Cmc12g0320901 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc12g0320901
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr12: 7659200 .. 7659913 (+)
RNA-Seq Expression	Cmc12g0320901
Synteny	Cmc12g0320901

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGCTAGTAAACTACTCAGCCAGGGTACCTGGAGCATCTTGGCAAGCGTAGTAGATACCAGAGAACCAGAAGTTTTCCTATTCTCTGAATCAGTGGTAAAGGAGTACCCCAATGTTTTCCCCGACGAACTTCCAGGACTTTCGCCTCCTAGGAAGATAGACTTCGCCATCGAGTTAGAGTCGATCACTGCTTCTATCTCGAGGGCCCCTTACAGAATGGCTCCAGCTGAGCTAAAGGAGCTGAAGGTGCAGTTGCAGGAGTTACTGGACAAGGGTTTTATTCGACCCAGTGTGTCACCTTGGAGAGCACCAGTGTTGTTTGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGACTACAGGGAGCTGAACAATGTGACAGTTAAGAATCGCTATCCCTTGCCCAGGATTGATGATTTGTTCGATCAGTTGCAAGGAGCCACCATCTTTTATAAGATCGACCTACGATCAGGCTACCATCAATTGAGGATCAGGGATAGTGATATTCCTAAGACCGCTTTCCGTTCCAGATATGGACATTACGAGTTCATTGTGATGTCTTTTGGGTTGACTAATACTCATGCGGTATTCATGGACTTGATGAACAGGGTGTTTAAGGATTTCTTAGACACGTTTGTCATAGTTTTCATTAATGACATTTTAATTTACTCCAAGACTGAGGCTGAGCATGAGGAGCATTTGCACTAG

mRNA sequence

ATGAAGGCTAGTAAACTACTCAGCCAGGGTACCTGGAGCATCTTGGCAAGCGTAGTAGATACCAGAGAACCAGAAGTTTTCCTATTCTCTGAATCAGTGGTAAAGGAGTACCCCAATGTTTTCCCCGACGAACTTCCAGGACTTTCGCCTCCTAGGAAGATAGACTTCGCCATCGAGTTAGAGTCGATCACTGCTTCTATCTCGAGGGCCCCTTACAGAATGGCTCCAGCTGAGCTAAAGGAGCTGAAGGTGCAGTTGCAGGAGTTACTGGACAAGGGTTTTATTCGACCCAGTGTGTCACCTTGGAGAGCACCAGTGTTGTTTGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGACTACAGGGAGCTGAACAATGTGACAGTTAAGAATCGCTATCCCTTGCCCAGGATTGATGATTTGTTCGATCAGTTGCAAGGAGCCACCATCTTTTATAAGATCGACCTACGATCAGGCTACCATCAATTGAGGATCAGGGATAGTGATATTCCTAAGACCGCTTTCCGTTCCAGATATGGACATTACGAGTTCATTGTGATGTCTTTTGGGTTGACTAATACTCATGCGGTATTCATGGACTTGATGAACAGGGTGTTTAAGGATTTCTTAGACACGTTTGTCATAGTTTTCATTAATGACATTTTAATTTACTCCAAGACTGAGGCTGAGCATGAGGAGCATTTGCACTAG

Coding sequence (CDS)

ATGAAGGCTAGTAAACTACTCAGCCAGGGTACCTGGAGCATCTTGGCAAGCGTAGTAGATACCAGAGAACCAGAAGTTTTCCTATTCTCTGAATCAGTGGTAAAGGAGTACCCCAATGTTTTCCCCGACGAACTTCCAGGACTTTCGCCTCCTAGGAAGATAGACTTCGCCATCGAGTTAGAGTCGATCACTGCTTCTATCTCGAGGGCCCCTTACAGAATGGCTCCAGCTGAGCTAAAGGAGCTGAAGGTGCAGTTGCAGGAGTTACTGGACAAGGGTTTTATTCGACCCAGTGTGTCACCTTGGAGAGCACCAGTGTTGTTTGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGACTACAGGGAGCTGAACAATGTGACAGTTAAGAATCGCTATCCCTTGCCCAGGATTGATGATTTGTTCGATCAGTTGCAAGGAGCCACCATCTTTTATAAGATCGACCTACGATCAGGCTACCATCAATTGAGGATCAGGGATAGTGATATTCCTAAGACCGCTTTCCGTTCCAGATATGGACATTACGAGTTCATTGTGATGTCTTTTGGGTTGACTAATACTCATGCGGTATTCATGGACTTGATGAACAGGGTGTTTAAGGATTTCTTAGACACGTTTGTCATAGTTTTCATTAATGACATTTTAATTTACTCCAAGACTGAGGCTGAGCATGAGGAGCATTTGCACTAG

