Cmc12g0316851 (gene) Melon (Charmono) v1.1

Overview
NameCmc12g0316851
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
LocationCMiso1.1chr12: 1943193 .. 1944086 (-)
RNA-Seq ExpressionCmc12g0316851
SyntenyCmc12g0316851
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGATTTGGGAAATGCACAATATGTTCTTGGTATCCAAATAGTTCGGAATTGTAAGAACAAAACTCTAGCCATGTCTCAAACATCTTATATAGACAAAATGTTGTCAAGACATAAGATGCAGAATTCCAAAAAGGGTCTGCTGCCGTACAGATATGGAATTCATTTATCAAAAGAACAGTGTCCAAAGACATCTCAAGATGTTAAGGATATGAGTAACATTCCCTATGCTTCTGCTCTTGGGAGCCTGATGTATGCAATGTTATGTACTAGACCTGAAATTTGCTATTCAGTAGGGATAGTTAGTAGATATCAGTCCAATCCTGGACGTGATCATTGGACAGCCGTTAAGAATATCCTAAAATATCTTAGAAGAACAAAAGAATACATGCTTGTGTATGGATCTAAGGATCTGATCCTTACTGGATACATTGACTATGATTTTCAAACTGATAAAGATGCTAGAAAGTCTACATCAGGATCAGTTTTTACTCTAAATGGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCCTGTATTACCGACTCCACTATGGAAGATGAATATGTAGCTGCCTATGAAGCAACAAAGGAAGCAGTATGGCTTAAAAAGTTCTTAACAGATTTGGAAGTTGTTCCAAATATGCATATGCCAATCACCTTATATTGTGACAACAGTGGTGTAGTTGCAAATTCACGAGAACCTAGAAGTCATAAACGAGGAAAACACATTGAAAGAAAGTACCATCTGATCAGGGAAATCGTACATCGAGGAGACGTTACAGTAACAAAAGTCTACTCCGAGCAAAACATGGCTGGTCCGTTTACAAAAGCTCTCACGGTTAAAGTGTTTGGGAGCCATCTACCTGGTTTAGCTCTACGTGGTTTGTAA

mRNA sequence

ATGAAAGATTTGGGAAATGCACAATATGTTCTTGGTATCCAAATAGTTCGGAATTGTAAGAACAAAACTCTAGCCATGTCTCAAACATCTTATATAGACAAAATGTTGTCAAGACATAAGATGCAGAATTCCAAAAAGGGTCTGCTGCCGTACAGATATGGAATTCATTTATCAAAAGAACAGTGTCCAAAGACATCTCAAGATGTTAAGGATATGAGTAACATTCCCTATGCTTCTGCTCTTGGGAGCCTGATGTATGCAATGTTATGTACTAGACCTGAAATTTGCTATTCAGTAGGGATAGTTAGTAGATATCAGTCCAATCCTGGACGTGATCATTGGACAGCCGTTAAGAATATCCTAAAATATCTTAGAAGAACAAAAGAATACATGCTTGTGTATGGATCTAAGGATCTGATCCTTACTGGATACATTGACTATGATTTTCAAACTGATAAAGATGCTAGAAAGTCTACATCAGGATCAGTTTTTACTCTAAATGGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCCTGTATTACCGACTCCACTATGGAAGATGAATATGTAGCTGCCTATGAAGCAACAAAGGAAGCAGTATGGCTTAAAAAGTTCTTAACAGATTTGGAAGTTGTTCCAAATATGCATATGCCAATCACCTTATATTGTGACAACAGTGGTGTAGTTGCAAATTCACGAGAACCTAGAAGTCATAAACGAGGAAAACACATTGAAAGAAAGTACCATCTGATCAGGGAAATCGTACATCGAGGAGACGTTACAGTAACAAAAGTCTACTCCGAGCAAAACATGGCTGGTCCGTTTACAAAAGCTCTCACGGTTAAAGTGTTTGGGAGCCATCTACCTGGTTTAGCTCTACGTGGTTTGTAA

Coding sequence (CDS)

ATGAAAGATTTGGGAAATGCACAATATGTTCTTGGTATCCAAATAGTTCGGAATTGTAAGAACAAAACTCTAGCCATGTCTCAAACATCTTATATAGACAAAATGTTGTCAAGACATAAGATGCAGAATTCCAAAAAGGGTCTGCTGCCGTACAGATATGGAATTCATTTATCAAAAGAACAGTGTCCAAAGACATCTCAAGATGTTAAGGATATGAGTAACATTCCCTATGCTTCTGCTCTTGGGAGCCTGATGTATGCAATGTTATGTACTAGACCTGAAATTTGCTATTCAGTAGGGATAGTTAGTAGATATCAGTCCAATCCTGGACGTGATCATTGGACAGCCGTTAAGAATATCCTAAAATATCTTAGAAGAACAAAAGAATACATGCTTGTGTATGGATCTAAGGATCTGATCCTTACTGGATACATTGACTATGATTTTCAAACTGATAAAGATGCTAGAAAGTCTACATCAGGATCAGTTTTTACTCTAAATGGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCCTGTATTACCGACTCCACTATGGAAGATGAATATGTAGCTGCCTATGAAGCAACAAAGGAAGCAGTATGGCTTAAAAAGTTCTTAACAGATTTGGAAGTTGTTCCAAATATGCATATGCCAATCACCTTATATTGTGACAACAGTGGTGTAGTTGCAAATTCACGAGAACCTAGAAGTCATAAACGAGGAAAACACATTGAAAGAAAGTACCATCTGATCAGGGAAATCGTACATCGAGGAGACGTTACAGTAACAAAAGTCTACTCCGAGCAAAACATGGCTGGTCCGTTTACAAAAGCTCTCACGGTTAAAGTGTTTGGGAGCCATCTACCTGGTTTAGCTCTACGTGGTTTGTAA

