Cmc12g0316761 (gene) Melon (Charmono) v1.1

Overview
NameCmc12g0316761
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
LocationCMiso1.1chr12: 1802105 .. 1803058 (+)
RNA-Seq ExpressionCmc12g0316761
SyntenyCmc12g0316761
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGGTGATCACTGGATCTACTCCCTCTGTTGTACAGACCGACCTTCGCCAGCCAGATGGATTGAAATGATTTCGGCCATGCAATTAAAGAAGGGTCTCCCTCGAGATGAACCAACGTTTATGACCATCCCACTCAATTTGTCGAAGAACTTAGGGGAGACAGTCCCTAAGGAGATTTTGTGCGCGTTAGAGAAGTATCGTGATGTGATGTCCGACAGTTTGCCCAAGTTTTTGCCACCTCGAAGAATGATTGATCATGAGATCGAGTTAGTACCAGGGGCAAAACCGCCTGCGAAGAACGCTTATTGTATGACGCCTCCAGAGTTAGCTGAACTTCAGAAACAGTTAGATGAGTTATTGAATGTAGGATTCATTAGGCCAGTAAAAGCTCCGTATGGAGCCCCAATTCTTTTCCAGAAGAAGAAGGATGGGAGTTTACGATTGTGTATCGATTATCGTGCCTTGAATAAGCTCACGGTTTGCAACAAGTATCCACTTCCCATAATTACTGACTTGTTTGATCGCTTACATGGGGCGAAGTGTTTTTCGAAGTTGGACTTGCGATCGGGATACTACCAAGTGAGAATTGTAGAGGGAGATGAGTCGAAGACAACCTGTGTCACCCGATATGGTGCGTTTGAGTTCCTCATAAATGCCATTTGTCTTACCAATGCCTCTGCAACCTTTTGTATGTTGATGAACCAGGTCTTCCATGAATATCTCGAAAAATTTGTAGTGGTCTACCTGGATGATATAGTGGTTTATAGTACGACCATGGAGGAACATAGAGAACACCTGCATAAGGTTTTTCAGAAATTGAAGGAGAACCAACTGTATGTCAAAAGAGAAAAATGTTCCTTTGCACAAGAGCGGATAAACTTCTTGGGCCATGTGATAGAGTGTGGTCGAATTGGGATGAAAGAAGGGAAGATTGCTGTAATACGCGACTGA

mRNA sequence

ATGCTTGGTGATCACTGGATCTACTCCCTCTGTTGTACAGACCGACCTTCGCCAGCCAGATGGATTGAAATGATTTCGGCCATGCAATTAAAGAAGGGTCTCCCTCGAGATGAACCAACGTTTATGACCATCCCACTCAATTTGTCGAAGAACTTAGGGGAGACAGTCCCTAAGGAGATTTTGTGCGCGTTAGAGAAGTATCGTGATGTGATGTCCGACAGTTTGCCCAAGTTTTTGCCACCTCGAAGAATGATTGATCATGAGATCGAGTTAGTACCAGGGGCAAAACCGCCTGCGAAGAACGCTTATTGTATGACGCCTCCAGAGTTAGCTGAACTTCAGAAACAGTTAGATGAGTTATTGAATGTAGGATTCATTAGGCCAGTAAAAGCTCCGTATGGAGCCCCAATTCTTTTCCAGAAGAAGAAGGATGGGAGTTTACGATTGTGTATCGATTATCGTGCCTTGAATAAGCTCACGGTTTGCAACAAGTATCCACTTCCCATAATTACTGACTTGTTTGATCGCTTACATGGGGCGAAGTGTTTTTCGAAGTTGGACTTGCGATCGGGATACTACCAAGTGAGAATTGTAGAGGGAGATGAGTCGAAGACAACCTGTGTCACCCGATATGGTGCGTTTGAGTTCCTCATAAATGCCATTTGTCTTACCAATGCCTCTGCAACCTTTTGTATGTTGATGAACCAGGTCTTCCATGAATATCTCGAAAAATTTGTAGTGGTCTACCTGGATGATATAGTGGTTTATAGTACGACCATGGAGGAACATAGAGAACACCTGCATAAGGTTTTTCAGAAATTGAAGGAGAACCAACTGTATGTCAAAAGAGAAAAATGTTCCTTTGCACAAGAGCGGATAAACTTCTTGGGCCATGTGATAGAGTGTGGTCGAATTGGGATGAAAGAAGGGAAGATTGCTGTAATACGCGACTGA

