Cmc12g0321291 (gene) Melon (Charmono) v1.1

Overview
NameCmc12g0321291
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionUnknown protein
LocationCMiso1.1chr12: 8342998 .. 8344261 (+)
RNA-Seq ExpressionCmc12g0321291
SyntenyCmc12g0321291
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTATTTATTATAATTCTTAAAAAATTTAAGAAAAATAATAGGGCATCTTTTCAGATCAAAATTGCCCAATAAATTATAATATTGAACGAACAACAGATAAAAAAAAAGTACCAATATTGAATAATTAATTAAAAAAAGTATAAAATATTTCTATCCTTCTCGTGAAATTCAAAATACAAAATATTCCGAATTACAGATATGAAAAAAAAAAAACGATGATCGGAGCGATCGAAACACCGCCGAGATAGGGCGGCCAAACGGCGGAAAAATTAACAGAGGAAGAGGAAAGGATCAAAAATTTTGGTGGAAGAGAGATGGAAAGTCTTACTCATGGAAGGAATTGGTATATTCTATTGGAATATTCCGAGATTTTTTTGTTTGTTTTTCGAAATAATTGTTCTTCGTGTTTGTTCAAATTCAATCCCAATCCAATCAAATCAATCTTCGAATCCAGTTTTTTGCCAAATCGCATCTCGAACTCTGCTCAGATCTCTTCCTTTCAACGTTCTTCCAATTCCTTCATGAACCGAAAACGAAGCAATCCTCGTCTTCGCCAGAAATTCATGTGGCGGAACCCTAAATCGCTTTTCCTCGAACTCATCGCCGTCGTCGTCGCCGTCTTCATCCTCGAAGTCATCCCTCCGATTCTCGATATACTCGTTTCTCAGAATCTTCGACCAATCAGGGATGTTAACCGGCAGAGAGGCGGCGGAAACCGTCGTAACGCTACGGTCTCCGACGTCGACGGGAGAAATCCGCTTTGAGATTCGTGATTTGGAAGCCGGACGACGGAACTCCGGGGAGGTTCCGGAGTGCGGAGAGTTGAAGAGGTCGGACTCGTCGAAATCGAAAGCGGCGTCGCTACGGCAGTGGTCAGGTCCGTCACCGGCGGGAAGAAACCGGAACTTGGAGCGAGAGAAGTAACTCTTACCAGTTGCCATCAAAAGGGGAAAGAGAAAATGAAAAAAAAAAAAAAGAATTAAAAACTCCCTCTGTCTGAATTGTGTTTGGATTTGTTGAATTGAAATGGAGGGATTTTGAAATTTTGGGGGAGTTGAGATGGTTAAAGAGGAATGGACATTTTGAGGGCTTTTAAAAAGTTTTTGGGGGGGGGGGGTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGTAATAAAGAAGTGGATAAGATTTTGGTGCAAAATTACCAAAAACTCCTTGGGTTTTTTATTTTTCATTTAGTTCCATGGGAAATTGACAATTTTATAGAATTTTGGAATTTATAATA

mRNA sequence

GTATTTATTATAATTCTTAAAAAATTTAAGAAAAATAATAGGGCATCTTTTCAGATCAAAATTGCCCAATAAATTATAATATTGAACGAACAACAGATAAAAAAAAAGTACCAATATTGAATAATTAATTAAAAAAAGTATAAAATATTTCTATCCTTCTCGTGAAATTCAAAATACAAAATATTCCGAATTACAGATATGAAAAAAAAAAAACGATGATCGGAGCGATCGAAACACCGCCGAGATAGGGCGGCCAAACGGCGGAAAAATTAACAGAGGAAGAGGAAAGGATCAAAAATTTTGGTGGAAGAGAGATGGAAAGTCTTACTCATGGAAGGAATTGGTATATTCTATTGGAATATTCCGAGATTTTTTTGTTTGTTTTTCGAAATAATTGTTCTTCGTGTTTGTTCAAATTCAATCCCAATCCAATCAAATCAATCTTCGAATCCAGTTTTTTGCCAAATCGCATCTCGAACTCTGCTCAGATCTCTTCCTTTCAACGTTCTTCCAATTCCTTCATGAACCGAAAACGAAGCAATCCTCGTCTTCGCCAGAAATTCATGTGGCGGAACCCTAAATCGCTTTTCCTCGAACTCATCGCCGTCGTCGTCGCCGTCTTCATCCTCGAAGTCATCCCTCCGATTCTCGATATACTCGTTTCTCAGAATCTTCGACCAATCAGGGATGTTAACCGGCAGAGAGGCGGCGGAAACCGTCGTAACGCTACGGTCTCCGACGTCGACGGGAGAAATCCGCTTTGAGATTCGTGATTTGGAAGCCGGACGACGGAACTCCGGGGAGGTTCCGGAGTGCGGAGAGTTGAAGAGGTCGGACTCGTCGAAATCGAAAGCGGCGTCGCTACGGCAGTGGTCAGGTCCGTCACCGGCGGGAAGAAACCGGAACTTGGAGCGAGAGAAGTAACTCTTACCAGTTGCCATCAAAAGGGGAAAGAGAAAATGAAAAAAAAAAAAAAGAATTAAAAACTCCCTCTGTCTGAATTGTGTTTGGATTTGTTGAATTGAAATGGAGGGATTTTGAAATTTTGGGGGAGTTGAGATGGTTAAAGAGGAATGGACATTTTGAGGGCTTTTAAAAAGTTTTTGGGGGGGGGGGGTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGTAATAAAGAAGTGGATAAGATTTTGGTGCAAAATTACCAAAAACTCCTTGGGTTTTTTATTTTTCATTTAGTTCCATGGGAAATTGACAATTTTATAGAATTTTGGAATTTATAATA

