Cmc11g0313401 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0313401
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	selenoprotein F-like
Location	CMiso1.1chr11: 32722257 .. 32725687 (+)
RNA-Seq Expression	Cmc11g0313401
Synteny	Cmc11g0313401

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATTTCTTCAAATTAGAAGTTAAAAATTCGTCTTTTGTAGAGAGAGTTTTCCAATCGTTCGTAAACTTCGCTTTTTCACCCTCAGTCGCCGGCGACAACAGAGATGCAGCTTCTCCCCGGAGTATGGAATCCCGCTACGGCGGTGACGGTAGCGTTAGCTGCGACGGCGATCATTTTCATCTCGTCAATGCCGTTGGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACCGGCCTTGCTCTCTGTTCCGATTGTCACACTTTAGCTGAATATATCAAAGATCAAGGTGATGCGTTCAATTCAGTGGTGTGTCTTACACTAATTCTTGATTCGGTTTTGAATTTACATCTTTATCACTGTATTTCTTTCGTTCTCGTATATTAGCAGCATCTTGTTGGATTTTGTGCGCTTGTTTTCTTGATTGGACAATTGATTTTTCGTCTTGTGGGTTGTTTTATTTGTGTATCTTGTTTGCTTGATTTGGATTTTGGATTTCTGGGTTACTTGGTTATAGTCTGATGTATAAAGTGTTGGTTTTAATTTGGATATGTTCAATTAATTTCCTAGTATTATGGATAGAGTTTGTTCATATTAGTTCATATTTTGTTCAAAGATACGATAGTGATGAGTTCAGTGATAGAGTTAACTGTTAAGGTCCTACTTCTTTGATTATGTGGGAATTTGTTAGGGAAGATGGTTCCTGAAATTCTGATGTAATAGCTCATCCTTTTTTCAAAAGATTACAAAATAGTTTCTACGGGAAGAAAAAAGTTCTCAACTTTTTGAAGCGATAGACTTATCTTGTTCCTCATGCAATTTGTCGATTATGTTTTTCAGAAAACACGTATCGTGTCTTTCTGATAAGTCGTAATTTGAATGCAATTAGTGATTGTTAGTGCTATTCCTTTTGTCAGCAACTTCTTTTTTTTTTTCGCAATGAACTTTATTCACAAGTGGAAATGGCTTCATGACTTCCCCACACAATTTTGAGAATCAACTGTTTGTATTTTTAAAATAATGTTTTGTGAAAACATCTTCAACTGTTTTTGGAAAGTGGTAAACTTATTTTTTCTAGTTTGTTTTCACATACATCTATTTCTTTTAGTTAAATTGAAGATATTACACACTATCCTCATGCCTAGATTCGTAGTGCAGAATTAGTGGCGGACTGTTTGAAGTGTTGTGCAGAGGATTCTGATGATGCCACGAGTAAGGTACGTCATAAACATGCTGATTTCTTCAAGGGGAATCAATGAAATCTTGTTTCTCCCCCAAAAATTTCATTATCTGACCATTCCATTTTTTATATTAACATATGACACTACTAAACTGAATGCTTGTACGTCCCTTTGGTAGATTTGTGAATGTAAAACACTTTAGTTCAACAGATGTAATTGTCCCGGCTATGCGTCAAAACAAGTTTTGAGTAAACAAGAGAAACTAACTCATCTTTAGAAAAGGATAATTCAAGGAATGTGCAACTCTATCAATGCATATCACAACCCTATTGAAAGTGGGGGGGTTTAGAAATACTTGGCTCATCATTGAGCTCTAGTGTACCCTATTAATTCACCAATTACCTTATTGAGTGTACATACCCATAGTTTCAATATTCTTTTATCAGCGTGTCGAACTTCCGGACAGATTTTTCAAACTTCCACACTCGATAGGAGACAATTACTTATTCTAGTATTTTCCCTCTTCCATTTAGCTCTATACCCCTCCATGGCGTTACAGGGACAAATGCCCTTTATCCTCATGAACACCCCTTTTTGAGATGGAGGGTTGTAGCATGCTTGCTCCTTCGGTATCTCGTGGGAAGTTTATCTCAAGAAGAATAGTGGGATATGTATCTCGAGAAGAATAGTAAGATTGGTAGGGGAGCTGGGAGGTCCGTTACTTGGACTTCTTGTAACTATTAGTTTAGTCTTATTCTTTTTCTTGTTGGTGTCTATTCTGTAAGTTGTTGATGAGTCCTTTTGGGAGCTTGGTTTTTTTTTTTGTATGTCTCGATATGTTCTTTCATTTATCTTCACGAAAGCTTGGTTTCCAAAAATACCATTTAAAGTCCAAGAAACGTTCTTTCAAATTCTACTAGTGAGCTCACACCAAAGATTCCAGAAAAAAGCTTGGTTGATGGCTGGATAAAGTTCTCTTATAACGAAAAGAATGCCCCGCCAATATGTCATAAATATTACCAGGGATAAATGTCCGATATATATCCAGAATTTAGAGCTTCTCCAAGAGATTGAGTTTTCAGTTCCACCCTTATCCAAATTCAGTACTCTTTTTTTTTTATTGTATTTCATAACTAATTTTCTTATTAACGATGAAATCCAATTCACTAAGTTCACTGACTGCAGATAACTTATTCTGGTGCCGTGCTGGAGGTCTGCATGAGGAAGCTAGTCTTCTATCCTGAAATTGTTGGCTTCATCGAAGAGGATAAGGATCAATTCCCTTCAGTTAAGGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAGGGCCAGCATAAAGAAAGCATCAGGTAACTTCTACTTTTCCAATTTACTTAGCTATAACAATCTCTAGAAGAACGTTTAGAGAGTTGAGTTAGTCATAGTACATATAACTAATGTTAGGAGTTGTCTAGAGCCTTGAGTTAAGCTGAGTTGAGTTTTAAAATCTAAAGTTAATATGTCAAAATTGAGTATAAAGTTATAAAATGAAGTTTTTTGATAAATGTGTGAACTTCGATTATGAGTAGTATTTCATGAAGTTGATGGACCAAGCACCCTCATGTAGTAAGATGAATGAAGAACGTGTTTGAAGAGGTTAAGATGCTAAGTATAGCCATAGAGAATTTACTTTAGCTTAATGATAACCTCGATGTAGAAAAATGTTTGATGTTTTATTATTTTTTTAAAATTTTTGCAGGATTGATAATTGGAAACGAGAACATTTTTTGCAGTTCCTGCAAGAGAAGGTTAAGCGATCTTCCGCAATTTAAGGTTCTTTCACCTTTTTTTTTTTAATATAAATTTTAAATTACAACTCTTAATCCAATGTAAAAAACTTCTTAGAATTTGAATGAAACTATTATCGGCCATAAAAAGAAAAAAGAAAGAAAAAAAAATTGAGGTGAGTGAACACTGGATTTTGTGAATTTCAAGGTTAGTAGTGGAAATATAATTGATTTCCTTGTCTAAATCTTTTACTCGATGTTTACTCTCACCGGTGAAACCAATACATTTTAAGCTATTTTGGATGTAATCAATGAGTTTGGAGTATAATGTAATCCTAAATTTTGTTTGTACGGACCATCTCGAAATCAATTTGTAATACCAAACTTCTTCTGTTCATACATTTTTTAATCCATTTTTTTTACTGTTTCAATGCTTCATGATTCCATTT