Protein sequence

MKDLGNAQYVLGIQIVRNCKNKTLAMSQTSYIDKMLSRHKMQNSKKGLLPYRYGIHLSKEQCPKTSQDVKDMSNIPYASALGSLMYAMLCTRPEICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTKEYMLVYGSKDLILTGYIDYDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCITDSTMEDEYVAAYEATKEAVWLKKFLTDLEVVPNMHMPITLYCDNSGVVANSREPRSHKRGKHIERKYHLIREIVHRGDVTVTKVYSEQNMAGPFTKALTVKVFGSHLPGLALRGL
Homology
BLAST of Cmc12g0316851 vs. NCBI nr
Match: KAA0067716.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 603.6 bits (1555), Expect = 9.2e-169
Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0

Query: 1   MKDLGNAQYVLGIQIVRNCKNKTLAMSQTSYIDKMLSRHKMQNSKKGLLPYRYGIHLSKE 60
           MKDLGNAQYVLGIQIVRNCKNKTLAMSQTSYIDKMLSRHKMQNSKKGLLPYRYGIHLSKE
Sbjct: 368 MKDLGNAQYVLGIQIVRNCKNKTLAMSQTSYIDKMLSRHKMQNSKKGLLPYRYGIHLSKE 427

Query: 61  QCPKTSQDVKDMSNIPYASALGSLMYAMLCTRPEICYSVGIVSRYQSNPGRDHWTAVKNI 120
           QCPKTSQDVKDMSNIPYASALGSLMYAMLCTRPEICYSVGIVSRYQSNPGRDHWTAVKNI
Sbjct: 428 QCPKTSQDVKDMSNIPYASALGSLMYAMLCTRPEICYSVGIVSRYQSNPGRDHWTAVKNI 487

Query: 121 LKYLRRTKEYMLVYGSKDLILTGYIDYDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSC 180
           LKYLRRTKEYMLVYGSKDLILTGYIDYDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSC
Sbjct: 488 LKYLRRTKEYMLVYGSKDLILTGYIDYDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSC 547

Query: 181 ITDSTMEDEYVAAYEATKEAVWLKKFLTDLEVVPNMHMPITLYCDNSGVVANSREPRSHK 240
           ITDSTMEDEYVAAYEATKEAVWLKKFLTDLEVVPNMHMPITLYCDNSGVVANSREPRSHK
Sbjct: 548 ITDSTMEDEYVAAYEATKEAVWLKKFLTDLEVVPNMHMPITLYCDNSGVVANSREPRSHK 607

Query: 241 RGKHIERKYHLIREIVHRGDVTVTKVYSEQNMAGPFTKALTVKVFGSHLPGLALRG 297
           RGKHIERKYHLIREIVHRGDVTVTKVYSEQNMAGPFTKALTVKVFGSHLPGLALRG
Sbjct: 608 RGKHIERKYHLIREIVHRGDVTVTKVYSEQNMAGPFTKALTVKVFGSHLPGLALRG 663

BLAST of Cmc12g0316851 vs. NCBI nr
Match: KAA0058854.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 511.1 bits (1315), Expect = 6.2e-141
Identity = 254/297 (85.52%), Postives = 267/297 (89.90%), Query Frame = 0

Query: 1   MKDLGNAQYVLGIQIVRNCKNKTLAMSQTSYIDKMLSRHKMQNSKKGLLPYRYGIHLSKE 60
           MK LGNA YVL IQIVRN KNKTLAMSQTSYIDKMLSR+KMQNSKK LLPYRYGIHLSKE
Sbjct: 413 MKYLGNAPYVLDIQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKCLLPYRYGIHLSKE 472

Query: 61  QCPKTSQDVKDMSNIPYASALGSLMYAMLCTRPEICYSVGIVSRYQSNPGRDHWTAVKNI 120
           QCPKT Q+V+DMSNIPYA A+GSLMYAMLC RP+ICYSV IVS YQSNPGRDHWT VKNI
Sbjct: 473 QCPKTPQEVEDMSNIPYAFAIGSLMYAMLCIRPDICYSVRIVSTYQSNPGRDHWTVVKNI 532