Protein sequence

MKASKLLSQGTWSILASVVDTREPEVFLFSESVVKEYPNVFPDELPGLSPPRKIDFAIELESITASISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWRAPVLFVKKKDGSMRLCIDYRELNNVTVKNRYPLPRIDDLFDQLQGATIFYKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNTHAVFMDLMNRVFKDFLDTFVIVFINDILIYSKTEAEHEEHLH

Homology

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BLAST of Cmc12g0320901 vs. NCBI nr
Match: KAA0050727.1 (pol protein [Cucumis melo var. makuwa] >TYJ95692.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 433.3 bits (1113), Expect = 1.3e-117
Identity = 217/237 (91.56%), Postives = 224/237 (94.51%), Query Frame = 0


Query: 1   MKASKLLSQGTWSILASVVDTREPEVFLFSESVVKEYPNVFPDELPGLSPPRKIDFAIEL 60
           MKASKLL+QGTW ILASVVDTREPEV L SE VV+EYPNVFPDELPGLSPPR+IDFAIEL
Sbjct: 1   MKASKLLNQGTWGILASVVDTREPEVSLSSEPVVREYPNVFPDELPGLSPPREIDFAIEL 60

Query: 61  ESITASISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWRAPVLFVKKKDGSMRLCI 120
           E  TA ISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPW APVLFVKKKDGSMRLCI
Sbjct: 61  EPDTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 120

Query: 121 DYRELNNVTVKNRYPLPRIDDLFDQLQGATIFYKIDLRSGYHQLRIRDSDIPKTAFRSRY 180
           DYRELN +TVKNRYPLPRIDDLFDQLQ AT+F KIDLRSGYHQLRIRDSDIPKTAFRSRY
Sbjct: 121 DYRELNKLTVKNRYPLPRIDDLFDQLQEATVFSKIDLRSGYHQLRIRDSDIPKTAFRSRY 180

Query: 181 GHYEFIVMSFGLTNTHAVFMDLMNRVFKDFLDTFVIVFINDILIYSKTEAEHEEHLH 238
           GHYEFIVMSFGLTN  AVFMDLMNRVFKDFLD+FVIVFI+DILIYSKTEAEHEEHLH
Sbjct: 181 GHYEFIVMSFGLTNALAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLH 237

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BLAST of Cmc12g0320901 vs. NCBI nr
Match: KAA0043063.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 433.0 bits (1112), Expect = 1.7e-117
Identity = 215/237 (90.72%), Postives = 223/237 (94.09%), Query Frame = 0


Query: 1   MKASKLLSQGTWSILASVVDTREPEVFLFSESVVKEYPNVFPDELPGLSPPRKIDFAIEL 60
           MKASKLLSQGTW ILASVVD REPEV L SE VV+EYP+VFPDELPGL PPR++DFAIEL
Sbjct: 413 MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 472

Query: 61  ESITASISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWRAPVLFVKKKDGSMRLCI 120
           E  TA ISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWRAPVLFVKKKDGSMRLCI
Sbjct: 473 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWRAPVLFVKKKDGSMRLCI 532

Query: 121 DYRELNNVTVKNRYPLPRIDDLFDQLQGATIFYKIDLRSGYHQLRIRDSDIPKTAFRSRY 180
           DYRELN VTVKNRYPLPRIDDLFDQLQGAT+F KIDLRSGYHQLRIRD DIPKTAFRSRY
Sbjct: 533 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRY 592