mRNA sequence

TTATTTCTTCAAATTAGAAGTTAAAAATTCGTCTTTTGTAGAGAGAGTTTTCCAATCGTTCGTAAACTTCGCTTTTTCACCCTCAGTCGCCGGCGACAACAGAGATGCAGCTTCTCCCCGGAGTATGGAATCCCGCTACGGCGGTGACGGTAGCGTTAGCTGCGACGGCGATCATTTTCATCTCGTCAATGCCGTTGGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACCGGCCTTGCTCTCTGTTCCGATTGTCACACTTTAGCTGAATATATCAAAGATCAAGAATTAGTGGCGGACTGTTTGAAGTGTTGTGCAGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCCGTGCTGGAGGTCTGCATGAGGAAGCTAGTCTTCTATCCTGAAATTGTTGGCTTCATCGAAGAGGATAAGGATCAATTCCCTTCAGTTAAGGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAGGGCCAGCATAAAGAAAGCATCAGGATTGATAATTGGAAACGAGAACATTTTTTGCAGTTCCTGCAAGAGAAGGTTAAGCGATCTTCCGCAATTTAAGGTTCTTTCACCTTTTTTTTTTTAATATAAATTTTAAATTACAACTCTTAATCCAATGTAAAAAACTTCTTAGAATTTGAATGAAACTATTATCGGCCATAAAAAGAAAAAAGAAAGAAAAAAAAATTGAGGTGAGTGAACACTGGATTTTGTGAATTTCAAGGTTAGTAGTGGAAATATAATTGATTTCCTTGTCTAAATCTTTTACTCGATGTTTACTCTCACCGGTGAAACCAATACATTTTAAGCTATTTTGGATGTAATCAATGAGTTTGGAGTATAATGTAATCCTAAATTTTGTTTGTACGGACCATCTCGAAATCAATTTGTAATACCAAACTTCTTCTGTTCATACATTTTTTAATCCATTTTTTTTACTGTTTCAATGCTTCATGATTCCATTT

