Cmc12g0321421 (gene) Melon (Charmono) v1.1

Overview
NameCmc12g0321421
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionIntegrase catalytic domain-containing protein
LocationCMiso1.1chr12: 8480424 .. 8480900 (-)
RNA-Seq ExpressionCmc12g0321421
SyntenyCmc12g0321421
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGTCTCAATCACATTATGTTGATACAATATTGAAGAAATATAAAAAACATGACATTGTGATTGCAAAGACCCCAATTGATGCTAGTCTCCATTTAGGTAAAAATAATGGGGATAGTATAGCACAATTAGAATACTCTCGCATCATTGGTAGTTTAATGTACATTATGAGTTGTACACGTCCTGATATAGCGTCTGTTGTAAGCAAGTTAAGTTGCTATACAAGTAATCCAGGTCAAGATCATTGGAAAGCTATCTTGAGAATTTTAGGATACTTAAAACATACTAAAAATTATGGATTACACTACTCTTGCTATCCTGCTGTACTTGAAGGTTATAGTGATGCCAACTGGATATCAAGCACTAAAGACTCCAAATCCACAAGTGGTTACATTTTTACCCTTGGCAGTGAGGTTGTATCTTGGAAATCTTCCAAACAAACATGTATAGCACGATCATGGAATCTGAATTTATAG

mRNA sequence

ATGCTGTCTCAATCACATTATGTTGATACAATATTGAAGAAATATAAAAAACATGACATTGTGATTGCAAAGACCCCAATTGATGCTAGTCTCCATTTAGGTAAAAATAATGGGGATAGTATAGCACAATTAGAATACTCTCGCATCATTGGTAGTTTAATGTACATTATGAGTTGTACACGTCCTGATATAGCGTCTGTTGTAAGCAAGTTAAGTTGCTATACAAGTAATCCAGGTCAAGATCATTGGAAAGCTATCTTGAGAATTTTAGGATACTTAAAACATACTAAAAATTATGGATTACACTACTCTTGCTATCCTGCTGTACTTGAAGGTTATAGTGATGCCAACTGGATATCAAGCACTAAAGACTCCAAATCCACAAGTGGTTACATTTTTACCCTTGGCAGTGAGGTTGTATCTTGGAAATCTTCCAAACAAACATGTATAGCACGATCATGGAATCTGAATTTATAG

Coding sequence (CDS)

ATGCTGTCTCAATCACATTATGTTGATACAATATTGAAGAAATATAAAAAACATGACATTGTGATTGCAAAGACCCCAATTGATGCTAGTCTCCATTTAGGTAAAAATAATGGGGATAGTATAGCACAATTAGAATACTCTCGCATCATTGGTAGTTTAATGTACATTATGAGTTGTACACGTCCTGATATAGCGTCTGTTGTAAGCAAGTTAAGTTGCTATACAAGTAATCCAGGTCAAGATCATTGGAAAGCTATCTTGAGAATTTTAGGATACTTAAAACATACTAAAAATTATGGATTACACTACTCTTGCTATCCTGCTGTACTTGAAGGTTATAGTGATGCCAACTGGATATCAAGCACTAAAGACTCCAAATCCACAAGTGGTTACATTTTTACCCTTGGCAGTGAGGTTGTATCTTGGAAATCTTCCAAACAAACATGTATAGCACGATCATGGAATCTGAATTTATAG

Protein sequence

MLSQSHYVDTILKKYKKHDIVIAKTPIDASLHLGKNNGDSIAQLEYSRIIGSLMYIMSCTRPDIASVVSKLSCYTSNPGQDHWKAILRILGYLKHTKNYGLHYSCYPAVLEGYSDANWISSTKDSKSTSGYIFTLGSEVVSWKSSKQTCIARSWNLNL
Homology
BLAST of Cmc12g0321421 vs. NCBI nr
Match: WP_140189331.1 (DDE-type integrase/transposase/recombinase [Xylella fastidiosa] >TNW01020.1 hypothetical protein C5H24_11495 [Xylella fastidiosa])