Query: 121 LKYLRRTKEYMLVYGSKDLILTGYIDYDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSC 180
           +KYLRRTK+YM VYGSKDLILT Y D DFQTDKDARKSTSGSVF LNGGAVVWRSIKQSC
Sbjct: 533 IKYLRRTKDYMFVYGSKDLILTRYTDSDFQTDKDARKSTSGSVFILNGGAVVWRSIKQSC 592

Query: 181 ITDSTMEDEYVAAYEATKEAVWLKKFLTDLEVVPNMHMPITLYCDNSGVVANSREPRSHK 240
           I DSTME +YVAA EA KEAVWLKKFLTDLEVVPNM +PITLYCDNSG VANSREPRSHK
Sbjct: 593 IADSTMEVKYVAACEAAKEAVWLKKFLTDLEVVPNMQLPITLYCDNSGAVANSREPRSHK 652

Query: 241 RGKHIERKYHLIREIVHRGDVTVTKVYSEQNMAGPFTKALTVKVFGSHLPGLALRGL 298
            GKHIERKYHLIR+IVHRGDVTVTK+ SE+NMA PF KALT K+F SHL GL LRGL
Sbjct: 653 HGKHIERKYHLIRKIVHRGDVTVTKISSEENMADPFIKALTAKMFESHLHGLGLRGL 709

BLAST of Cmc12g0316851 vs. NCBI nr
Match: TYK23767.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 511.1 bits (1315), Expect = 6.2e-141
Identity = 254/297 (85.52%), Postives = 267/297 (89.90%), Query Frame = 0

Query: 1   MKDLGNAQYVLGIQIVRNCKNKTLAMSQTSYIDKMLSRHKMQNSKKGLLPYRYGIHLSKE 60
           MK LGNA YVL IQIVRN KNKTLAMSQTSYIDKMLSR+KMQNSKK LLPYRYGIHLSKE
Sbjct: 287 MKYLGNAPYVLDIQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKCLLPYRYGIHLSKE 346

Query: 61  QCPKTSQDVKDMSNIPYASALGSLMYAMLCTRPEICYSVGIVSRYQSNPGRDHWTAVKNI 120
           QCPKT Q+V+DMSNIPYA A+GSLMYAMLC RP+ICYSV IVS YQSNPGRDHWT VKNI
Sbjct: 347 QCPKTPQEVEDMSNIPYAFAIGSLMYAMLCIRPDICYSVRIVSTYQSNPGRDHWTVVKNI 406

Query: 121 LKYLRRTKEYMLVYGSKDLILTGYIDYDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSC 180
           +KYLRRTK+YM VYGSKDLILT Y D DFQTDKDARKSTSGSVF LNGGAVVWRSIKQSC
Sbjct: 407 IKYLRRTKDYMFVYGSKDLILTRYTDSDFQTDKDARKSTSGSVFILNGGAVVWRSIKQSC 466

Query: 181 ITDSTMEDEYVAAYEATKEAVWLKKFLTDLEVVPNMHMPITLYCDNSGVVANSREPRSHK 240
           I DSTME +YVAA EA KEAVWLKKFLTDLEVVPNM +PITLYCDNSG VANSREPRSHK
Sbjct: 467 IADSTMEVKYVAACEAAKEAVWLKKFLTDLEVVPNMQLPITLYCDNSGAVANSREPRSHK 526

Query: 241 RGKHIERKYHLIREIVHRGDVTVTKVYSEQNMAGPFTKALTVKVFGSHLPGLALRGL 298
            GKHIERKYHLIR+IVHRGDVTVTK+ SE+NMA PF KALT K+F SHL GL LRGL
Sbjct: 527 HGKHIERKYHLIRKIVHRGDVTVTKISSEENMADPFIKALTAKMFESHLHGLGLRGL 583

BLAST of Cmc12g0316851 vs. NCBI nr
Match: KAA0052272.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 510.4 bits (1313), Expect = 1.1e-140
Identity = 249/289 (86.16%), Postives = 266/289 (92.04%), Query Frame = 0

Query: 1   MKDLGNAQYVLGIQIVRNCKNKTLAMSQTSYIDKMLSRHKMQNSKKGLLPYRYGIHLSKE 60
           MKDL NAQYVLGI+IVRN KNKTLAMSQTSYIDKMLSR+KMQNSKK LLPYRYGIHLSKE
Sbjct: 331 MKDLENAQYVLGIEIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKSLLPYRYGIHLSKE 390

Query: 61  QCPKTSQDVKDMSNIPYASALGSLMYAMLCTRPEICYSVGIVSRYQSNPGRDHWTAVKNI 120
           QCPKT Q+VKDMSNIPYASA+GSLMYAMLCTRP+ICYSVGIVSRYQSNPG DHWTAVKNI
Sbjct: 391 QCPKTPQEVKDMSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGSDHWTAVKNI 450

Query: 121 LKYLRRTKEYMLVYGSKDLILTGYIDYDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSC 180
           LKYLRRTK+YMLVYGSKDLILT Y D DFQ+DKD RKSTS SVFTLNG AVVW+ IKQSC
Sbjct: 451 LKYLRRTKDYMLVYGSKDLILTRYTDSDFQSDKDVRKSTSESVFTLNGEAVVWKRIKQSC 510