Coding sequence (CDS)

ATGCTTGGTGATCACTGGATCTACTCCCTCTGTTGTACAGACCGACCTTCGCCAGCCAGATGGATTGAAATGATTTCGGCCATGCAATTAAAGAAGGGTCTCCCTCGAGATGAACCAACGTTTATGACCATCCCACTCAATTTGTCGAAGAACTTAGGGGAGACAGTCCCTAAGGAGATTTTGTGCGCGTTAGAGAAGTATCGTGATGTGATGTCCGACAGTTTGCCCAAGTTTTTGCCACCTCGAAGAATGATTGATCATGAGATCGAGTTAGTACCAGGGGCAAAACCGCCTGCGAAGAACGCTTATTGTATGACGCCTCCAGAGTTAGCTGAACTTCAGAAACAGTTAGATGAGTTATTGAATGTAGGATTCATTAGGCCAGTAAAAGCTCCGTATGGAGCCCCAATTCTTTTCCAGAAGAAGAAGGATGGGAGTTTACGATTGTGTATCGATTATCGTGCCTTGAATAAGCTCACGGTTTGCAACAAGTATCCACTTCCCATAATTACTGACTTGTTTGATCGCTTACATGGGGCGAAGTGTTTTTCGAAGTTGGACTTGCGATCGGGATACTACCAAGTGAGAATTGTAGAGGGAGATGAGTCGAAGACAACCTGTGTCACCCGATATGGTGCGTTTGAGTTCCTCATAAATGCCATTTGTCTTACCAATGCCTCTGCAACCTTTTGTATGTTGATGAACCAGGTCTTCCATGAATATCTCGAAAAATTTGTAGTGGTCTACCTGGATGATATAGTGGTTTATAGTACGACCATGGAGGAACATAGAGAACACCTGCATAAGGTTTTTCAGAAATTGAAGGAGAACCAACTGTATGTCAAAAGAGAAAAATGTTCCTTTGCACAAGAGCGGATAAACTTCTTGGGCCATGTGATAGAGTGTGGTCGAATTGGGATGAAAGAAGGGAAGATTGCTGTAATACGCGACTGA

Protein sequence

MLGDHWIYSLCCTDRPSPARWIEMISAMQLKKGLPRDEPTFMTIPLNLSKNLGETVPKEILCALEKYRDVMSDSLPKFLPPRRMIDHEIELVPGAKPPAKNAYCMTPPELAELQKQLDELLNVGFIRPVKAPYGAPILFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKCFSKLDLRSGYYQVRIVEGDESKTTCVTRYGAFEFLINAICLTNASATFCMLMNQVFHEYLEKFVVVYLDDIVVYSTTMEEHREHLHKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMKEGKIAVIRD
Homology
BLAST of Cmc12g0316761 vs. NCBI nr
Match: KAA0067732.1 (uncharacterized protein E6C27_scaffold352G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 649.0 bits (1673), Expect = 2.0e-182
Identity = 312/313 (99.68%), Postives = 313/313 (100.00%), Query Frame = 0

Query: 1   MLGDHWIYSLCCTDRPSPARWIEMISAMQLKKGLPRDEPTFMTIPLNLSKNLGETVPKEI 60
           MLGDHWIYSLCCTDRPSPARWIEMISAMQLKKGLPRDEPTFMTIPLNLSKNLGETVPKEI
Sbjct: 80  MLGDHWIYSLCCTDRPSPARWIEMISAMQLKKGLPRDEPTFMTIPLNLSKNLGETVPKEI 139

Query: 61  LCALEKYRDVMSDSLPKFLPPRRMIDHEIELVPGAKPPAKNAYCMTPPELAELQKQLDEL 120
           LCALEKYRDVMSDSLPKFLPPRRMIDHEIELVPGAKPPAKNAYCMTPPELAELQKQLDEL
Sbjct: 140 LCALEKYRDVMSDSLPKFLPPRRMIDHEIELVPGAKPPAKNAYCMTPPELAELQKQLDEL 199

Query: 121 LNVGFIRPVKAPYGAPILFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGA 180
           LNVGFIRPVKAPYGAPILFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGA
Sbjct: 200 LNVGFIRPVKAPYGAPILFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGA 259