HSP 1 Score: 236.5 bits (602), Expect = 1.6e-58
Identity = 110/152 (72.37%), Postives = 130/152 (85.53%), Query Frame = 0

Query: 2   LSQSHYVDTILKKYKKHDIVIAKTPIDASLHLGKNNGDSIAQLEYSRIIGSLMYIMSCTR 61
           LSQ+HYVD IL+K+ + D  IA+TP+D SLHL KN G+ ++QLEYSRIIGSLMY+MSCTR
Sbjct: 748 LSQTHYVDKILEKFNQSDTGIARTPVDVSLHLSKNGGEGVSQLEYSRIIGSLMYLMSCTR 807

Query: 62  PDIASVVSKLSCYTSNPGQDHWKAILRILGYLKHTKNYGLHYSCYPAVLEGYSDANWISS 121
           PDIA  VS+LS YTSNPG DHWKAI+R+L YL++T++ GLHY+ YPAVLEGY DANWIS 
Sbjct: 808 PDIAYSVSRLSRYTSNPGHDHWKAIVRVLHYLRYTRDLGLHYARYPAVLEGYCDANWISD 867

Query: 122 TKDSKSTSGYIFTLGSEVVSWKSSKQTCIARS 154
            KDSKSTSGY+FTLG   V+WKSSKQTCIARS
Sbjct: 868 MKDSKSTSGYVFTLGGAAVAWKSSKQTCIARS 899

BLAST of Cmc12g0321421 vs. NCBI nr
Match: RVW67960.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 234.2 bits (596), Expect = 7.8e-58
Identity = 110/153 (71.90%), Postives = 133/153 (86.93%), Query Frame = 0

Query: 1    MLSQSHYVDTILKKYKKHDIVIAKTPIDASLHLGKNNGDSIAQLEYSRIIGSLMYIMSCT 60
            +LSQSHY++ IL+K+KK+DI   KT +D +LHL KN G   +QLEYSRIIGSLMY+M+CT
Sbjct: 900  ILSQSHYIEKILEKFKKYDIRPKKTLVDVNLHLFKNTGIGKSQLEYSRIIGSLMYVMNCT 959

Query: 61   RPDIASVVSKLSCYTSNPGQDHWKAILRILGYLKHTKNYGLHYSCYPAVLEGYSDANWIS 120
             PDIA  VSKLS +TSNPG++HWK+I+R+LGYLK+T+NYGLH++ YPAVLEGYSDANWIS
Sbjct: 960  GPDIAYSVSKLSRFTSNPGENHWKSIIRVLGYLKYTQNYGLHFTRYPAVLEGYSDANWIS 1019

Query: 121  STKDSKSTSGYIFTLGSEVVSWKSSKQTCIARS 154
             +KDSKSTSGY+FTLG   VSWKSSKQTCIARS
Sbjct: 1020 DSKDSKSTSGYVFTLGGAAVSWKSSKQTCIARS 1052

BLAST of Cmc12g0321421 vs. NCBI nr
Match: PSR86206.1 (Endonuclease [Actinidia chinensis var. chinensis])

HSP 1 Score: 231.9 bits (590), Expect = 3.9e-57
Identity = 108/152 (71.05%), Postives = 128/152 (84.21%), Query Frame = 0

Query: 2    LSQSHYVDTILKKYKKHDIVIAKTPIDASLHLGKNNGDSIAQLEYSRIIGSLMYIMSCTR 61
            LSQ+HY+D IL K+ K D  +A+TPID +LHL KN G+  +QLEYSRIIGSLMY+MSCTR
Sbjct: 1066 LSQTHYIDKILTKFNKSDTNVARTPIDVTLHLSKNGGEGESQLEYSRIIGSLMYLMSCTR 1125