Query: 181 ITDSTMEDEYVAAYEATKEAVWLKKFLTDLEVVPNMHMPITLYCDNSGVVANSREPRSHK 240
           I DSTME EYVA+ EA KEAVWLKKFLTDLE+VPN+H+PITLYCDNSG VANS+EPRSHK
Sbjct: 511 IADSTMEAEYVASCEAAKEAVWLKKFLTDLEIVPNIHLPITLYCDNSGAVANSQEPRSHK 570

Query: 241 RGKHIERKYHLIREIVHRGDVTVTKVYSEQNMAGPFTKALTVKVFGSHL 290
           R KHIERKYHLIREI+HRGDVT+TK+ SEQN+  PFTKALT KVF SHL
Sbjct: 571 RRKHIERKYHLIREIIHRGDVTITKISSEQNITDPFTKALTAKVFESHL 619

BLAST of Cmc12g0316851 vs. NCBI nr
Match: KAA0033024.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK03441.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 503.4 bits (1295), Expect = 1.3e-138
Identity = 251/297 (84.51%), Postives = 266/297 (89.56%), Query Frame = 0

Query: 1   MKDLGNAQYVLGIQIVRNCKNKTLAMSQTSYIDKMLSRHKMQNSKKGLLPYRYGIHLSKE 60
           MKDLGNAQYVLG QIVRN KNKTLAMSQTSYIDKMLSR+KMQNSKKGLL YRYGIHLSKE
Sbjct: 67  MKDLGNAQYVLGNQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKGLLLYRYGIHLSKE 126

Query: 61  QCPKTSQDVKDMSNIPYASALGSLMYAMLCTRPEICYSVGIVSRYQSNPGRDHWTAVKNI 120
           QCPKT Q+V+DMSNIPYAS   SLMYAMLCTR +ICYSV IVSRYQSNPGRDHWT VKNI
Sbjct: 127 QCPKTPQEVEDMSNIPYASPAESLMYAMLCTRSDICYSVEIVSRYQSNPGRDHWTVVKNI 186

Query: 121 LKYLRRTKEYMLVYGSKDLILTGYIDYDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSC 180
           LKYLRRTK+YMLVYGS+DLILTGY + DFQTDKDARKSTS SVFTLN GAV WRSIKQSC
Sbjct: 187 LKYLRRTKDYMLVYGSRDLILTGYTNSDFQTDKDARKSTSRSVFTLNEGAVAWRSIKQSC 246

Query: 181 ITDSTMEDEYVAAYEATKEAVWLKKFLTDLEVVPNMHMPITLYCDNSGVVANSREPRSHK 240
           ITDS +E +YV A EA KEAVWLKKFLTDLEVVPNM +PITLYCDNSG VANSREPRSHK
Sbjct: 247 ITDSIVEAKYVVACEAAKEAVWLKKFLTDLEVVPNMDLPITLYCDNSGAVANSREPRSHK 306

Query: 241 RGKHIERKYHLIREIVHRGDVTVTKVYSEQNMAGPFTKALTVKVFGSHLPGLALRGL 298
           +GKHIE+K+HLIREIVHRGDVT+TK+  EQNMA PFTKALT KVF SHL GL L  L
Sbjct: 307 QGKHIEQKHHLIREIVHRGDVTITKISFEQNMADPFTKALTTKVFESHLHGLGLSSL 363

BLAST of Cmc12g0316851 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 2.6e-65
Identity = 126/280 (45.00%), Postives = 182/280 (65.00%), Query Frame = 0

Query: 1    MKDLGNAQYVLGIQIVRNCKNKTLAMSQTSYIDKMLSRHKMQNSKKGLLPYRYGIHLSKE 60
            MKDLG AQ +LG++IVR   ++ L +SQ  YI+++L R  M+N+K    P    + LSK+
Sbjct: 1035 MKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKK 1094

Query: 61   QCPKTSQDVKDMSNIPYASALGSLMYAMLCTRPEICYSVGIVSRYQSNPGRDHWTAVKNI 120
             CP T ++  +M+ +PY+SA+GSLMYAM+CTRP+I ++VG+VSR+  NPG++HW AVK I
Sbjct: 1095 MCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWI 1154

Query: 121  LKYLRRTKEYMLVYGSKDLILTGYIDYDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSC 180
            L+YLR T    L +G  D IL GY D D   D D RKS++G +FT +GGA+ W+S  Q C
Sbjct: 1155 LRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKC 1214

Query: 181  ITDSTMEDEYVAAYEATKEAVWLKKFLTDLEVVPNMHMPITLYCDNSGVVANSREPRSHK 240
            +  ST E EY+AA E  KE +WLK+FL +L +    ++   +YCD+   +  S+    H 
Sbjct: 1215 VALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYV---VYCDSQSAIDLSKNSMYHA 1274