Coding sequence (CDS)

ATGCAGCTTCTCCCCGGAGTATGGAATCCCGCTACGGCGGTGACGGTAGCGTTAGCTGCGACGGCGATCATTTTCATCTCGTCAATGCCGTTGGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACCGGCCTTGCTCTCTGTTCCGATTGTCACACTTTAGCTGAATATATCAAAGATCAAGAATTAGTGGCGGACTGTTTGAAGTGTTGTGCAGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCCGTGCTGGAGGTCTGCATGAGGAAGCTAGTCTTCTATCCTGAAATTGTTGGCTTCATCGAAGAGGATAAGGATCAATTCCCTTCAGTTAAGGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAGGGCCAGCATAAAGAAAGCATCAGGATTGATAATTGGAAACGAGAACATTTTTTGCAGTTCCTGCAAGAGAAGGTTAAGCGATCTTCCGCAATTTAA

Protein sequence

MQLLPGVWNPATAVTVALAATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFPSVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI

Homology

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BLAST of Cmc11g0313401 vs. NCBI nr
Match: XP_008460012.1 (PREDICTED: 15 kDa selenoprotein [Cucumis melo])

HSP 1 Score: 344.7 bits (883), Expect = 4.4e-91
Identity = 169/171 (98.83%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MQLLPGVWNPATAVTVALAATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGVWNPATAVTV LAA AIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVTLAAAAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120
           AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP
Sbjct: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120

Query: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 172
           SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

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BLAST of Cmc11g0313401 vs. NCBI nr
Match: KAA0039920.1 (15 kDa selenoprotein [Cucumis melo var. makuwa] >TYK24580.1 15 kDa selenoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 339.7 bits (870), Expect = 1.4e-89
Identity = 171/182 (93.96%), Postives = 171/182 (93.96%), Query Frame = 0


Query: 1   MQLLPGVWNPATAVTVALAATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGVWNPATAVTVALAATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVALAATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQ-----------ELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIV 120
           AEYIKDQ           ELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIV
Sbjct: 61  AEYIKDQGDAFNSVIRSAELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIV 120

Query: 121 GFIEEDKDQFPSVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSS 172
           GFIEEDKDQFPSVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSS
Sbjct: 121 GFIEEDKDQFPSVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSS 180

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BLAST of Cmc11g0313401 vs. NCBI nr
Match: XP_004140597.1 (selenoprotein F [Cucumis sativus] >KGN46338.1 hypothetical protein Csa_004937 [Cucumis sativus])

HSP 1 Score: 335.9 bits (860), Expect = 2.1e-88
Identity = 164/171 (95.91%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 1   MQLLPGVWNPATAVTVALAATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGVWN A AVTVAL ATAIIFISSMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120
           AEYIKDQELV+DCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIE+DKDQFP
Sbjct: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120

Query: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 172
           SVKVQYTFNSPPKLILLDD+GQHKESIRIDNWKREHFLQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

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BLAST of Cmc11g0313401 vs. NCBI nr
Match: XP_038875398.1 (selenoprotein F [Benincasa hispida])

HSP 1 Score: 328.2 bits (840), Expect = 4.3e-86
Identity = 160/171 (93.57%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 1   MQLLPGVWNPATAVTVALAATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGV NPATAVT+A+AAT +IFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVRNPATAVTMAVAATVVIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120
           AEYIKDQELV DCLKCC EDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEE+KDQFP
Sbjct: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDQFP 120

Query: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 172
           SVKVQY FNSPPKLILLDDEGQHKESIRIDNWKREH LQFLQEKVKRSSAI
Sbjct: 121 SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 171