Query: 62   PDIASVVSKLSCYTSNPGQDHWKAILRILGYLKHTKNYGLHYSCYPAVLEGYSDANWISS 121
            PDIA  VS+LS YTSNPG DHWKAI+R+L YL++T+++GLHY+ +PAVLEGY DANWIS 
Sbjct: 1126 PDIAYSVSRLSRYTSNPGSDHWKAIVRLLRYLRYTRDFGLHYTRFPAVLEGYCDANWISD 1185

Query: 122  TKDSKSTSGYIFTLGSEVVSWKSSKQTCIARS 154
             KDSKSTSGY+F LG   VSWKSSKQTCIARS
Sbjct: 1186 MKDSKSTSGYVFMLGGAAVSWKSSKQTCIARS 1217

BLAST of Cmc12g0321421 vs. NCBI nr
Match: PSS35063.1 (Endonuclease [Actinidia chinensis var. chinensis])

HSP 1 Score: 231.9 bits (590), Expect = 3.9e-57
Identity = 108/152 (71.05%), Postives = 128/152 (84.21%), Query Frame = 0

Query: 2    LSQSHYVDTILKKYKKHDIVIAKTPIDASLHLGKNNGDSIAQLEYSRIIGSLMYIMSCTR 61
            LSQ+HY+D IL K+ K D  +A+TPID +LHL KN G+  +QLEYSRIIGSLMY+MSCTR
Sbjct: 1082 LSQTHYIDKILTKFNKSDTNVARTPIDVTLHLSKNGGEGESQLEYSRIIGSLMYLMSCTR 1141

Query: 62   PDIASVVSKLSCYTSNPGQDHWKAILRILGYLKHTKNYGLHYSCYPAVLEGYSDANWISS 121
            PDIA  VS+LS YTSNPG DHWKAI+R+L YL++T+++GLHY+ +PAVLEGY DANWIS 
Sbjct: 1142 PDIAYSVSRLSRYTSNPGSDHWKAIVRLLRYLRYTRDFGLHYTRFPAVLEGYCDANWISD 1201

Query: 122  TKDSKSTSGYIFTLGSEVVSWKSSKQTCIARS 154
             KDSKSTSGY+F LG   VSWKSSKQTCIARS
Sbjct: 1202 MKDSKSTSGYVFMLGGAAVSWKSSKQTCIARS 1233

BLAST of Cmc12g0321421 vs. NCBI nr
Match: RVW43864.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 229.9 bits (585), Expect = 1.5e-56
Identity = 108/153 (70.59%), Postives = 129/153 (84.31%), Query Frame = 0

Query: 1   MLSQSHYVDTILKKYKKHDIVIAKTPIDASLHLGKNNGDSIAQLEYSRIIGSLMYIMSCT 60
           +LSQSHYVD IL K+ K +  +A+TP+D +LHL KN G+S++Q+EYSRIIGSLMY+MSCT
Sbjct: 285 ILSQSHYVDKILGKFDKDNSGVARTPVDVTLHLSKNKGESVSQVEYSRIIGSLMYLMSCT 344

Query: 61  RPDIASVVSKLSCYTSNPGQDHWKAILRILGYLKHTKNYGLHYSCYPAVLEGYSDANWIS 120
           RPDIA  VSKLS YTSNPG  HW+ I+R+L YL+ T++YGLHY+ YPAVLEGYSDANWIS
Sbjct: 345 RPDIAYAVSKLSRYTSNPGAKHWQGIIRVLKYLRFTRDYGLHYTRYPAVLEGYSDANWIS 404

Query: 121 STKDSKSTSGYIFTLGSEVVSWKSSKQTCIARS 154
           + KDSKS SGY+FTLG   VSWKSSKQT IARS
Sbjct: 405 NVKDSKSHSGYVFTLGGAAVSWKSSKQTVIARS 437