Query: 241  RGKHIERKYHLIREIVHRGDVTVTKVYSEQNMAGPFTKAL 281
            R KHI+ +YH IRE+V    + V K+ + +N A   TK +
Sbjct: 1275 RTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVV 1311

BLAST of Cmc12g0316851 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 166.4 bits (420), Expect = 4.9e-40
Identity = 99/294 (33.67%), Postives = 158/294 (53.74%), Query Frame = 0

Query: 1    MKDLGNAQYVLGIQIVRNCKNKTLAMSQTSYIDKMLSRHKMQNSKKGLLP----YRYGIH 60
            M DL   ++ +GI+I    +   + +SQ++Y+ K+LS+  M+N      P      Y + 
Sbjct: 1114 MTDLNEIKHFIGIRI--EMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELL 1173

Query: 61   LSKEQCPKTSQDVKDMSNIPYASALGSLMYAMLCTRPEICYSVGIVSRYQSNPGRDHWTA 120
             S E C           N P  S +G LMY MLCTRP++  +V I+SRY S    + W  
Sbjct: 1174 NSDEDC-----------NTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQN 1233

Query: 121  VKNILKYLRRTKEYMLVYGSKDLI----LTGYIDYDFQTDKDARKSTSGSVFTL-NGGAV 180
            +K +L+YL+ T +  L++  K+L     + GY+D D+   +  RKST+G +F + +   +
Sbjct: 1234 LKRVLRYLKGTIDMKLIF-KKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLI 1293

Query: 181  VWRSIKQSCITDSTMEDEYVAAYEATKEAVWLKKFLTDLEVVPNMHMPITLYCDNSGVVA 240
             W + +Q+ +  S+ E EY+A +EA +EA+WLK  LT + +   +  PI +Y DN G ++
Sbjct: 1294 CWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINI--KLENPIKIYEDNQGCIS 1353

Query: 241  NSREPRSHKRGKHIERKYHLIREIVHRGDVTVTKVYSEQNMAGPFTKALTVKVF 286
             +  P  HKR KHI+ KYH  RE V    + +  + +E  +A  FTK L    F
Sbjct: 1354 IANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARF 1391

BLAST of Cmc12g0316851 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.0e-30
Identity = 64/133 (48.12%), Postives = 92/133 (69.17%), Query Frame = 0

Query: 72  MSNIPYASALGSLMYAMLCTRPEICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTKEYM 131
           M N+PY SA+G++MY M+ TRP++  +VG++S++ S+P   HW A+K +L+YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 132 LVYGSKDLI-LTGYIDYDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCITDSTMEDEY 191
           L +       L GY D D+  D ++R+STSG +F LNGG V WRS KQ  +  S+ EDEY
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

Query: 192 VAAYEATKEAVWL 204
           +A  EAT+EAVWL
Sbjct: 121 MALSEATQEAVWL 133

BLAST of Cmc12g0316851 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.4e-28
Identity = 88/286 (30.77%), Postives = 130/286 (45.45%), Query Frame = 0

Query: 1    MKDLGNAQYVLGIQIVRNCKNKTLAMSQTSYIDKMLSRHKMQNSKKGLLPYRYGIHLSKE 60
            +K+  +  Y LGI+  R    + L +SQ  Y   +L+R  M  +K    P      L+  
Sbjct: 1160 VKEHEDLHYFLGIEAKR--VPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLH 1219

Query: 61   QCPKTSQDVKDMSNIPYASALGSLMYAMLCTRPEICYSVGIVSRYQSNPGRDHWTAVKNI 120
               K     +      Y   +GSL Y +  TRP++ Y+V  +S+Y   P  DHW A+K +
Sbjct: 1220 SGTKLPDPTE------YRGIVGSLQY-LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRV 1279

Query: 121  LKYLRRTKEY-MLVYGSKDLILTGYIDYDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQS 180
            L+YL  T ++ + +     L L  Y D D+  D D   ST+G +  L    + W S KQ 
Sbjct: 1280 LRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQK 1339

Query: 181  CITDSTMEDEYVAAYEATKEAVWLKKFLTDLEVVPNMHMPITLYCDNSGVVANSREPRSH 240
             +  S+ E EY +    + E  W+   LT+L +   +  P  +YCDN G       P  H
Sbjct: 1340 GVVRSSTEAEYRSVANTSSELQWICSLLTELGI--QLSHPPVIYCDNVGATYLCANPVFH 1399

Query: 241  KRGKHIERKYHLIREIVHRGDVTVTKVYSEQNMAGPFTKALTVKVF 286
             R KHI   YH IR  V  G + V  V +   +A   TK L+   F
Sbjct: 1400 SRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAF 1434

BLAST of Cmc12g0316851 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.7e-27
Identity = 91/286 (31.82%), Postives = 129/286 (45.10%), Query Frame = 0

Query: 1    MKDLGNAQYVLGIQIVRNCKNKTLAMSQTSYIDKMLSRHKMQNSKKGLLPYRYGIHLSKE 60
            +KD     Y LGI+  R      L +SQ  YI  +L+R  M  +K    P      LS  
Sbjct: 1177 VKDHEELHYFLGIEAKR--VPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLY 1236