Query: 181 KCFSKLDLRSGYYQVRIVEGDESKTTCVTRYGAFEFLINAICLTNASATFCMLMNQVFHE 240
           KCFSKLDLRSGYYQVRIVEGDESKTTCVTRYGAFEFLINAICLTNASATFCMLMNQVFHE
Sbjct: 260 KCFSKLDLRSGYYQVRIVEGDESKTTCVTRYGAFEFLINAICLTNASATFCMLMNQVFHE 319

Query: 241 YLEKFVVVYLDDIVVYSTTMEEHREHLHKVFQKLKENQLYVKREKCSFAQERINFLGHVI 300
           YLEKFVVVYLDDIVVYSTTMEEHR+HLHKVFQKLKENQLYVKREKCSFAQERINFLGHVI
Sbjct: 320 YLEKFVVVYLDDIVVYSTTMEEHRDHLHKVFQKLKENQLYVKREKCSFAQERINFLGHVI 379

Query: 301 ECGRIGMKEGKIA 314
           ECGRIGMKEGKIA
Sbjct: 380 ECGRIGMKEGKIA 392

BLAST of Cmc12g0316761 vs. NCBI nr
Match: TYK07954.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 531.6 bits (1368), Expect = 4.8e-147
Identity = 262/296 (88.51%), Postives = 272/296 (91.89%), Query Frame = 0

Query: 22  IEMISAMQLKKGLPRDEPTFMTIPLNLSKNLGETVPKEILCALEKYRDVMSDSLPKFLPP 81
           ++MISAMQLKKGL RDEPTFM IPLN S+N GETVPKEI+  LEKYRDVM DSLPK LPP
Sbjct: 561 LKMISAMQLKKGLSRDEPTFMAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPP 620

Query: 82  RRMIDHEIELVPGAKPPAKNAYCMTPPELAELQKQLDELLNVGFIRPVKAPYGAPILFQK 141
           RRMIDHEIELVPGAKPPAKNAY M PPELAEL+KQLDELLN GFIRP KAPYGAP+LFQK
Sbjct: 621 RRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQK 680

Query: 142 KKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKCFSKLDLRSGYYQVRIVEGD 201
           KKDGSLRLCIDYRALNKLTV NKYPLPIITDLFDRLHGAK FSKLDLRSGYYQVRI EGD
Sbjct: 681 KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGD 740

Query: 202 ESKTTCVTRYGAFEFLINAICLTNASATFCMLMNQVFHEYLEKFVVVYLDDIVVYSTTME 261
           E KTTCVTRYGAFEFL+    LTNA ATFC LMNQVFHEYL+KFVVVYLDDIVVYSTTME
Sbjct: 741 EPKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTME 800

Query: 262 EHREHLHKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMKEGKIAVIRD 318
           EHR+HL KVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGM+EGKIA IRD
Sbjct: 801 EHRDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRD 856

BLAST of Cmc12g0316761 vs. NCBI nr
Match: KAA0039608.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 529.3 bits (1362), Expect = 2.4e-146
Identity = 259/296 (87.50%), Postives = 272/296 (91.89%), Query Frame = 0

Query: 22  IEMISAMQLKKGLPRDEPTFMTIPLNLSKNLGETVPKEILCALEKYRDVMSDSLPKFLPP 81
           ++MISAMQLKKGL RDEPTFM IPL  S+N GETVPKEI+  LEKYRDVMSDSLPK LPP
Sbjct: 521 LKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMSDSLPKSLPP 580

Query: 82  RRMIDHEIELVPGAKPPAKNAYCMTPPELAELQKQLDELLNVGFIRPVKAPYGAPILFQK 141
           RRMIDHEIELVPGAKPPAKNAY M PPELAEL+KQLDELLN GFIRP KAPYGAP+LFQ+
Sbjct: 581 RRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR 640

Query: 142 KKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKCFSKLDLRSGYYQVRIVEGD 201
           KKDGSLRLCI+YRALNKLTV NKYPLPIITDLFDRLHGAKCFSKLDLRSGYYQVRI EGD
Sbjct: 641 KKDGSLRLCINYRALNKLTVRNKYPLPIITDLFDRLHGAKCFSKLDLRSGYYQVRIAEGD 700

Query: 202 ESKTTCVTRYGAFEFLINAICLTNASATFCMLMNQVFHEYLEKFVVVYLDDIVVYSTTME 261
           E KTTCVT+YGAFEFL+    LTNA ATFC LMNQVFHEYL+KFVVVYLDDIVVYSTTME
Sbjct: 701 EPKTTCVTQYGAFEFLVMPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTME 760