Query: 181 GHYEFIVMSFGLTNTHAVFMDLMNRVFKDFLDTFVIVFINDILIYSKTEAEHEEHLH 238
           GHYEF+VMSFGLTN  AVFMDLMNRVFKDFLD+FVIVFI+DILIYSKTEAEHEEHLH
Sbjct: 593 GHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLH 649

[Close]

BLAST of Cmc12g0320901 vs. NCBI nr
Match: TYK20443.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 430.6 bits (1106), Expect = 8.5e-117
Identity = 214/237 (90.30%), Postives = 222/237 (93.67%), Query Frame = 0


Query: 1    MKASKLLSQGTWSILASVVDTREPEVFLFSESVVKEYPNVFPDELPGLSPPRKIDFAIEL 60
            MKASKLLSQGTW ILASVVD REPEV L SE VV+EYP+VFPDELPGL PPR++DFAIEL
Sbjct: 862  MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 921

Query: 61   ESITASISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWRAPVLFVKKKDGSMRLCI 120
            E  TA ISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPW APVLFVKKKDGSMRLCI
Sbjct: 922  EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 981

Query: 121  DYRELNNVTVKNRYPLPRIDDLFDQLQGATIFYKIDLRSGYHQLRIRDSDIPKTAFRSRY 180
            DYRELN VTVKNRYPLPRIDDLFDQLQGAT+F KIDLRSGYHQLRIRD DIPKTAFRSRY
Sbjct: 982  DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRY 1041

Query: 181  GHYEFIVMSFGLTNTHAVFMDLMNRVFKDFLDTFVIVFINDILIYSKTEAEHEEHLH 238
            GHYEF+VMSFGLTN  AVFMDLMNRVFKDFLD+FVIVFI+DILIYSKTEAEHEEHLH
Sbjct: 1042 GHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLH 1098

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BLAST of Cmc12g0320901 vs. NCBI nr
Match: KAA0025998.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 430.6 bits (1106), Expect = 8.5e-117
Identity = 214/237 (90.30%), Postives = 222/237 (93.67%), Query Frame = 0


Query: 1   MKASKLLSQGTWSILASVVDTREPEVFLFSESVVKEYPNVFPDELPGLSPPRKIDFAIEL 60
           MKASKLLSQGTW ILASVVD REPEV L SE VV+EYP+VFPDELPGL PPR++DFAIEL
Sbjct: 526 MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 585

Query: 61  ESITASISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWRAPVLFVKKKDGSMRLCI 120
           E  TA ISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPW APVLFVKKKDGSMRLCI
Sbjct: 586 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 645

Query: 121 DYRELNNVTVKNRYPLPRIDDLFDQLQGATIFYKIDLRSGYHQLRIRDSDIPKTAFRSRY 180
           DYRELN VTVKNRYPLPRIDDLFDQLQGAT+F KIDLRSGYHQLRIRD DIPKTAFRSRY
Sbjct: 646 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRY 705

Query: 181 GHYEFIVMSFGLTNTHAVFMDLMNRVFKDFLDTFVIVFINDILIYSKTEAEHEEHLH 238
           GHYEF+VMSFGLTN  AVFMDLMNRVFKDFLD+FVIVFI+DILIYSKTEAEHEEHLH
Sbjct: 706 GHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLH 762

[Close]

BLAST of Cmc12g0320901 vs. NCBI nr
Match: TYK01576.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 430.6 bits (1106), Expect = 8.5e-117
Identity = 214/237 (90.30%), Postives = 222/237 (93.67%), Query Frame = 0


Query: 1    MKASKLLSQGTWSILASVVDTREPEVFLFSESVVKEYPNVFPDELPGLSPPRKIDFAIEL 60
            MKASKLLSQGTW ILASVVD REPEV L SE VV+EYP+VFPDELPGL PPR++DFAIEL
Sbjct: 863  MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 922

Query: 61   ESITASISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWRAPVLFVKKKDGSMRLCI 120
            E  TA ISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPW APVLFVKKKDGSMRLCI
Sbjct: 923  EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 982