Query: 61   QCPKTSQDVKDMSNIPYASALGSLMYAMLCTRPEICYSVGIVSRYQSNPGRDHWTAVKNI 120
               K +   +      Y   +GSL Y +  TRP+I Y+V  +S++   P  +H  A+K I
Sbjct: 1237 SGTKLTDPTE------YRGIVGSLQY-LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRI 1296

Query: 121  LKYLRRTKEY-MLVYGSKDLILTGYIDYDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQS 180
            L+YL  T  + + +     L L  Y D D+  DKD   ST+G +  L    + W S KQ 
Sbjct: 1297 LRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQK 1356

Query: 181  CITDSTMEDEYVAAYEATKEAVWLKKFLTDLEVVPNMHMPITLYCDNSGVVANSREPRSH 240
             +  S+ E EY +    + E  W+   LT+L +   +  P  +YCDN G       P  H
Sbjct: 1357 GVVRSSTEAEYRSVANTSSEMQWICSLLTELGI--RLTRPPVIYCDNVGATYLCANPVFH 1416

Query: 241  KRGKHIERKYHLIREIVHRGDVTVTKVYSEQNMAGPFTKALTVKVF 286
             R KHI   YH IR  V  G + V  V +   +A   TK L+   F
Sbjct: 1417 SRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAF 1451

BLAST of Cmc12g0316851 vs. ExPASy TrEMBL
Match: A0A5A7VMF5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00220 PE=4 SV=1)

HSP 1 Score: 603.6 bits (1555), Expect = 4.5e-169
Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0

Query: 1   MKDLGNAQYVLGIQIVRNCKNKTLAMSQTSYIDKMLSRHKMQNSKKGLLPYRYGIHLSKE 60
           MKDLGNAQYVLGIQIVRNCKNKTLAMSQTSYIDKMLSRHKMQNSKKGLLPYRYGIHLSKE
Sbjct: 368 MKDLGNAQYVLGIQIVRNCKNKTLAMSQTSYIDKMLSRHKMQNSKKGLLPYRYGIHLSKE 427

Query: 61  QCPKTSQDVKDMSNIPYASALGSLMYAMLCTRPEICYSVGIVSRYQSNPGRDHWTAVKNI 120
           QCPKTSQDVKDMSNIPYASALGSLMYAMLCTRPEICYSVGIVSRYQSNPGRDHWTAVKNI
Sbjct: 428 QCPKTSQDVKDMSNIPYASALGSLMYAMLCTRPEICYSVGIVSRYQSNPGRDHWTAVKNI 487

Query: 121 LKYLRRTKEYMLVYGSKDLILTGYIDYDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSC 180
           LKYLRRTKEYMLVYGSKDLILTGYIDYDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSC
Sbjct: 488 LKYLRRTKEYMLVYGSKDLILTGYIDYDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSC 547

Query: 181 ITDSTMEDEYVAAYEATKEAVWLKKFLTDLEVVPNMHMPITLYCDNSGVVANSREPRSHK 240
           ITDSTMEDEYVAAYEATKEAVWLKKFLTDLEVVPNMHMPITLYCDNSGVVANSREPRSHK
Sbjct: 548 ITDSTMEDEYVAAYEATKEAVWLKKFLTDLEVVPNMHMPITLYCDNSGVVANSREPRSHK 607

Query: 241 RGKHIERKYHLIREIVHRGDVTVTKVYSEQNMAGPFTKALTVKVFGSHLPGLALRG 297
           RGKHIERKYHLIREIVHRGDVTVTKVYSEQNMAGPFTKALTVKVFGSHLPGLALRG
Sbjct: 608 RGKHIERKYHLIREIVHRGDVTVTKVYSEQNMAGPFTKALTVKVFGSHLPGLALRG 663

BLAST of Cmc12g0316851 vs. ExPASy TrEMBL
Match: A0A5D3DJL5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00880 PE=4 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 3.0e-141
Identity = 254/297 (85.52%), Postives = 267/297 (89.90%), Query Frame = 0

Query: 1   MKDLGNAQYVLGIQIVRNCKNKTLAMSQTSYIDKMLSRHKMQNSKKGLLPYRYGIHLSKE 60
           MK LGNA YVL IQIVRN KNKTLAMSQTSYIDKMLSR+KMQNSKK LLPYRYGIHLSKE
Sbjct: 287 MKYLGNAPYVLDIQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKCLLPYRYGIHLSKE 346

Query: 61  QCPKTSQDVKDMSNIPYASALGSLMYAMLCTRPEICYSVGIVSRYQSNPGRDHWTAVKNI 120
           QCPKT Q+V+DMSNIPYA A+GSLMYAMLC RP+ICYSV IVS YQSNPGRDHWT VKNI
Sbjct: 347 QCPKTPQEVEDMSNIPYAFAIGSLMYAMLCIRPDICYSVRIVSTYQSNPGRDHWTVVKNI 406