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BLAST of Cmc11g0313401 vs. NCBI nr
Match: XP_022954272.1 (selenoprotein F-like [Cucurbita moschata] >XP_023549321.1 selenoprotein F-like [Cucurbita pepo subsp. pepo] >KAG7013922.1 Selenoprotein F [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 309.7 bits (792), Expect = 1.6e-80
Identity = 156/172 (90.70%), Postives = 161/172 (93.60%), Query Frame = 0


Query: 1   MQLLPGVWNPATAVTVALAATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLL GV NPAT VT+   ATAIIFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLTGVKNPATMVTM---ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120
           AEYIKDQELV DCLKCC EDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIEE+KDQFP
Sbjct: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFP 120

Query: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVK-RSSAI 172
           SV VQYTFNSPPKLILLDDEGQHKESIRIDNWKREH LQFL+EKVK RSSAI
Sbjct: 121 SVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 169

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BLAST of Cmc11g0313401 vs. ExPASy Swiss-Prot
Match: A1Z623 (Selenoprotein F OS=Sus scrofa OX=9823 GN=SELENOF PE=2 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 2.1e-19
Identity = 60/165 (36.36%), Postives = 89/165 (53.94%), Query Frame = 0


Query: 5   PGVW-NPATAVTVALAATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEY 64
           PG W  PA  + + L ATA+  +S+        + SS  C +LGF+   LC  C  L ++
Sbjct: 5   PGGWLGPALGLRL-LLATALQMVSAF-----GAEFSSESCRELGFSSNLLCGSCDLLGQF 64

Query: 65  IKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQ-FPSV 124
              Q L  DC  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  DK + F  +
Sbjct: 65  DLLQ-LDPDCRGCCQEEAQFETKKL-YAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGL 124

Query: 125 KVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKR 168
           +++Y   S P L LLDD G   E + I  W  +   +FL EK++R
Sbjct: 125 QIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLQR 161

[Close]

BLAST of Cmc11g0313401 vs. ExPASy Swiss-Prot
Match: A8YXY3 (Selenoprotein F OS=Bos taurus OX=9913 GN=SELENOF PE=2 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 6.2e-19
Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 0


Query: 37  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLE 96
           + SS  C +LGF+   LCS C  L ++    +L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 32  EFSSESCRELGFSSNLLCSSCDLLGQF-NLLQLDPDCRGCCQEEAQFETKKL-YAGAILE 91

Query: 97  VCMRKLVFYPEIVGFIEEDKDQ-FPSVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKRE 156
           VC  KL  +P++  F+  DK + F  ++++Y   S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFKGLQIKYVRGSDPVLKLLDDSGNIAEELSILKWNTD 151

Query: 157 HFLQFLQEKVKR 168
              +FL EK++R
Sbjct: 152 SVEEFLSEKLER 161

[Close]

BLAST of Cmc11g0313401 vs. ExPASy Swiss-Prot
Match: O60613 (Selenoprotein F OS=Homo sapiens OX=9606 GN=SELENOF PE=1 SV=4)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-18
Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 0


Query: 37  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLE 96
           + SS  C +LGF+   LCS C  L ++    +L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 35  EFSSEACRELGFSSNLLCSSCDLLGQF-NLLQLDPDCRGCCQEEAQFETKKL-YAGAILE 94

Query: 97  VCMRKLVFYPEIVGFIEEDKDQ-FPSVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKRE 156
           VC  KL  +P++  F+  DK + F  ++++Y   S P L LLDD G   E + I  W  +
Sbjct: 95  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 154

Query: 157 HFLQFLQEKVKR 168
              +FL EK++R
Sbjct: 155 SVEEFLSEKLER 164

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BLAST of Cmc11g0313401 vs. ExPASy Swiss-Prot
Match: Q802F3 (Selenoprotein F OS=Danio rerio OX=7955 GN=selenof PE=2 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 1.8e-18
Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 0


Query: 37  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLE 96
           +LSS  C +LGF+   LCS C  L ++  +Q L   C +CC E++     K+ Y GA+LE
Sbjct: 23  ELSSEACRELGFSSNLLCSSCELLGQFSLNQ-LDLPCRQCCQEEAQLENRKL-YPGAILE 82

Query: 97  VCMRKLVFYPEIVGFIEEDKDQ-FPSVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKRE 156
           VC  KL  +P++  F+  DK + F  ++++Y   S P L LLDD G   E + I  W  +
Sbjct: 83  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 142