Query: 121  DYRELNNVTVKNRYPLPRIDDLFDQLQGATIFYKIDLRSGYHQLRIRDSDIPKTAFRSRY 180
            DYRELN VTVKNRYPLPRIDDLFDQLQGAT+F KIDLRSGYHQLRIRD DIPKTAFRSRY
Sbjct: 983  DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRY 1042

Query: 181  GHYEFIVMSFGLTNTHAVFMDLMNRVFKDFLDTFVIVFINDILIYSKTEAEHEEHLH 238
            GHYEF+VMSFGLTN  AVFMDLMNRVFKDFLD+FVIVFI+DILIYSKTEAEHEEHLH
Sbjct: 1043 GHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLH 1099

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BLAST of Cmc12g0320901 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 152.9 bits (385), Expect = 4.5e-36
Identity = 93/251 (37.05%), Postives = 135/251 (53.78%), Query Frame = 0


Query: 2   KASKLLSQGTWSILASVVDTREPEVFLFSES---------VVKEYPNVFPDELPGLSPPR 61
           +AS L   G +S + S + + EP     S           + ++Y  +  ++L    PPR
Sbjct: 520 EASILEEDGKYSNVVSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDL----PPR 579

Query: 62  KIDF-------AIELESITASISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWRAP 121
             D         IE++         PY +     +E+   +Q+LLD  FI PS SP  +P
Sbjct: 580 PADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSP 639

Query: 122 VLFVKKKDGSMRLCIDYRELNNVTVKNRYPLPRIDDLFDQLQGATIFYKIDLRSGYHQLR 181
           V+ V KKDG+ RLC+DYR LN  T+ + +PLPRID+L  ++  A IF  +DL SGYHQ+ 
Sbjct: 640 VVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIP 699

Query: 182 IRDSDIPKTAFRSRYGHYEFIVMSFGLTNTHAVFMDLMNRVFKDFLDTFVIVFINDILIY 237
           +   D  KTAF +  G YE+ VM FGL N  + F   M   F+D    FV V+++DILI+
Sbjct: 700 MEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIF 759

[Close]

BLAST of Cmc12g0320901 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 152.9 bits (385), Expect = 4.5e-36
Identity = 93/251 (37.05%), Postives = 135/251 (53.78%), Query Frame = 0


Query: 2   KASKLLSQGTWSILASVVDTREPEVFLFSES---------VVKEYPNVFPDELPGLSPPR 61
           +AS L   G +S + S + + EP     S           + ++Y  +  ++L    PPR
Sbjct: 546 EASILEEDGKYSNVVSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDL----PPR 605

Query: 62  KIDF-------AIELESITASISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWRAP 121
             D         IE++         PY +     +E+   +Q+LLD  FI PS SP  +P
Sbjct: 606 PADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSP 665

Query: 122 VLFVKKKDGSMRLCIDYRELNNVTVKNRYPLPRIDDLFDQLQGATIFYKIDLRSGYHQLR 181
           V+ V KKDG+ RLC+DYR LN  T+ + +PLPRID+L  ++  A IF  +DL SGYHQ+ 
Sbjct: 666 VVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIP 725

Query: 182 IRDSDIPKTAFRSRYGHYEFIVMSFGLTNTHAVFMDLMNRVFKDFLDTFVIVFINDILIY 237
           +   D  KTAF +  G YE+ VM FGL N  + F   M   F+D    FV V+++DILI+
Sbjct: 726 MEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIF 785

[Close]

BLAST of Cmc12g0320901 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.7e-33
Identity = 70/125 (56.00%), Postives = 92/125 (73.60%), Query Frame = 0


Query: 115 SMRLCIDYRELNNVTVKNRYPLPRIDDLFDQLQGATIFYKIDLRSGYHQLRIRDSDIPKT 174
           S+R+CIDYR L  VT+KN+YP+PR+DDLFD+L  AT F K+DLRSGY Q+RI   D PKT
Sbjct: 5   SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64

