTVLVALRDQLLLAQQQMKQ 120
           HRSLGVSPFQVLYGRKPPSLISYGEGTTT+STLAEQLNERDT+LVALRDQLLLAQQQMKQ
Sbjct: 185 HRSLGVSPFQVLYGRKPPSLISYGEGTTTSSTLAEQLNERDTILVALRDQLLLAQQQMKQ 244

Query: 121 YADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDL 180
           YADKKRRHVEYDVGEWVFLKIR YRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDL
Sbjct: 245 YADKKRRHVEYDVGEWVFLKIRSYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDL 304

Query: 181 PATTSIHPVFHVSQLKEFVGDQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLI 240
           PATTSIHPVFHVSQLKEFVGDQTEVQPT+QFVNENLEWQAQPEEALKYQKNSAGGWEVLI
Sbjct: 305 PATTSIHPVFHVSQLKEFVGDQTEVQPTTQFVNENLEWQAQPEEALKYQKNSAGGWEVLI 364

Query: 241 RWKDLSEHEAPWECYNEIQQLYPTFHLVTLRTR 274
           RWKDLSEHEAPWECYNEIQ+LYPTFHLVTLRTR
Sbjct: 365 RWKDLSEHEAPWECYNEIQRLYPTFHLVTLRTR 397

[Close]

BLAST of Cmc12g0322441 vs. ExPASy TrEMBL
Match: A0A5D3BJH1 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold316G00220 PE=4 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 3.6e-125
Identity = 217/267 (81.27%), Postives = 234/267 (87.64%), Query Frame = 0


Query: 1   MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTF 60
           MFRLAG  LN+STAYHPQSDGQTEVVNRGLETYL CFC ERPKE VSWLPW E+WYNTTF
Sbjct: 118 MFRLAGKNLNRSTAYHPQSDGQTEVVNRGLETYLCCFCSERPKEWVSWLPWTEYWYNTTF 177

Query: 61  HRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNERDTVLVALRDQLLLAQQQMKQ 120
           +RSLG SPFQVLYGRKPPSL+SYG GTTTNSTLA+QL ER TVL ALR+QLLL  QQMKQ
Sbjct: 178 NRSLGTSPFQVLYGRKPPSLLSYGNGTTTNSTLADQLKERGTVLAALREQLLLTHQQMKQ 237

Query: 121 YADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDL 180
           YADKKRRHVE++VG+WV LKIRPYRQ SLRKKRN+KLS KYFGPYEI  KV TVAYKLDL
Sbjct: 238 YADKKRRHVEFNVGDWVLLKIRPYRQLSLRKKRNQKLSPKYFGPYEIQAKVRTVAYKLDL 297

Query: 181 PATTSIHPVFHVSQLKEFVGDQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLI 240
           P    IHPVFHVSQLK FVGD+T +QPT QFVNENLEWQAQPEE L+YQKN AG WEVLI
Sbjct: 298 PTDFLIHPVFHVSQLKRFVGDRTGIQPTLQFVNENLEWQAQPEEVLQYQKNKAGAWEVLI 357

Query: 241 RWKDLSEHEAPWECYNEIQQLYPTFHL 268
           RWK+L +HEA WE Y+EIQQ +PTFHL
Sbjct: 358 RWKNLPDHEALWESYDEIQQQFPTFHL 384

[Close]

BLAST of Cmc12g0322441 vs. ExPASy TrEMBL
Match: A0A5D3C2K8 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00380 PE=4 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 9.6e-118
Identity = 218/267 (81.65%), Postives = 226/267 (84.64%), Query Frame = 0


Query: 1   MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTF 60
           +FRLAGT LNKSTAYHP+S+GQTEVVNRGLETYL CFC                      
Sbjct: 297 LFRLAGTKLNKSTAYHPRSEGQTEVVNRGLETYLHCFC---------------------- 356

Query: 61  HRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNERDTVLVALRDQLLLAQQQMKQ 120
               GVS FQVLYGRKPPSLISYGEGTTTNSTLAEQL+ERDTVL ALR+QLLLAQQQMKQ
Sbjct: 357 ----GVSSFQVLYGRKPPSLISYGEGTTTNSTLAEQLSERDTVLAALRNQLLLAQQQMKQ 416

Query: 121 YADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDL 180
           YADKKRRHVEYD+GEWVFL IRPYRQ SLRKKRNEKLS KYFGP EILEKVG VAYKLDL
Sbjct: 417 YADKKRRHVEYDIGEWVFLNIRPYRQLSLRKKRNEKLSPKYFGPCEILEKVGLVAYKLDL 476

Query: 181 PATTSIHPVFHVSQLKEFVGDQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLI 240
           PATTSIHPVFHVSQLK+FVGDQT VQPT QFVNENLEWQAQ EEALKYQKNSAGGWEVLI
Sbjct: 477 PATTSIHPVFHVSQLKKFVGDQTGVQPTIQFVNENLEWQAQLEEALKYQKNSAGGWEVLI 536

Query: 241 RWKDLSEHEAPWECYNEIQQLYPTFHL 268
           RWKDL EHEA WECYNEIQ+L PTFHL
Sbjct: 537 RWKDLPEHEASWECYNEIQRLCPTFHL 537

[Close]

BLAST of Cmc12g0322441 vs. ExPASy TrEMBL
Match: A0A5A7U5F9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00570 PE=4 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 1.4e-113
Identity = 199/267 (74.53%), Postives = 224/267 (83.90%), Query Frame = 0