Query: 262 EHREHLHKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMKEGKIAVIRD 318
           EHR+HL KVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGM+EGKIA I D
Sbjct: 761 EHRDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIHD 816

BLAST of Cmc12g0316761 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 528.5 bits (1360), Expect = 4.0e-146
Identity = 260/296 (87.84%), Postives = 271/296 (91.55%), Query Frame = 0

Query: 22  IEMISAMQLKKGLPRDEPTFMTIPLNLSKNLGETVPKEILCALEKYRDVMSDSLPKFLPP 81
           ++MISAMQLKKGL RDEPTFM IPL  S+N GETVPKEI+  LEKYRDVM DSLPK LPP
Sbjct: 587 LKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPP 646

Query: 82  RRMIDHEIELVPGAKPPAKNAYCMTPPELAELQKQLDELLNVGFIRPVKAPYGAPILFQK 141
           RRMIDHEIELVPGAKPPAKNAY M PPELAEL+KQLDELLN GFIRP KAPYGAP+LFQ+
Sbjct: 647 RRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR 706

Query: 142 KKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKCFSKLDLRSGYYQVRIVEGD 201
           KKDGSLRLCIDYRALNKLTV NKYPLPIITDLFDRLHGAK FSKLDLRSGYYQVRI EGD
Sbjct: 707 KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGD 766

Query: 202 ESKTTCVTRYGAFEFLINAICLTNASATFCMLMNQVFHEYLEKFVVVYLDDIVVYSTTME 261
           E KTTCVTRYGAFEFL+    LTNA ATFC LMNQVFHEYL+KFVVVYLDDIVVYSTTME
Sbjct: 767 EPKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTME 826

Query: 262 EHREHLHKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMKEGKIAVIRD 318
           EHR+HL KVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGM+EGKIA IRD
Sbjct: 827 EHRDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRD 882

BLAST of Cmc12g0316761 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 528.5 bits (1360), Expect = 4.0e-146
Identity = 260/296 (87.84%), Postives = 271/296 (91.55%), Query Frame = 0

Query: 22  IEMISAMQLKKGLPRDEPTFMTIPLNLSKNLGETVPKEILCALEKYRDVMSDSLPKFLPP 81
           ++MISAMQLKKGL RDEPTFM IPL  S+N GETVPKEI+  LEKYRDVM DSLPK LPP
Sbjct: 591 LKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPP 650

Query: 82  RRMIDHEIELVPGAKPPAKNAYCMTPPELAELQKQLDELLNVGFIRPVKAPYGAPILFQK 141
           RRMIDHEIELVPGAKPPAKNAY M PPELAEL+KQLDELLN GFIRP KAPYGAP+LFQ+
Sbjct: 651 RRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR 710

Query: 142 KKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKCFSKLDLRSGYYQVRIVEGD 201
           KKDGSLRLCIDYRALNKLTV NKYPLPIITDLFDRLHGAK FSKLDLRSGYYQVRI EGD
Sbjct: 711 KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGD 770

Query: 202 ESKTTCVTRYGAFEFLINAICLTNASATFCMLMNQVFHEYLEKFVVVYLDDIVVYSTTME 261
           E KTTCVTRYGAFEFL+    LTNA ATFC LMNQVFHEYL+KFVVVYLDDIVVYSTTME
Sbjct: 771 EPKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTME 830

Query: 262 EHREHLHKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMKEGKIAVIRD 318
           EHR+HL KVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGM+EGKIA IRD
Sbjct: 831 EHRDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRD 886

BLAST of Cmc12g0316761 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 196.1 bits (497), Expect = 6.2e-49
Identity = 107/271 (39.48%), Postives = 156/271 (57.56%), Query Frame = 0

Query: 58  KEILCAL-----EKYRDVMSDSLPKFLPPRRM------IDHEIELVPGAKPPAKNAYCMT 117
           K+  C L     +KYR+++ +     LPPR        + H+IE+ PGA+ P    Y +T
Sbjct: 550 KDTFCTLPVWLQQKYREIIRND----LPPRPADINNIPVKHDIEIKPGARLPRLQPYHVT 609

Query: 118 PPELAELQKQLDELLNVGFIRPVKAPYGAPILFQKKKDGSLRLCIDYRALNKLTVCNKYP 177
                E+ K + +LL+  FI P K+P  +P++   KKDG+ RLC+DYR LNK T+ + +P
Sbjct: 610 EKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFP 669