Query: 121 LKYLRRTKEYMLVYGSKDLILTGYIDYDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSC 180
           +KYLRRTK+YM VYGSKDLILT Y D DFQTDKDARKSTSGSVF LNGGAVVWRSIKQSC
Sbjct: 407 IKYLRRTKDYMFVYGSKDLILTRYTDSDFQTDKDARKSTSGSVFILNGGAVVWRSIKQSC 466

Query: 181 ITDSTMEDEYVAAYEATKEAVWLKKFLTDLEVVPNMHMPITLYCDNSGVVANSREPRSHK 240
           I DSTME +YVAA EA KEAVWLKKFLTDLEVVPNM +PITLYCDNSG VANSREPRSHK
Sbjct: 467 IADSTMEVKYVAACEAAKEAVWLKKFLTDLEVVPNMQLPITLYCDNSGAVANSREPRSHK 526

Query: 241 RGKHIERKYHLIREIVHRGDVTVTKVYSEQNMAGPFTKALTVKVFGSHLPGLALRGL 298
            GKHIERKYHLIR+IVHRGDVTVTK+ SE+NMA PF KALT K+F SHL GL LRGL
Sbjct: 527 HGKHIERKYHLIRKIVHRGDVTVTKISSEENMADPFIKALTAKMFESHLHGLGLRGL 583

BLAST of Cmc12g0316851 vs. ExPASy TrEMBL
Match: A0A5A7UUR4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00140 PE=4 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 3.0e-141
Identity = 254/297 (85.52%), Postives = 267/297 (89.90%), Query Frame = 0

Query: 1   MKDLGNAQYVLGIQIVRNCKNKTLAMSQTSYIDKMLSRHKMQNSKKGLLPYRYGIHLSKE 60
           MK LGNA YVL IQIVRN KNKTLAMSQTSYIDKMLSR+KMQNSKK LLPYRYGIHLSKE
Sbjct: 413 MKYLGNAPYVLDIQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKCLLPYRYGIHLSKE 472

Query: 61  QCPKTSQDVKDMSNIPYASALGSLMYAMLCTRPEICYSVGIVSRYQSNPGRDHWTAVKNI 120
           QCPKT Q+V+DMSNIPYA A+GSLMYAMLC RP+ICYSV IVS YQSNPGRDHWT VKNI
Sbjct: 473 QCPKTPQEVEDMSNIPYAFAIGSLMYAMLCIRPDICYSVRIVSTYQSNPGRDHWTVVKNI 532

Query: 121 LKYLRRTKEYMLVYGSKDLILTGYIDYDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSC 180
           +KYLRRTK+YM VYGSKDLILT Y D DFQTDKDARKSTSGSVF LNGGAVVWRSIKQSC
Sbjct: 533 IKYLRRTKDYMFVYGSKDLILTRYTDSDFQTDKDARKSTSGSVFILNGGAVVWRSIKQSC 592

Query: 181 ITDSTMEDEYVAAYEATKEAVWLKKFLTDLEVVPNMHMPITLYCDNSGVVANSREPRSHK 240
           I DSTME +YVAA EA KEAVWLKKFLTDLEVVPNM +PITLYCDNSG VANSREPRSHK
Sbjct: 593 IADSTMEVKYVAACEAAKEAVWLKKFLTDLEVVPNMQLPITLYCDNSGAVANSREPRSHK 652

Query: 241 RGKHIERKYHLIREIVHRGDVTVTKVYSEQNMAGPFTKALTVKVFGSHLPGLALRGL 298
            GKHIERKYHLIR+IVHRGDVTVTK+ SE+NMA PF KALT K+F SHL GL LRGL
Sbjct: 653 HGKHIERKYHLIRKIVHRGDVTVTKISSEENMADPFIKALTAKMFESHLHGLGLRGL 709

BLAST of Cmc12g0316851 vs. ExPASy TrEMBL
Match: A0A5A7U945 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G001000 PE=3 SV=1)

HSP 1 Score: 510.4 bits (1313), Expect = 5.1e-141
Identity = 249/289 (86.16%), Postives = 266/289 (92.04%), Query Frame = 0

Query: 1   MKDLGNAQYVLGIQIVRNCKNKTLAMSQTSYIDKMLSRHKMQNSKKGLLPYRYGIHLSKE 60
           MKDL NAQYVLGI+IVRN KNKTLAMSQTSYIDKMLSR+KMQNSKK LLPYRYGIHLSKE
Sbjct: 331 MKDLENAQYVLGIEIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKSLLPYRYGIHLSKE 390

Query: 61  QCPKTSQDVKDMSNIPYASALGSLMYAMLCTRPEICYSVGIVSRYQSNPGRDHWTAVKNI 120
           QCPKT Q+VKDMSNIPYASA+GSLMYAMLCTRP+ICYSVGIVSRYQSNPG DHWTAVKNI
Sbjct: 391 QCPKTPQEVKDMSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGSDHWTAVKNI 450