Query: 175 AFRSRYGHYEFIVMSFGLTNTHAVFMDLMNRVFKDFLDTFVIVFINDIL---IYSKTEAE 234
              +RYG +EF VM FGLTN  A F +LMN V  ++LD FV+V+++D++   IYS +  E
Sbjct: 65  TCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHE 124

Query: 235 HEEHL 237
           H +HL
Sbjct: 125 HIKHL 129

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BLAST of Cmc12g0320901 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.7e-33
Identity = 74/219 (33.79%), Postives = 131/219 (59.82%), Query Frame = 0


Query: 22  REPEVFLFSESVVKEYPNVF----PDELPGLSPPRKIDFAIELESITASISRAPYRMAPA 81
           +EPE+      + KE+ ++      ++LP   P + ++F +EL      +    Y + P 
Sbjct: 370 KEPEL----PDIYKEFKDITAETNTEKLP--KPIKGLEFEVELTQENYRLPIRNYPLPPG 429

Query: 82  ELKELKVQLQELLDKGFIRPSVSPWRAPVLFVKKKDGSMRLCIDYRELNNVTVKNRYPLP 141
           +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LN     N YPLP
Sbjct: 430 KMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLP 489

Query: 142 RIDDLFDQLQGATIFYKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNTHA 201
            I+ L  ++QG+TIF K+DL+S YH +R+R  D  K AFR   G +E++VM +G++   A
Sbjct: 490 LIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPA 549

Query: 202 VFMDLMNRVFKDFLDTFVIVFINDILIYSKTEAEHEEHL 237
            F   +N +  +  ++ V+ +++DILI+SK+E+EH +H+
Sbjct: 550 HFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHV 582

[Close]

BLAST of Cmc12g0320901 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.7e-33
Identity = 74/219 (33.79%), Postives = 131/219 (59.82%), Query Frame = 0


Query: 22  REPEVFLFSESVVKEYPNVF----PDELPGLSPPRKIDFAIELESITASISRAPYRMAPA 81
           +EPE+      + KE+ ++      ++LP   P + ++F +EL      +    Y + P 
Sbjct: 370 KEPEL----PDIYKEFKDITAETNTEKLP--KPIKGLEFEVELTQENYRLPIRNYPLPPG 429

Query: 82  ELKELKVQLQELLDKGFIRPSVSPWRAPVLFVKKKDGSMRLCIDYRELNNVTVKNRYPLP 141
           +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LN     N YPLP
Sbjct: 430 KMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLP 489

Query: 142 RIDDLFDQLQGATIFYKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNTHA 201
            I+ L  ++QG+TIF K+DL+S YH +R+R  D  K AFR   G +E++VM +G++   A
Sbjct: 490 LIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPA 549

Query: 202 VFMDLMNRVFKDFLDTFVIVFINDILIYSKTEAEHEEHL 237
            F   +N +  +  ++ V+ +++DILI+SK+E+EH +H+
Sbjct: 550 HFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHV 582

[Close]

BLAST of Cmc12g0320901 vs. ExPASy TrEMBL
Match: A0A5D3B768 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00190 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 6.4e-118
Identity = 217/237 (91.56%), Postives = 224/237 (94.51%), Query Frame = 0


Query: 1   MKASKLLSQGTWSILASVVDTREPEVFLFSESVVKEYPNVFPDELPGLSPPRKIDFAIEL 60
           MKASKLL+QGTW ILASVVDTREPEV L SE VV+EYPNVFPDELPGLSPPR+IDFAIEL
Sbjct: 1   MKASKLLNQGTWGILASVVDTREPEVSLSSEPVVREYPNVFPDELPGLSPPREIDFAIEL 60

Query: 61  ESITASISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWRAPVLFVKKKDGSMRLCI 120
           E  TA ISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPW APVLFVKKKDGSMRLCI
Sbjct: 61  EPDTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 120

Query: 121 DYRELNNVTVKNRYPLPRIDDLFDQLQGATIFYKIDLRSGYHQLRIRDSDIPKTAFRSRY 180
           DYRELN +TVKNRYPLPRIDDLFDQLQ AT+F KIDLRSGYHQLRIRDSDIPKTAFRSRY
Sbjct: 121 DYRELNKLTVKNRYPLPRIDDLFDQLQEATVFSKIDLRSGYHQLRIRDSDIPKTAFRSRY 180