Query: 178 LPIITDLFDRLHGAKCFSKLDLRSGYYQVRIVEGDESKTTCVTRYGAFEFLINAICLTNA 237
           LP I +L  R+  A+ F+ LDL SGY+Q+ +   D  KT  VT  G +E+ +    L NA
Sbjct: 670 LPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNA 729

Query: 238 SATFCMLMNQVFHEYLEKFVVVYLDDIVVYSTTMEEHREHLHKVFQKLKENQLYVKREKC 297
            +TF   M   F +   +FV VYLDDI+++S + EEH +HL  V ++LK   L VK++KC
Sbjct: 730 PSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKC 789

Query: 298 SFAQERINFLGHVIECGRIGMKEGKIAVIRD 318
            FA E   FLG+ I   +I   + K A IRD
Sbjct: 790 KFASEETEFLGYSIGIQKIAPLQHKCAAIRD 814

BLAST of Cmc12g0316761 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 196.1 bits (497), Expect = 6.2e-49
Identity = 107/271 (39.48%), Postives = 156/271 (57.56%), Query Frame = 0

Query: 58  KEILCAL-----EKYRDVMSDSLPKFLPPRRM------IDHEIELVPGAKPPAKNAYCMT 117
           K+  C L     +KYR+++ +     LPPR        + H+IE+ PGA+ P    Y +T
Sbjct: 576 KDTFCTLPVWLQQKYREIIRND----LPPRPADINNIPVKHDIEIKPGARLPRLQPYHVT 635

Query: 118 PPELAELQKQLDELLNVGFIRPVKAPYGAPILFQKKKDGSLRLCIDYRALNKLTVCNKYP 177
                E+ K + +LL+  FI P K+P  +P++   KKDG+ RLC+DYR LNK T+ + +P
Sbjct: 636 EKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFP 695

Query: 178 LPIITDLFDRLHGAKCFSKLDLRSGYYQVRIVEGDESKTTCVTRYGAFEFLINAICLTNA 237
           LP I +L  R+  A+ F+ LDL SGY+Q+ +   D  KT  VT  G +E+ +    L NA
Sbjct: 696 LPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNA 755

Query: 238 SATFCMLMNQVFHEYLEKFVVVYLDDIVVYSTTMEEHREHLHKVFQKLKENQLYVKREKC 297
            +TF   M   F +   +FV VYLDDI+++S + EEH +HL  V ++LK   L VK++KC
Sbjct: 756 PSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKC 815

Query: 298 SFAQERINFLGHVIECGRIGMKEGKIAVIRD 318
            FA E   FLG+ I   +I   + K A IRD
Sbjct: 816 KFASEETEFLGYSIGIQKIAPLQHKCAAIRD 840

BLAST of Cmc12g0316761 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 6.2e-41
Identity = 86/134 (64.18%), Postives = 105/134 (78.36%), Query Frame = 0

Query: 146 SLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKCFSKLDLRSGYYQVRIVEGDESKT 205
           SLR+CIDYRAL K+T+ NKYP+P + DLFDRL  A  F+KLDLRSGY+QVRI +GDE KT
Sbjct: 5   SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64

Query: 206 TCVTRYGAFEFLINAICLTNASATFCMLMNQVFHEYLEKFVVVYLDDIVV---YSTTMEE 265
           TCVTRYG+FEF +    LTNA ATFC LMN V +EYL+ FVVVYLDD+VV   YS ++ E
Sbjct: 65  TCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHE 124

Query: 266 HREHLHKVFQKLKE 277
           H +HL +V ++ KE
Sbjct: 125 HIKHL-RVVRESKE 137

BLAST of Cmc12g0316761 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.9e-38
Identity = 84/242 (34.71%), Postives = 143/242 (59.09%), Query Frame = 0

Query: 65  EKYRDVMSDSLPKFLP-PRRMIDHEIELV-PGAKPPAKNAYCMTPPELAELQKQLDELLN 124
           ++++D+ +++  + LP P + ++ E+EL     + P +N Y + P ++  +  ++++ L 
Sbjct: 379 KEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDEINQGLK 438

Query: 125 VGFIRPVKAPYGAPILFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKC 184
            G IR  KA    P++F  KK+G+LR+ +DY+ LNK    N YPLP+I  L  ++ G+  
Sbjct: 439 SGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTI 498