Query: 121 LKYLRRTKEYMLVYGSKDLILTGYIDYDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSC 180
           LKYLRRTK+YMLVYGSKDLILT Y D DFQ+DKD RKSTS SVFTLNG AVVW+ IKQSC
Sbjct: 451 LKYLRRTKDYMLVYGSKDLILTRYTDSDFQSDKDVRKSTSESVFTLNGEAVVWKRIKQSC 510

Query: 181 ITDSTMEDEYVAAYEATKEAVWLKKFLTDLEVVPNMHMPITLYCDNSGVVANSREPRSHK 240
           I DSTME EYVA+ EA KEAVWLKKFLTDLE+VPN+H+PITLYCDNSG VANS+EPRSHK
Sbjct: 511 IADSTMEAEYVASCEAAKEAVWLKKFLTDLEIVPNIHLPITLYCDNSGAVANSQEPRSHK 570

Query: 241 RGKHIERKYHLIREIVHRGDVTVTKVYSEQNMAGPFTKALTVKVFGSHL 290
           R KHIERKYHLIREI+HRGDVT+TK+ SEQN+  PFTKALT KVF SHL
Sbjct: 571 RRKHIERKYHLIREIIHRGDVTITKISSEQNITDPFTKALTAKVFESHL 619

BLAST of Cmc12g0316851 vs. ExPASy TrEMBL
Match: A0A5A7SP86 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00440 PE=4 SV=1)

HSP 1 Score: 503.4 bits (1295), Expect = 6.3e-139
Identity = 251/297 (84.51%), Postives = 266/297 (89.56%), Query Frame = 0

Query: 1   MKDLGNAQYVLGIQIVRNCKNKTLAMSQTSYIDKMLSRHKMQNSKKGLLPYRYGIHLSKE 60
           MKDLGNAQYVLG QIVRN KNKTLAMSQTSYIDKMLSR+KMQNSKKGLL YRYGIHLSKE
Sbjct: 67  MKDLGNAQYVLGNQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKGLLLYRYGIHLSKE 126

Query: 61  QCPKTSQDVKDMSNIPYASALGSLMYAMLCTRPEICYSVGIVSRYQSNPGRDHWTAVKNI 120
           QCPKT Q+V+DMSNIPYAS   SLMYAMLCTR +ICYSV IVSRYQSNPGRDHWT VKNI
Sbjct: 127 QCPKTPQEVEDMSNIPYASPAESLMYAMLCTRSDICYSVEIVSRYQSNPGRDHWTVVKNI 186

Query: 121 LKYLRRTKEYMLVYGSKDLILTGYIDYDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSC 180
           LKYLRRTK+YMLVYGS+DLILTGY + DFQTDKDARKSTS SVFTLN GAV WRSIKQSC
Sbjct: 187 LKYLRRTKDYMLVYGSRDLILTGYTNSDFQTDKDARKSTSRSVFTLNEGAVAWRSIKQSC 246

Query: 181 ITDSTMEDEYVAAYEATKEAVWLKKFLTDLEVVPNMHMPITLYCDNSGVVANSREPRSHK 240
           ITDS +E +YV A EA KEAVWLKKFLTDLEVVPNM +PITLYCDNSG VANSREPRSHK
Sbjct: 247 ITDSIVEAKYVVACEAAKEAVWLKKFLTDLEVVPNMDLPITLYCDNSGAVANSREPRSHK 306

Query: 241 RGKHIERKYHLIREIVHRGDVTVTKVYSEQNMAGPFTKALTVKVFGSHLPGLALRGL 298
           +GKHIE+K+HLIREIVHRGDVT+TK+  EQNMA PFTKALT KVF SHL GL L  L
Sbjct: 307 QGKHIEQKHHLIREIVHRGDVTITKISFEQNMADPFTKALTTKVFESHLHGLGLSSL 363

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0067716.19.2e-169100.00gag/pol protein [Cucumis melo var. makuwa][more]
KAA0058854.16.2e-14185.52gag/pol protein [Cucumis melo var. makuwa][more]
TYK23767.16.2e-14185.52gag/pol protein [Cucumis melo var. makuwa][more]
KAA0052272.11.1e-14086.16gag/pol protein [Cucumis melo var. makuwa][more]
KAA0033024.11.3e-13884.51gag/pol protein [Cucumis melo var. makuwa] >TYK03441.1 gag/pol protein [Cucumis ... [more]
Match NameE-valueIdentityDescription
P109782.6e-6545.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041464.9e-4033.67Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P0CV726.0e-3048.12Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P... [more]
Q9ZT947.4e-2830.77Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW23.7e-2731.82Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
A0A5A7VMF54.5e-169100.00Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G0022... [more]
A0A5D3DJL53.0e-14185.52Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G008... [more]
A0A5A7UUR43.0e-14185.52Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00140... [more]
A0A5A7U9455.1e-14186.16Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G0010... [more]
A0A5A7SP866.3e-13984.51Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G0044... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 157..285
NoneNo IPR availablePANTHERPTHR11439:SF343SUBFAMILY NOT NAMEDcoord: 157..285
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 142..281
e-value: 5.65468E-59
score: 183.438

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc12g0316851.1Cmc12g0316851.1mRNA