Query: 157 HFLQFLQEKVKR 168
              +FL EK++R
Sbjct: 143 SVEEFLSEKLER 152

[Close]

BLAST of Cmc11g0313401 vs. ExPASy Swiss-Prot
Match: Q923V8 (Selenoprotein F OS=Rattus norvegicus OX=10116 GN=Selenof PE=1 SV=3)

HSP 1 Score: 90.1 bits (222), Expect = 2.6e-17
Identity = 58/164 (35.37%), Postives = 87/164 (53.05%), Query Frame = 0


Query: 6   GVW-NPATAVTVALAATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYI 65
           G W  PA  + + L ATA   +S++       + SS  C +LGF+   LCS C  L ++ 
Sbjct: 6   GGWLRPALGLRL-LLATAFQAVSAL-----GAEFSSEACRELGFSSNLLCSSCDLLGQF- 65

Query: 66  KDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQ-FPSVK 125
               L   C  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  DK + F  ++
Sbjct: 66  NLLPLDPVCRGCCQEEAQFETKKL-YAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQ 125

Query: 126 VQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKR 168
           ++Y   S P L LLDD G   E + I  W  +   +FL EK++R
Sbjct: 126 IKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLER 161

[Close]

BLAST of Cmc11g0313401 vs. ExPASy TrEMBL
Match: A0A1S3CC00 (15 kDa selenoprotein OS=Cucumis melo OX=3656 GN=LOC103498956 PE=3 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.2e-91
Identity = 169/171 (98.83%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MQLLPGVWNPATAVTVALAATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGVWNPATAVTV LAA AIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVTLAAAAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120
           AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP
Sbjct: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120

Query: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 172
           SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

[Close]

BLAST of Cmc11g0313401 vs. ExPASy TrEMBL
Match: A0A5A7T9G4 (15 kDa selenoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001250 PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 6.9e-90
Identity = 171/182 (93.96%), Postives = 171/182 (93.96%), Query Frame = 0


Query: 1   MQLLPGVWNPATAVTVALAATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGVWNPATAVTVALAATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVALAATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQ-----------ELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIV 120
           AEYIKDQ           ELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIV
Sbjct: 61  AEYIKDQGDAFNSVIRSAELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIV 120

Query: 121 GFIEEDKDQFPSVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSS 172
           GFIEEDKDQFPSVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSS
Sbjct: 121 GFIEEDKDQFPSVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSS 180

[Close]

BLAST of Cmc11g0313401 vs. ExPASy TrEMBL
Match: A0A0A0KA30 (Sep15_SelM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087180 PE=3 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.0e-88
Identity = 164/171 (95.91%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 1   MQLLPGVWNPATAVTVALAATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGVWN A AVTVAL ATAIIFISSMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120
           AEYIKDQELV+DCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIE+DKDQFP
Sbjct: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120

Query: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 172
           SVKVQYTFNSPPKLILLDD+GQHKESIRIDNWKREHFLQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

[Close]

BLAST of Cmc11g0313401 vs. ExPASy TrEMBL
Match: A0A6J1GQK6 (selenoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111456577 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.7e-81
Identity = 156/172 (90.70%), Postives = 161/172 (93.60%), Query Frame = 0


Query: 1   MQLLPGVWNPATAVTVALAATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLL GV NPAT VT+   ATAIIFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLTGVKNPATMVTM---ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120
           AEYIKDQELV DCLKCC EDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIEE+KDQFP
Sbjct: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFP 120

Query: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVK-RSSAI 172
           SV VQYTFNSPPKLILLDDEGQHKESIRIDNWKREH LQFL+EKVK RSSAI
Sbjct: 121 SVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 169

[Close]

BLAST of Cmc11g0313401 vs. ExPASy TrEMBL
Match: A0A6J1JXH9 (selenoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111488731 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 8.5e-80
Identity = 155/172 (90.12%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 1   MQLLPGVWNPATAVTVALAATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLL GV NPAT VT+   ATAIIFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLTGVKNPATMVTM---ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120
           AEYIKDQELV DCLKCC EDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIEE+K QFP
Sbjct: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKYQFP 120

Query: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVK-RSSAI 172
           SV VQYTFNSPPKLILLDDEGQHKESIRIDNWKREH LQFL+EKVK RSSAI
Sbjct: 121 SVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 169