Query: 185 FSKLDLRSGYYQVRIVEGDESKTTCVTRYGAFEFLINAICLTNASATFCMLMNQVFHEYL 244
           F+KLDL+S Y+ +R+ +GDE K       G FE+L+    ++ A A F   +N +  E  
Sbjct: 499 FTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAK 558

Query: 245 EKFVVVYLDDIVVYSTTMEEHREHLHKVFQKLKENQLYVKREKCSFAQERINFLG-HVIE 304
           E  VV Y+DDI+++S +  EH +H+  V QKLK   L + + KC F Q ++ F+G H+ E
Sbjct: 559 ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISE 618

BLAST of Cmc12g0316761 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.9e-38
Identity = 84/242 (34.71%), Postives = 143/242 (59.09%), Query Frame = 0

Query: 65  EKYRDVMSDSLPKFLP-PRRMIDHEIELV-PGAKPPAKNAYCMTPPELAELQKQLDELLN 124
           ++++D+ +++  + LP P + ++ E+EL     + P +N Y + P ++  +  ++++ L 
Sbjct: 379 KEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDEINQGLK 438

Query: 125 VGFIRPVKAPYGAPILFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKC 184
            G IR  KA    P++F  KK+G+LR+ +DY+ LNK    N YPLP+I  L  ++ G+  
Sbjct: 439 SGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTI 498

Query: 185 FSKLDLRSGYYQVRIVEGDESKTTCVTRYGAFEFLINAICLTNASATFCMLMNQVFHEYL 244
           F+KLDL+S Y+ +R+ +GDE K       G FE+L+    ++ A A F   +N +  E  
Sbjct: 499 FTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAK 558

Query: 245 EKFVVVYLDDIVVYSTTMEEHREHLHKVFQKLKENQLYVKREKCSFAQERINFLG-HVIE 304
           E  VV Y+DDI+++S +  EH +H+  V QKLK   L + + KC F Q ++ F+G H+ E
Sbjct: 559 ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISE 618

BLAST of Cmc12g0316761 vs. ExPASy TrEMBL
Match: A0A5A7VH85 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00510 PE=4 SV=1)

HSP 1 Score: 649.0 bits (1673), Expect = 9.9e-183
Identity = 312/313 (99.68%), Postives = 313/313 (100.00%), Query Frame = 0

Query: 1   MLGDHWIYSLCCTDRPSPARWIEMISAMQLKKGLPRDEPTFMTIPLNLSKNLGETVPKEI 60
           MLGDHWIYSLCCTDRPSPARWIEMISAMQLKKGLPRDEPTFMTIPLNLSKNLGETVPKEI
Sbjct: 80  MLGDHWIYSLCCTDRPSPARWIEMISAMQLKKGLPRDEPTFMTIPLNLSKNLGETVPKEI 139

Query: 61  LCALEKYRDVMSDSLPKFLPPRRMIDHEIELVPGAKPPAKNAYCMTPPELAELQKQLDEL 120
           LCALEKYRDVMSDSLPKFLPPRRMIDHEIELVPGAKPPAKNAYCMTPPELAELQKQLDEL
Sbjct: 140 LCALEKYRDVMSDSLPKFLPPRRMIDHEIELVPGAKPPAKNAYCMTPPELAELQKQLDEL 199

Query: 121 LNVGFIRPVKAPYGAPILFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGA 180
           LNVGFIRPVKAPYGAPILFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGA
Sbjct: 200 LNVGFIRPVKAPYGAPILFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGA 259

Query: 181 KCFSKLDLRSGYYQVRIVEGDESKTTCVTRYGAFEFLINAICLTNASATFCMLMNQVFHE 240
           KCFSKLDLRSGYYQVRIVEGDESKTTCVTRYGAFEFLINAICLTNASATFCMLMNQVFHE
Sbjct: 260 KCFSKLDLRSGYYQVRIVEGDESKTTCVTRYGAFEFLINAICLTNASATFCMLMNQVFHE 319

Query: 241 YLEKFVVVYLDDIVVYSTTMEEHREHLHKVFQKLKENQLYVKREKCSFAQERINFLGHVI 300
           YLEKFVVVYLDDIVVYSTTMEEHR+HLHKVFQKLKENQLYVKREKCSFAQERINFLGHVI
Sbjct: 320 YLEKFVVVYLDDIVVYSTTMEEHRDHLHKVFQKLKENQLYVKREKCSFAQERINFLGHVI 379