Coding sequence (CDS)

ATGGAAAGTCTTACTCATGGAAGGAATTGGTATATTCTATTGGAATATTCCGAGATTTTTTTGTTTGTTTTTCGAAATAATTGTTCTTCGTGTTTGTTCAAATTCAATCCCAATCCAATCAAATCAATCTTCGAATCCAGTTTTTTGCCAAATCGCATCTCGAACTCTGCTCAGATCTCTTCCTTTCAACGTTCTTCCAATTCCTTCATGAACCGAAAACGAAGCAATCCTCGTCTTCGCCAGAAATTCATGTGGCGGAACCCTAAATCGCTTTTCCTCGAACTCATCGCCGTCGTCGTCGCCGTCTTCATCCTCGAAGTCATCCCTCCGATTCTCGATATACTCGTTTCTCAGAATCTTCGACCAATCAGGGATGTTAACCGGCAGAGAGGCGGCGGAAACCGTCGTAACGCTACGGTCTCCGACGTCGACGGGAGAAATCCGCTTTGA

Protein sequence

MESLTHGRNWYILLEYSEIFLFVFRNNCSSCLFKFNPNPIKSIFESSFLPNRISNSAQISSFQRSSNSFMNRKRSNPRLRQKFMWRNPKSLFLELIAVVVAVFILEVIPPILDILVSQNLRPIRDVNRQRGGGNRRNATVSDVDGRNPL
Homology
[Close]
BLAST of Cmc12g0321291 vs. NCBI nr
Match: CDP19831.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-08
Identity = 47/98 (47.96%), Postives = 63/98 (64.29%), Query Frame = 0 

Query: 38  NPIKSIFESSFLPNRISNSAQISSFQRSSNSFMNRKRSNPRLR----QKFMWRNP-KSLF 97
           N +KSI E SF PN ISN  +IS FQ   NSF++R+R + R R    QK + RNP  +  
Sbjct: 24  NVLKSILEPSFFPNCISNPTKISPFQSPPNSFVHRERCDSRSRQLSSQKLVRRNPFPTDV 83

Query: 98  LELIAVVVAVFILEVIPPILDILVSQNLRPIRDVNRQR 131
           L ++AV + +F +   PPIL IL+ Q LRP+R V+RQR
Sbjct: 84  LPIVAVEIIIFTIS--PPILPILIFQYLRPVRHVHRQR 119

[Close]
BLAST of Cmc12g0321291 vs. NCBI nr
Match: KHN21517.1 (hypothetical protein glysoja_021097 [Glycine soja])

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-07
Identity = 41/90 (45.56%), Postives = 63/90 (70.00%), Query Frame = 0 

Query: 43  IFESSFLPNRISNSAQISSFQRSSNSFMNRKRSNPRLRQKFMWR-NPKSLFLELIAVVVA 102
           + ES F PNR+SN  +I+SF+   NSF++R+RS+ R RQK + R +P S+FL     VV 
Sbjct: 11  VLESRFSPNRVSNPTEIASFESPPNSFVHRERSDSRPRQKLVRRHSPNSIFLIAPRFVVV 70

Query: 103 VFILEVIPPIL-DILVSQNLRPIRDVNRQR 131
           V    V+PP++  +L+++NLRP+R V+R+R
Sbjct: 71  V----VVPPLVPSVLIAENLRPVRHVHRKR 96

[Close]
BLAST of Cmc12g0321291 vs. ExPASy TrEMBL
Match: A0A068VGI4 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00002617001 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 47/98 (47.96%), Postives = 63/98 (64.29%), Query Frame = 0 

Query: 38  NPIKSIFESSFLPNRISNSAQISSFQRSSNSFMNRKRSNPRLR----QKFMWRNP-KSLF 97
           N +KSI E SF PN ISN  +IS FQ   NSF++R+R + R R    QK + RNP  +  
Sbjct: 24  NVLKSILEPSFFPNCISNPTKISPFQSPPNSFVHRERCDSRSRQLSSQKLVRRNPFPTDV 83

Query: 98  LELIAVVVAVFILEVIPPILDILVSQNLRPIRDVNRQR 131
           L ++AV + +F +   PPIL IL+ Q LRP+R V+RQR
Sbjct: 84  LPIVAVEIIIFTIS--PPILPILIFQYLRPVRHVHRQR 119

The following BLAST results are available for this feature:
BLAST of Cmc12g0321291 vs. NCBI nr
Match NameE-valueIdentityDescription
CDP19831.12.4e-0847.96unnamed protein product [Coffea canephora][more]
KHN21517.12.0e-0745.56hypothetical protein glysoja_021097 [Glycine soja][more]
BLAST of Cmc12g0321291 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc12g0321291 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A068VGI41.2e-0847.96Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00002617001 PE=4 ... [more]
BLAST of Cmc12g0321291 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..149

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc12g0321291.1Cmc12g0321291.1mRNA