Query: 181 GHYEFIVMSFGLTNTHAVFMDLMNRVFKDFLDTFVIVFINDILIYSKTEAEHEEHLH 238
           GHYEFIVMSFGLTN  AVFMDLMNRVFKDFLD+FVIVFI+DILIYSKTEAEHEEHLH
Sbjct: 181 GHYEFIVMSFGLTNALAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLH 237

[Close]

BLAST of Cmc12g0320901 vs. ExPASy TrEMBL
Match: A0A5A7TI92 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1291G00020 PE=4 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 8.3e-118
Identity = 215/237 (90.72%), Postives = 223/237 (94.09%), Query Frame = 0


Query: 1   MKASKLLSQGTWSILASVVDTREPEVFLFSESVVKEYPNVFPDELPGLSPPRKIDFAIEL 60
           MKASKLLSQGTW ILASVVD REPEV L SE VV+EYP+VFPDELPGL PPR++DFAIEL
Sbjct: 413 MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 472

Query: 61  ESITASISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWRAPVLFVKKKDGSMRLCI 120
           E  TA ISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWRAPVLFVKKKDGSMRLCI
Sbjct: 473 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWRAPVLFVKKKDGSMRLCI 532

Query: 121 DYRELNNVTVKNRYPLPRIDDLFDQLQGATIFYKIDLRSGYHQLRIRDSDIPKTAFRSRY 180
           DYRELN VTVKNRYPLPRIDDLFDQLQGAT+F KIDLRSGYHQLRIRD DIPKTAFRSRY
Sbjct: 533 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRY 592

Query: 181 GHYEFIVMSFGLTNTHAVFMDLMNRVFKDFLDTFVIVFINDILIYSKTEAEHEEHLH 238
           GHYEF+VMSFGLTN  AVFMDLMNRVFKDFLD+FVIVFI+DILIYSKTEAEHEEHLH
Sbjct: 593 GHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLH 649

[Close]

BLAST of Cmc12g0320901 vs. ExPASy TrEMBL
Match: A0A5D3BTN0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001560 PE=4 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 4.1e-117
Identity = 214/237 (90.30%), Postives = 222/237 (93.67%), Query Frame = 0


Query: 1    MKASKLLSQGTWSILASVVDTREPEVFLFSESVVKEYPNVFPDELPGLSPPRKIDFAIEL 60
            MKASKLLSQGTW ILASVVD REPEV L SE VV+EYP+VFPDELPGL PPR++DFAIEL
Sbjct: 863  MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 922

Query: 61   ESITASISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWRAPVLFVKKKDGSMRLCI 120
            E  TA ISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPW APVLFVKKKDGSMRLCI
Sbjct: 923  EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 982

Query: 121  DYRELNNVTVKNRYPLPRIDDLFDQLQGATIFYKIDLRSGYHQLRIRDSDIPKTAFRSRY 180
            DYRELN VTVKNRYPLPRIDDLFDQLQGAT+F KIDLRSGYHQLRIRD DIPKTAFRSRY
Sbjct: 983  DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRY 1042

Query: 181  GHYEFIVMSFGLTNTHAVFMDLMNRVFKDFLDTFVIVFINDILIYSKTEAEHEEHLH 238
            GHYEF+VMSFGLTN  AVFMDLMNRVFKDFLD+FVIVFI+DILIYSKTEAEHEEHLH
Sbjct: 1043 GHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLH 1099

[Close]

BLAST of Cmc12g0320901 vs. ExPASy TrEMBL
Match: A0A5A7SIJ5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003210 PE=4 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 4.1e-117
Identity = 214/237 (90.30%), Postives = 222/237 (93.67%), Query Frame = 0


Query: 1   MKASKLLSQGTWSILASVVDTREPEVFLFSESVVKEYPNVFPDELPGLSPPRKIDFAIEL 60
           MKASKLLSQGTW ILASVVD REPEV L SE VV+EYP+VFPDELPGL PPR++DFAIEL
Sbjct: 526 MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 585