Query: 301 ECGRIGMKEGKIA 314
           ECGRIGMKEGKIA
Sbjct: 380 ECGRIGMKEGKIA 392

BLAST of Cmc12g0316761 vs. ExPASy TrEMBL
Match: A0A5D3C9P8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00750 PE=4 SV=1)

HSP 1 Score: 531.6 bits (1368), Expect = 2.3e-147
Identity = 262/296 (88.51%), Postives = 272/296 (91.89%), Query Frame = 0

Query: 22  IEMISAMQLKKGLPRDEPTFMTIPLNLSKNLGETVPKEILCALEKYRDVMSDSLPKFLPP 81
           ++MISAMQLKKGL RDEPTFM IPLN S+N GETVPKEI+  LEKYRDVM DSLPK LPP
Sbjct: 561 LKMISAMQLKKGLSRDEPTFMAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPP 620

Query: 82  RRMIDHEIELVPGAKPPAKNAYCMTPPELAELQKQLDELLNVGFIRPVKAPYGAPILFQK 141
           RRMIDHEIELVPGAKPPAKNAY M PPELAEL+KQLDELLN GFIRP KAPYGAP+LFQK
Sbjct: 621 RRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQK 680

Query: 142 KKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKCFSKLDLRSGYYQVRIVEGD 201
           KKDGSLRLCIDYRALNKLTV NKYPLPIITDLFDRLHGAK FSKLDLRSGYYQVRI EGD
Sbjct: 681 KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGD 740

Query: 202 ESKTTCVTRYGAFEFLINAICLTNASATFCMLMNQVFHEYLEKFVVVYLDDIVVYSTTME 261
           E KTTCVTRYGAFEFL+    LTNA ATFC LMNQVFHEYL+KFVVVYLDDIVVYSTTME
Sbjct: 741 EPKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTME 800

Query: 262 EHREHLHKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMKEGKIAVIRD 318
           EHR+HL KVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGM+EGKIA IRD
Sbjct: 801 EHRDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRD 856

BLAST of Cmc12g0316761 vs. ExPASy TrEMBL
Match: A0A5A7T9P9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00860 PE=4 SV=1)

HSP 1 Score: 529.3 bits (1362), Expect = 1.1e-146
Identity = 259/296 (87.50%), Postives = 272/296 (91.89%), Query Frame = 0

Query: 22  IEMISAMQLKKGLPRDEPTFMTIPLNLSKNLGETVPKEILCALEKYRDVMSDSLPKFLPP 81
           ++MISAMQLKKGL RDEPTFM IPL  S+N GETVPKEI+  LEKYRDVMSDSLPK LPP
Sbjct: 521 LKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMSDSLPKSLPP 580

Query: 82  RRMIDHEIELVPGAKPPAKNAYCMTPPELAELQKQLDELLNVGFIRPVKAPYGAPILFQK 141
           RRMIDHEIELVPGAKPPAKNAY M PPELAEL+KQLDELLN GFIRP KAPYGAP+LFQ+
Sbjct: 581 RRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR 640

Query: 142 KKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKCFSKLDLRSGYYQVRIVEGD 201
           KKDGSLRLCI+YRALNKLTV NKYPLPIITDLFDRLHGAKCFSKLDLRSGYYQVRI EGD
Sbjct: 641 KKDGSLRLCINYRALNKLTVRNKYPLPIITDLFDRLHGAKCFSKLDLRSGYYQVRIAEGD 700

Query: 202 ESKTTCVTRYGAFEFLINAICLTNASATFCMLMNQVFHEYLEKFVVVYLDDIVVYSTTME 261
           E KTTCVT+YGAFEFL+    LTNA ATFC LMNQVFHEYL+KFVVVYLDDIVVYSTTME
Sbjct: 701 EPKTTCVTQYGAFEFLVMPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTME 760

Query: 262 EHREHLHKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMKEGKIAVIRD 318
           EHR+HL KVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGM+EGKIA I D
Sbjct: 761 EHRDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIHD 816

BLAST of Cmc12g0316761 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 1.9e-146
Identity = 260/296 (87.84%), Postives = 271/296 (91.55%), Query Frame = 0

Query: 22  IEMISAMQLKKGLPRDEPTFMTIPLNLSKNLGETVPKEILCALEKYRDVMSDSLPKFLPP 81
           ++MISAMQLKKGL RDEPTFM IPL  S+N GETVPKEI+  LEKYRDVM DSLPK LPP
Sbjct: 591 LKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPP 650