BLAST of Cmc12g0321421 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 9.1e-25
Identity = 58/159 (36.48%), Postives = 90/159 (56.60%), Query Frame = 0

Query: 2    LSQSHYVDTILKKYKKHDIVIAKTPIDASLHLGK-------NNGDSIAQLEYSRIIGSLM 61
            LSQ  Y++ +L+++   +     TP+   L L K           ++A++ YS  +GSLM
Sbjct: 1060 LSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLM 1119

Query: 62   YIMSCTRPDIASVVSKLSCYTSNPGQDHWKAILRILGYLKHTKNYGLHYSCYPAVLEGYS 121
            Y M CTRPDIA  V  +S +  NPG++HW+A+  IL YL+ T    L +     +L+GY+
Sbjct: 1120 YAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYT 1179

Query: 122  DANWISSTKDSKSTSGYIFTLGSEVVSWKSSKQTCIARS 154
            DA+      + KS++GY+FT     +SW+S  Q C+A S
Sbjct: 1180 DADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALS 1218

BLAST of Cmc12g0321421 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.1e-21
Identity = 49/109 (44.95%), Postives = 70/109 (64.22%), Query Frame = 0

Query: 46  YSRIIGSLMYIMSCTRPDIASVVSKLSCYTSNPGQDHWKAILRILGYLKHTKNYGLHYS- 105
           Y   +G++MY+M  TRPD+A+ V  LS + S+P   HW+A+ R+L YL+ T+ YGL ++ 
Sbjct: 6   YLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTR 65

Query: 106 CYPAVLEGYSDANWISSTKDSKSTSGYIFTLGSEVVSWKSSKQTCIARS 154
              A L GYSDA+W    +  +STSGY+F L    VSW+S KQ  +A S
Sbjct: 66  AGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALS 114

BLAST of Cmc12g0321421 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 97.1 bits (240), Expect = 2.0e-19
Identity = 54/156 (34.62%), Postives = 83/156 (53.21%), Query Frame = 0

Query: 2    LSQSHYVDTILKKYKKHDIVIAKTPIDASLHLGKNNGDSIAQLEYSRIIGSLMYIMSCTR 61
            LSQS YV  IL K+   +     TP+ + ++    N D         +IG LMYIM CTR
Sbjct: 1137 LSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTR 1196

Query: 62   PDIASVVSKLSCYTSNPGQDHWKAILRILGYLKHTKNYGLHYS---CYPAVLEGYSDANW 121
            PD+ + V+ LS Y+S    + W+ + R+L YLK T +  L +     +   + GY D++W
Sbjct: 1197 PDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDW 1256

Query: 122  ISSTKDSKSTSGYIFTL-GSEVVSWKSSKQTCIARS 154
              S  D KST+GY+F +    ++ W + +Q  +A S
Sbjct: 1257 AGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAAS 1292

BLAST of Cmc12g0321421 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.4e-19
Identity = 58/154 (37.66%), Postives = 81/154 (52.60%), Query Frame = 0

Query: 2    LSQSHYVDTILKKYKKHDIVIAKTPIDASLHLGKNNGDSIAQ-LEYSRIIGSLMYIMSCT 61
            LSQ  Y   +L +          TP+  S  L  ++G  +    EY  I+GSL Y ++ T
Sbjct: 1183 LSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQY-LAFT 1242

Query: 62   RPDIASVVSKLSCYTSNPGQDHWKAILRILGYLKHTKNYGLHYSCYPAV-LEGYSDANWI 121
            RPD++  V++LS Y   P  DHW A+ R+L YL  T ++G+       + L  YSDA+W 
Sbjct: 1243 RPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWA 1302

Query: 122  SSTKDSKSTSGYIFTLGSEVVSWKSSKQTCIARS 154
              T D  ST+GYI  LG   +SW S KQ  + RS
Sbjct: 1303 GDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRS 1335

BLAST of Cmc12g0321421 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-17
Identity = 57/154 (37.01%), Postives = 81/154 (52.60%), Query Frame = 0