Query: 61  ESITASISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWRAPVLFVKKKDGSMRLCI 120
           E  TA ISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPW APVLFVKKKDGSMRLCI
Sbjct: 586 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 645

Query: 121 DYRELNNVTVKNRYPLPRIDDLFDQLQGATIFYKIDLRSGYHQLRIRDSDIPKTAFRSRY 180
           DYRELN VTVKNRYPLPRIDDLFDQLQGAT+F KIDLRSGYHQLRIRD DIPKTAFRSRY
Sbjct: 646 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRY 705

Query: 181 GHYEFIVMSFGLTNTHAVFMDLMNRVFKDFLDTFVIVFINDILIYSKTEAEHEEHLH 238
           GHYEF+VMSFGLTN  AVFMDLMNRVFKDFLD+FVIVFI+DILIYSKTEAEHEEHLH
Sbjct: 706 GHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLH 762

[Close]

BLAST of Cmc12g0320901 vs. ExPASy TrEMBL
Match: A0A5D3C6W3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001930 PE=4 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 4.1e-117
Identity = 214/237 (90.30%), Postives = 222/237 (93.67%), Query Frame = 0


Query: 1   MKASKLLSQGTWSILASVVDTREPEVFLFSESVVKEYPNVFPDELPGLSPPRKIDFAIEL 60
           MKASKLLSQGTW ILASVVD REPEV L SE VV+EYP+VFPDELPGL PPR++DFAIEL
Sbjct: 481 MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 540

Query: 61  ESITASISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWRAPVLFVKKKDGSMRLCI 120
           E  TA ISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPW APVLFVKKKDGSMRLCI
Sbjct: 541 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 600

Query: 121 DYRELNNVTVKNRYPLPRIDDLFDQLQGATIFYKIDLRSGYHQLRIRDSDIPKTAFRSRY 180
           DYRELN VTVKNRYPLPRIDDLFDQLQGAT+F KIDLRSGYHQLRIRD DIPKTAFRSRY
Sbjct: 601 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRY 660

Query: 181 GHYEFIVMSFGLTNTHAVFMDLMNRVFKDFLDTFVIVFINDILIYSKTEAEHEEHLH 238
           GHYEF+VMSFGLTN  AVFMDLMNRVFKDFLD+FVIVFI+DILIYSKTEAEHEEHLH
Sbjct: 661 GHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLH 717

The following BLAST results are available for this feature:

BLAST of Cmc12g0320901 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050727.1	1.3e-117	91.56	pol protein [Cucumis melo var. makuwa] >TYJ95692.1 pol protein [Cucumis melo var...	[more]
KAA0043063.1	1.7e-117	90.72	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK20443.1	8.5e-117	90.30	pol protein [Cucumis melo var. makuwa]	[more]
KAA0025998.1	8.5e-117	90.30	pol protein [Cucumis melo var. makuwa]	[more]
TYK01576.1	8.5e-117	90.30	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc12g0320901 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	4.5e-36	37.05	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	4.5e-36	37.05	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P31843	2.7e-33	56.00	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
P0CT41	2.7e-33	33.79	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	2.7e-33	33.79	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc12g0320901 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3B768	6.4e-118	91.56	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00190 PE...	[more]
A0A5A7TI92	8.3e-118	90.72	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold12...	[more]
A0A5D3BTN0	4.1e-117	90.30	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5A7SIJ5	4.1e-117	90.30	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34...	[more]
A0A5D3C6W3	4.1e-117	90.30	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13...	[more]

BLAST of Cmc12g0320901 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 134..237 e-value: 2.7E-73 score: 247.8
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 109..236 e-value: 5.2E-15 score: 55.6
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 55..194 e-value: 2.7E-73 score: 247.8
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 69..237
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 69..237
None	No IPR available	CDD	cd01647	RT_LTR	coord: 93..237 e-value: 2.71477E-75 score: 224.012
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 33..236

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc12g0320901.1	Cmc12g0320901.1	mRNA