[Close]

BLAST of Cmc11g0313401 vs. TAIR 10
Match: AT1G05720.1 (selenoprotein family protein )

HSP 1 Score: 247.3 bits (630), Expect = 9.0e-66
Identity = 115/158 (72.78%), Postives = 143/158 (90.51%), Query Frame = 0


Query: 13  AVTVALAATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVAD 72
           A  V L+A  I+ ++S   A  KEQLS++ECEDLGF+GLALCSDCH+L+EY+KDQELV+D
Sbjct: 7   AKMVVLSAMMILILASTISA--KEQLSTKECEDLGFSGLALCSDCHSLSEYVKDQELVSD 66

Query: 73  CLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFPSVKVQYTFNSPP 132
           CLKCCA+DS+D+ SK+TYSGA+LEVCMRKLVFYPEIVGFIEE+K++FPSVKVQY FNSPP
Sbjct: 67  CLKCCADDSEDSMSKVTYSGAILEVCMRKLVFYPEIVGFIEEEKEKFPSVKVQYIFNSPP 126

Query: 133 KLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSA 171
           KLI+LD++G+HKESIRIDNWKREH LQ+++EKVK ++A
Sbjct: 127 KLIMLDEDGEHKESIRIDNWKREHLLQYMREKVKPTAA 162

The following BLAST results are available for this feature:

BLAST of Cmc11g0313401 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460012.1	4.4e-91	98.83	PREDICTED: 15 kDa selenoprotein [Cucumis melo]	[more]
KAA0039920.1	1.4e-89	93.96	15 kDa selenoprotein [Cucumis melo var. makuwa] >TYK24580.1 15 kDa selenoprotein...	[more]
XP_004140597.1	2.1e-88	95.91	selenoprotein F [Cucumis sativus] >KGN46338.1 hypothetical protein Csa_004937 [C...	[more]
XP_038875398.1	4.3e-86	93.57	selenoprotein F [Benincasa hispida]	[more]
XP_022954272.1	1.6e-80	90.70	selenoprotein F-like [Cucurbita moschata] >XP_023549321.1 selenoprotein F-like [...	[more]

BLAST of Cmc11g0313401 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A1Z623	2.1e-19	36.36	Selenoprotein F OS=Sus scrofa OX=9823 GN=SELENOF PE=2 SV=2	[more]
A8YXY3	6.2e-19	37.88	Selenoprotein F OS=Bos taurus OX=9913 GN=SELENOF PE=2 SV=2	[more]
O60613	1.1e-18	37.88	Selenoprotein F OS=Homo sapiens OX=9606 GN=SELENOF PE=1 SV=4	[more]
Q802F3	1.8e-18	37.88	Selenoprotein F OS=Danio rerio OX=7955 GN=selenof PE=2 SV=2	[more]
Q923V8	2.6e-17	35.37	Selenoprotein F OS=Rattus norvegicus OX=10116 GN=Selenof PE=1 SV=3	[more]

BLAST of Cmc11g0313401 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CC00	2.2e-91	98.83	15 kDa selenoprotein OS=Cucumis melo OX=3656 GN=LOC103498956 PE=3 SV=1	[more]
A0A5A7T9G4	6.9e-90	93.96	15 kDa selenoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266...	[more]
A0A0A0KA30	1.0e-88	95.91	Sep15_SelM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087180 ...	[more]
A0A6J1GQK6	7.7e-81	90.70	selenoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111456577 PE=3 SV=1	[more]
A0A6J1JXH9	8.5e-80	90.12	selenoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111488731 PE=3 SV=1	[more]

BLAST of Cmc11g0313401 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05720.1	9.0e-66	72.78	selenoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014912	Selenoprotein F/M domain	PFAM	PF08806	Sep15_SelM	coord: 93..165 e-value: 2.0E-27 score: 95.1
IPR038219	Selenoprotein F/M, thioredoxin-like domain superfamily	GENE3D	3.40.30.50		coord: 92..165 e-value: 4.9E-26 score: 92.8
None	No IPR available	PANTHER	PTHR13077:SF8	BNAANNG25340D PROTEIN	coord: 23..169
IPR039992	Selenoprotein F/M	PANTHER	PTHR13077	SELENOPROTEIN F	coord: 23..169
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 76..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0313401.1	Cmc11g0313401.1	mRNA