Query: 2    LSQSHYVDTILKKYKKHDIVIAKTPIDASLHLGKNNGDSIAQ-LEYSRIIGSLMYIMSCT 61
            LSQ  Y+  +L +          TP+  S  L   +G  +    EY  I+GSL Y ++ T
Sbjct: 1200 LSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQY-LAFT 1259

Query: 62   RPDIASVVSKLSCYTSNPGQDHWKAILRILGYLKHTKNYGLHYSCYPAV-LEGYSDANWI 121
            RPDI+  V++LS +   P ++H +A+ RIL YL  T N+G+       + L  YSDA+W 
Sbjct: 1260 RPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWA 1319

Query: 122  SSTKDSKSTSGYIFTLGSEVVSWKSSKQTCIARS 154
                D  ST+GYI  LG   +SW S KQ  + RS
Sbjct: 1320 GDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRS 1352

BLAST of Cmc12g0321421 vs. ExPASy TrEMBL
Match: A0A2N9F8T0 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11302 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 5.8e-59
Identity = 111/153 (72.55%), Postives = 131/153 (85.62%), Query Frame = 0

Query: 1   MLSQSHYVDTILKKYKKHDIVIAKTPIDASLHLGKNNGDSIAQLEYSRIIGSLMYIMSCT 60
           +LSQSHY+  +L+K+ ++D    KTPID +LHL KN G+ I+QLEYS+IIGSLMYIM+CT
Sbjct: 599 VLSQSHYIKKVLEKFGRYDDSPVKTPIDVNLHLSKNKGNGISQLEYSQIIGSLMYIMNCT 658

Query: 61  RPDIASVVSKLSCYTSNPGQDHWKAILRILGYLKHTKNYGLHYSCYPAVLEGYSDANWIS 120
           RPDIA  VSKLS YTSNPG+DHWKAI+R+L YLK+T NYG+HY+ YPAVLEGYSDANWIS
Sbjct: 659 RPDIAYSVSKLSRYTSNPGEDHWKAIVRVLRYLKYTLNYGVHYTRYPAVLEGYSDANWIS 718

Query: 121 STKDSKSTSGYIFTLGSEVVSWKSSKQTCIARS 154
            T D+KSTSGY+FTLG   VSWKSSKQTCIARS
Sbjct: 719 DTNDTKSTSGYVFTLGGAAVSWKSSKQTCIARS 751

BLAST of Cmc12g0321421 vs. ExPASy TrEMBL
Match: A0A2N9F5X3 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10163 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.0e-58
Identity = 111/153 (72.55%), Postives = 131/153 (85.62%), Query Frame = 0

Query: 1   MLSQSHYVDTILKKYKKHDIVIAKTPIDASLHLGKNNGDSIAQLEYSRIIGSLMYIMSCT 60
           +LSQSHY+  +L+K+ ++D    KTPID +LHL KN G+ I+QLEYS+IIGSLMYIM+CT
Sbjct: 550 VLSQSHYIKKVLEKFGRYDDSPVKTPIDVNLHLTKNKGNGISQLEYSQIIGSLMYIMNCT 609

Query: 61  RPDIASVVSKLSCYTSNPGQDHWKAILRILGYLKHTKNYGLHYSCYPAVLEGYSDANWIS 120
           RPDIA  VSKLS YTSNPG+DHWKAI+R+L YLK+T NYG+HY+ YPAVLEGYSDANWIS
Sbjct: 610 RPDIAYSVSKLSRYTSNPGEDHWKAIVRVLRYLKYTLNYGVHYTRYPAVLEGYSDANWIS 669

Query: 121 STKDSKSTSGYIFTLGSEVVSWKSSKQTCIARS 154
            T D+KSTSGY+FTLG   VSWKSSKQTCIARS
Sbjct: 670 DTNDTKSTSGYVFTLGGAAVSWKSSKQTCIARS 702