Query: 1    MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTF 60
            MFRLAGT LNKSTAYH QSDGQTEVVNRGLETYLRCFC E+PKE VSWL W E WYNTTF
Sbjct: 734  MFRLAGTKLNKSTAYHLQSDGQTEVVNRGLETYLRCFCSEKPKEWVSWLSWVEFWYNTTF 793

Query: 61   HRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNERDTVLVALRDQLLLAQQQMKQ 120
             R+L VS FQV+YGRKPP L+SYGEG T+NSTL EQL ERD +L ALR+ L+LAQQQMKQ
Sbjct: 794  QRTLRVSSFQVVYGRKPPLLLSYGEGETSNSTLDEQLRERDVILAALREHLILAQQQMKQ 853

Query: 121  YADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDL 180
            YAD KRR VEY VG+ VFLKIRP+RQ +LR+KRNEKLS KYFGPY+I+E++GTV YKLDL
Sbjct: 854  YADCKRRKVEYQVGDLVFLKIRPHRQLTLRRKRNEKLSPKYFGPYKIMERIGTVVYKLDL 913

Query: 181  PATTSIHPVFHVSQLKEFVGDQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLI 240
            PA TSI+ +FHVSQLK+ VGD T VQPT Q++NENLEWQAQPE+ L+Y+KN A GWEVLI
Sbjct: 914  PANTSINLIFHVSQLKKLVGDHTGVQPTIQYINENLEWQAQPEDILEYRKNKADGWEVLI 973

Query: 241  RWKDLSEHEAPWECYNEIQQLYPTFHL 268
             WK    HEA WE Y+EI QLYP  HL
Sbjct: 974  CWKGFPRHEASWEDYDEIHQLYPDLHL 1000

[Close]

BLAST of Cmc12g0322441 vs. ExPASy TrEMBL
Match: A0A5A7V3R8 (Eukaryotic translation initiation factor 3 30 kDa subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4427G00120 PE=4 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 1.3e-106
Identity = 182/267 (68.16%), Postives = 220/267 (82.40%), Query Frame = 0


Query: 1    MFRLAGTMLNKSTAYHPQSDGQTEVVNRGLETYLRCFCGERPKECVSWLPWAEHWYNTTF 60
            +F++AGT L KST YHPQ+DGQTEVVNRGLETYLRCFC ERPKE + WLPWAE+WYNTT+
Sbjct: 814  LFKMAGTKLKKSTTYHPQTDGQTEVVNRGLETYLRCFCSERPKEWILWLPWAEYWYNTTY 873

Query: 61   HRSLGVSPFQVLYGRKPPSLISYGEGTTTNSTLAEQLNERDTVLVALRDQLLLAQQQMKQ 120
             ++LG SPFQV+YGRKPP+L+SYGE  T+NS++ EQL ERD  L ALR+ LLLAQQQMK 
Sbjct: 874  QKALGKSPFQVVYGRKPPTLLSYGERRTSNSSIDEQLKERDVALDALREHLLLAQQQMKL 933

Query: 121  YADKKRRHVEYDVGEWVFLKIRPYRQFSLRKKRNEKLSSKYFGPYEILEKVGTVAYKLDL 180
            YAD+KRRHVE+ V E V LKIRPYRQ +LR KRNEKLSS+YFGPY+ILE++G VAY+L+L
Sbjct: 934  YADQKRRHVEFQVDELVLLKIRPYRQTTLRSKRNEKLSSRYFGPYKILERIGEVAYRLEL 993

Query: 181  PATTSIHPVFHVSQLKEFVGDQTEVQPTSQFVNENLEWQAQPEEALKYQKNSAGGWEVLI 240
            P   +IHPVFHVSQLK+FV  QT + PT Q + E  EWQ+QPEEAL Y+++ +G WEVLI
Sbjct: 994  PTDAAIHPVFHVSQLKKFVRQQTNILPTLQNITEKFEWQSQPEEALDYRQDKSGKWEVLI 1053

Query: 241  RWKDLSEHEAPWECYNEIQQLYPTFHL 268
             WK+L ++EA WE Y+EI Q YP  HL
Sbjct: 1054 AWKNLPDYEASWEDYDEINQRYPNLHL 1080

The following BLAST results are available for this feature:

BLAST of Cmc12g0322441 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040959.1	2.8e-156	97.80	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK20298.1 Tran...	[more]
KAA0032312.1	7.5e-125	81.27	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYJ99433.1 Tran...	[more]
TYK05590.1	2.0e-117	81.65	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0050450.1	3.0e-113	74.53	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062882.1	2.7e-106	68.16	transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc12g0322441 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	2.4e-17	30.10	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	3.2e-17	29.47	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	1.2e-16	29.90	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.2e-16	29.90	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.2e-16	29.90	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc12g0322441 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TI22	1.4e-156	97.80	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3BJH1	3.6e-125	81.27	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3C2K8	9.6e-118	81.65	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7U5F9	1.4e-113	74.53	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7V3R8	1.3e-106	68.16	Eukaryotic translation initiation factor 3 30 kDa subunit OS=Cucumis melo var. m...	[more]

BLAST of Cmc12g0322441 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 104..124
None	No IPR available	PANTHER	PTHR46148:SF38	PROTEIN NYNRIN-LIKE	coord: 3..250
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 3..250
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..117 e-value: 2.5E-23 score: 84.4
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..76 score: 8.584843
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 3..72
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 184..261

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc12g0322441.1	Cmc12g0322441.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005852	eukaryotic translation initiation factor 3 complex
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003676	nucleic acid binding