Query: 82  RRMIDHEIELVPGAKPPAKNAYCMTPPELAELQKQLDELLNVGFIRPVKAPYGAPILFQK 141
           RRMIDHEIELVPGAKPPAKNAY M PPELAEL+KQLDELLN GFIRP KAPYGAP+LFQ+
Sbjct: 651 RRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR 710

Query: 142 KKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKCFSKLDLRSGYYQVRIVEGD 201
           KKDGSLRLCIDYRALNKLTV NKYPLPIITDLFDRLHGAK FSKLDLRSGYYQVRI EGD
Sbjct: 711 KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGD 770

Query: 202 ESKTTCVTRYGAFEFLINAICLTNASATFCMLMNQVFHEYLEKFVVVYLDDIVVYSTTME 261
           E KTTCVTRYGAFEFL+    LTNA ATFC LMNQVFHEYL+KFVVVYLDDIVVYSTTME
Sbjct: 771 EPKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTME 830

Query: 262 EHREHLHKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMKEGKIAVIRD 318
           EHR+HL KVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGM+EGKIA IRD
Sbjct: 831 EHRDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRD 886

BLAST of Cmc12g0316761 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 1.9e-146
Identity = 260/296 (87.84%), Postives = 271/296 (91.55%), Query Frame = 0

Query: 22  IEMISAMQLKKGLPRDEPTFMTIPLNLSKNLGETVPKEILCALEKYRDVMSDSLPKFLPP 81
           ++MISAMQLKKGL RDEPTFM IPL  S+N GETVPKEI+  LEKYRDVM DSLPK LPP
Sbjct: 591 LKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPP 650

Query: 82  RRMIDHEIELVPGAKPPAKNAYCMTPPELAELQKQLDELLNVGFIRPVKAPYGAPILFQK 141
           RRMIDHEIELVPGAKPPAKNAY M PPELAEL+KQLDELLN GFIRP KAPYGAP+LFQ+
Sbjct: 651 RRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR 710

Query: 142 KKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDRLHGAKCFSKLDLRSGYYQVRIVEGD 201
           KKDGSLRLCIDYRALNKLTV NKYPLPIITDLFDRLHGAK FSKLDLRSGYYQVRI EGD
Sbjct: 711 KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGD 770

Query: 202 ESKTTCVTRYGAFEFLINAICLTNASATFCMLMNQVFHEYLEKFVVVYLDDIVVYSTTME 261
           E KTTCVTRYGAFEFL+    LTNA ATFC LMNQVFHEYL+KFVVVYLDDIVVYSTTME
Sbjct: 771 EPKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTME 830

Query: 262 EHREHLHKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMKEGKIAVIRD 318
           EHR+HL KVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGM+EGKIA IRD
Sbjct: 831 EHRDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRD 886

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0067732.12.0e-18299.68uncharacterized protein E6C27_scaffold352G00510 [Cucumis melo var. makuwa][more]
TYK07954.14.8e-14788.51reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0039608.12.4e-14687.50reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0067557.14.0e-14687.84reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0037220.14.0e-14687.84reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta... [more]
Match NameE-valueIdentityDescription
Q993156.2e-4939.48Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Q7LHG56.2e-4939.48Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
P318436.2e-4164.18RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1[more]
P0CT414.9e-3834.71Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
P0CT344.9e-3834.71Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
Match NameE-valueIdentityDescription
A0A5A7VH859.9e-18399.68Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35... [more]
A0A5D3C9P82.3e-14788.51Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26... [more]
A0A5A7T9P91.1e-14687.50Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74... [more]
A0A5D3C4R11.9e-14687.84Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
A0A5D3BRZ61.9e-14687.84Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 165..300
e-value: 8.8E-84
score: 282.0
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 85..225
e-value: 8.8E-84
score: 282.0
NoneNo IPR availablePANTHERPTHR15503:SF11RETROTRANSPOSON GAG-LIKE PROTEIN 6coord: 66..282
NoneNo IPR availableCDDcd01647RT_LTRcoord: 124..300
e-value: 1.57062E-83
score: 247.894
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 141..299
e-value: 1.6E-23
score: 83.4
IPR032567LDOC1-relatedPANTHERPTHR15503LDOC1 RELATEDcoord: 66..282
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 64..316

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc12g0316761.1Cmc12g0316761.1mRNA