BLAST of Cmc12g0321421 vs. ExPASy TrEMBL
Match: A0A2N9GPK3 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29231 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.0e-58
Identity = 111/153 (72.55%), Postives = 131/153 (85.62%), Query Frame = 0

Query: 1   MLSQSHYVDTILKKYKKHDIVIAKTPIDASLHLGKNNGDSIAQLEYSRIIGSLMYIMSCT 60
           +LSQSHY+  +L+K+ ++D    KTPID +LHL KN G+ I+QLEYS+IIGSLMYIM+CT
Sbjct: 563 VLSQSHYIKKVLEKFGRYDDSPVKTPIDVNLHLTKNKGNGISQLEYSQIIGSLMYIMNCT 622

Query: 61  RPDIASVVSKLSCYTSNPGQDHWKAILRILGYLKHTKNYGLHYSCYPAVLEGYSDANWIS 120
           RPDIA  VSKLS YTSNPG+DHWKAI+R+L YLK+T NYG+HY+ YPAVLEGYSDANWIS
Sbjct: 623 RPDIAYSVSKLSRYTSNPGEDHWKAIVRVLRYLKYTLNYGVHYTRYPAVLEGYSDANWIS 682

Query: 121 STKDSKSTSGYIFTLGSEVVSWKSSKQTCIARS 154
            T D+KSTSGY+FTLG   VSWKSSKQTCIARS
Sbjct: 683 DTNDTKSTSGYVFTLGGAAVSWKSSKQTCIARS 715

BLAST of Cmc12g0321421 vs. ExPASy TrEMBL
Match: A0A2N9GUH4 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30816 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.3e-58
Identity = 110/153 (71.90%), Postives = 131/153 (85.62%), Query Frame = 0

Query: 1   MLSQSHYVDTILKKYKKHDIVIAKTPIDASLHLGKNNGDSIAQLEYSRIIGSLMYIMSCT 60
           +LSQSHY+  +L+K+ ++D    KTP+D +LHL KN G+ I+QLEYS+IIGSLMYIM+CT
Sbjct: 469 VLSQSHYIKKVLEKFGRYDDSPVKTPVDVNLHLTKNKGNGISQLEYSQIIGSLMYIMNCT 528

Query: 61  RPDIASVVSKLSCYTSNPGQDHWKAILRILGYLKHTKNYGLHYSCYPAVLEGYSDANWIS 120
           RPDIA  VSKLS YTSNPG+DHWKAI+R+L YLK+T NYG+HY+ YPAVLEGYSDANWIS
Sbjct: 529 RPDIAYSVSKLSRYTSNPGEDHWKAIVRVLRYLKYTLNYGVHYTRYPAVLEGYSDANWIS 588

Query: 121 STKDSKSTSGYIFTLGSEVVSWKSSKQTCIARS 154
            T D+KSTSGY+FTLG   VSWKSSKQTCIARS
Sbjct: 589 DTNDTKSTSGYVFTLGGAAVSWKSSKQTCIARS 621

BLAST of Cmc12g0321421 vs. ExPASy TrEMBL
Match: A0A2N9HDE2 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37572 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.3e-58
Identity = 110/153 (71.90%), Postives = 131/153 (85.62%), Query Frame = 0

Query: 1   MLSQSHYVDTILKKYKKHDIVIAKTPIDASLHLGKNNGDSIAQLEYSRIIGSLMYIMSCT 60
           +LSQSHY+  +L+K+ ++D    KTP+D +LHL KN G+ I+QLEYS+IIGSLMYIM+CT
Sbjct: 752 VLSQSHYIKKVLEKFGRYDDSPVKTPVDVNLHLTKNKGNGISQLEYSQIIGSLMYIMNCT 811

Query: 61  RPDIASVVSKLSCYTSNPGQDHWKAILRILGYLKHTKNYGLHYSCYPAVLEGYSDANWIS 120
           RPDIA  VSKLS YTSNPG+DHWKAI+R+L YLK+T NYG+HY+ YPAVLEGYSDANWIS
Sbjct: 812 RPDIAYSVSKLSRYTSNPGEDHWKAIVRVLRYLKYTLNYGVHYTRYPAVLEGYSDANWIS 871

Query: 121 STKDSKSTSGYIFTLGSEVVSWKSSKQTCIARS 154
            T D+KSTSGY+FTLG   VSWKSSKQTCIARS
Sbjct: 872 DTNDTKSTSGYVFTLGGAAVSWKSSKQTCIARS 904

BLAST of Cmc12g0321421 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-17
Identity = 50/133 (37.59%), Postives = 80/133 (60.15%), Query Frame = 0

Query: 23  AKTPIDASLHLGKNN-GDSIAQLEYSRIIGSLMYIMSCTRPDIASVVSKLSCYTSNPGQD 82
           +  P+D S+    ++ GD +    Y R+IG LMY +  TR DI+  V+KLS ++  P   
Sbjct: 354 SSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMY-LQITRLDISFAVNKLSQFSEAPRLA 413

Query: 83  HWKAILRILGYLKHTKNYGLHYSCYPAV-LEGYSDANWISSTKDSKSTSGYIFTLGSEVV 142
           H +A+++IL Y+K T   GL YS    + L+ +SDA++ S     +ST+GY   LG+ ++
Sbjct: 414 HQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLI 473

Query: 143 SWKSSKQTCIARS 154
           SWKS KQ  +++S
Sbjct: 474 SWKSKKQQVVSKS 485

BLAST of Cmc12g0321421 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 68.2 bits (165), Expect = 6.9e-12
Identity = 41/153 (26.80%), Postives = 76/153 (49.67%), Query Frame = 0

Query: 2   LSQSHYVDTILKKYKKHDIVIAKTPIDASLHLGKNNGDSIAQLEYSRIIGSLMYIMSCTR 61
           LSQ+ Y + IL      D     TP+   L+   +        ++  I+G+L Y ++ TR
Sbjct: 56  LSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQY-LTLTR 115

Query: 62  PDIASVVSKLSCYTSNPGQDHWKAILRILGYLKHTKNYGLH-YSCYPAVLEGYSDANWIS 121
           PDI+  V+ +      P    +  + R+L Y+K T  +GL+ +      ++ + D++W  
Sbjct: 116 PDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAG 175

Query: 122 STKDSKSTSGYIFTLGSEVVSWKSSKQTCIARS 154
            T   +ST+G+   LG  ++SW + +Q  ++RS
Sbjct: 176 CTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRS 207

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
WP_140189331.11.6e-5872.37DDE-type integrase/transposase/recombinase [Xylella fastidiosa] >TNW01020.1 hypo... [more]
RVW67960.17.8e-5871.90Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
PSR86206.13.9e-5771.05Endonuclease [Actinidia chinensis var. chinensis][more]
PSS35063.13.9e-5771.05Endonuclease [Actinidia chinensis var. chinensis][more]
RVW43864.11.5e-5670.59Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
P109789.1e-2536.48Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P0CV726.1e-2144.95Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P... [more]
P041462.0e-1934.62Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Q9ZT944.4e-1937.66Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW21.8e-1737.01Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
A0A2N9F8T05.8e-5972.55Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
A0A2N9F5X31.0e-5872.55Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
A0A2N9GPK31.0e-5872.55Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
A0A2N9GUH41.3e-5871.90Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
A0A2N9HDE21.3e-5871.90Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
Match NameE-valueIdentityDescription
AT4G23160.11.1e-1737.59cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00810.16.9e-1226.80DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 39..135
NoneNo IPR availablePANTHERPTHR11439:SF308SUBFAMILY NOT NAMEDcoord: 39..135

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc12g0321421.1Cmc12g0321421.1mRNA