Cmc11g0311191 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0311191
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	UvrABC system protein C
Location	CMiso1.1chr11: 31240279 .. 31240938 (+)
RNA-Seq Expression	Cmc11g0311191
Synteny	Cmc11g0311191

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCAACCTCCATCTTTAATGCTCAAAATAATGGAGAGATGAATACAATAGTTAAACCCTCCTTCAACTTAATTTGCACACATCTCTCAAAAATAGTTCTCAAATATAATATATATTCCAATTAAGCAGAGAGAGAGAGAGAGAGAGATGGGAAATTTGGTGGGAAAGAGAAAATTGGTACATCCAATTGAGGGGTATGAAGGATTGAGATCAAGTTCAAGGCCTTTGAGAATCAAAGTAGTGATGACTAGAAAGCAGCTGAAGAAGCTCATGGCTATGGCTGACGATCTCACAATAAATCATGATTTAGGCACCTTGATCTTCCAAGAATGTTGCCAAGGTAAATTGGATACTCGTGTTCTTACTTGTGTTTGAAGGATTTAGGCTTGGAGGAAGATTTGAATTTCTAGCATATCTCTTAGTCTTAGTTGTGGGTATATATGTTTTAATAAGTTGAATGGTTACCGTTATAAGTTATTGTTTTTGTGAAGACTTTAATTATGACTTGTATCAATATGGCTCATGAGCTGAGAGTTAGAGATTATTTAAGATCTTTTTTTTTATACATTCATTATGATTCTTGCTTACCATCGATCCCTTACTTATATTAAAAGAGTATGTTTATTTCACACATTTGTTAAGAAGACATGATCGAATTC

mRNA sequence

GTTTCAACCTCCATCTTTAATGCTCAAAATAATGGAGAGATGAATACAATAGTTAAACCCTCCTTCAACTTAATTTGCACACATCTCTCAAAAATAGTTCTCAAATATAATATATATTCCAATTAAGCAGAGAGAGAGAGAGAGAGAGATGGGAAATTTGGTGGGAAAGAGAAAATTGGTACATCCAATTGAGGGGTATGAAGGATTGAGATCAAGTTCAAGGCCTTTGAGAATCAAAGTAGTGATGACTAGAAAGCAGCTGAAGAAGCTCATGGCTATGGCTGACGATCTCACAATAAATCATGATTTAGGCACCTTGATCTTCCAAGAATGTTGCCAAGGTAAATTGGATACTCGTGTTCTTACTTGTGTTTGAAGGATTTAGGCTTGGAGGAAGATTTGAATTTCTAGCATATCTCTTAGTCTTAGTTGTGGGTATATATGTTTTAATAAGTTGAATGGTTACCGTTATAAGTTATTGTTTTTGTGAAGACTTTAATTATGACTTGTATCAATATGGCTCATGAGCTGAGAGTTAGAGATTATTTAAGATCTTTTTTTTTATACATTCATTATGATTCTTGCTTACCATCGATCCCTTACTTATATTAAAAGAGTATGTTTATTTCACACATTTGTTAAGAAGACATGATCGAATTC

Coding sequence (CDS)

ATGGGAAATTTGGTGGGAAAGAGAAAATTGGTACATCCAATTGAGGGGTATGAAGGATTGAGATCAAGTTCAAGGCCTTTGAGAATCAAAGTAGTGATGACTAGAAAGCAGCTGAAGAAGCTCATGGCTATGGCTGACGATCTCACAATAAATCATGATTTAGGCACCTTGATCTTCCAAGAATGTTGCCAAGGTAAATTGGATACTCGTGTTCTTACTTGTGTTTGA

Protein sequence

MGNLVGKRKLVHPIEGYEGLRSSSRPLRIKVVMTRKQLKKLMAMADDLTINHDLGTLIFQECCQGKLDTRVLTCV

Homology

[Close]

BLAST of Cmc11g0311191 vs. NCBI nr
Match: KAG7013803.1 (hypothetical protein SDJN02_23970, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108.6 bits (270), Expect = 2.4e-20
Identity = 53/75 (70.67%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 1  MGNLVGKRKLVHPIEGYEGLRSSSRPLRIKVVMTRKQLKKLMAMADDLTINHDLGTLIFQ 60
          MGN +GKR+++HPIEG+EGLRS SRPLRIKVVMTR QLK+LMAMA DL++  DL +LI Q
Sbjct: 1  MGNWIGKRRVIHPIEGHEGLRSCSRPLRIKVVMTRNQLKELMAMA-DLSLCDDLASLILQ 60

Query: 61 ECCQGKLDTRVLTCV 76
          ECC+GK D R+LT V
Sbjct: 61 ECCRGKFDARLLTSV 74

[Close]

BLAST of Cmc11g0311191 vs. NCBI nr
Match: KAF3963623.1 (hypothetical protein CMV_012006 [Castanea mollissima])

HSP 1 Score: 68.9 bits (167), Expect = 2.1e-08
Identity = 33/72 (45.83%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 1  MGNLVGKRKLVHPIEGYEGLRSSSRPLRIKVVMTRKQLKKLMAMADDLTINHDLGTLIFQ 60
          MGN  G++K VHP++  +G+R  S  LRI+V M++++LK++M   D    N DLG LI Q
Sbjct: 1  MGNSFGRKKGVHPVDQADGIRVPSSYLRIRVRMSKRELKEMMDQVDLTQGNSDLGGLIMQ 60

Query: 61 ECCQGKLDTRVL 73
          EC +G+L+ R L
Sbjct: 61 ECLEGRLNARAL 72

[Close]

BLAST of Cmc11g0311191 vs. NCBI nr
Match: VVA25556.1 (PREDICTED: POPTR_0014s10080g [Prunus dulcis])

HSP 1 Score: 61.2 bits (147), Expect = 4.3e-06
Identity = 40/82 (48.78%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 1  MGNLVGKRKLVHPIEGYEGLR----SSSRPLRIKVVMTRKQLKKLMAMADDLTI---NHD 60
          MGN VG+ K VHP E     R    SSS  LRIKV MT KQ K+LMA  D   I   N +
Sbjct: 1  MGNWVGRYKGVHPTEDQARHRTSSSSSSNSLRIKVRMTAKQFKELMAEVDATKIPDSNSE 60

Query: 61 LGTLIFQECCQGKLDTRVLTCV 76
          LG LI +EC +G+   RV+  V
Sbjct: 61 LGRLILRECLEGRSCARVVAAV 82

[Close]

BLAST of Cmc11g0311191 vs. NCBI nr
Match: ONI23590.1 (hypothetical protein PRUPE_2G197000 [Prunus persica])

HSP 1 Score: 60.1 bits (144), Expect = 9.6e-06
Identity = 39/79 (49.37%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 1  MGNLVGKRKLVHPIEGYEGLR----SSSRPLRIKVVMTRKQLKKLMAMADDLTI---NHD 60
          MGN VG+ K VHP E     R    SSS  LRIKV MT KQ K+LMA  D   I   N +
Sbjct: 1  MGNWVGRYKGVHPTEDQARHRTSSSSSSNSLRIKVRMTAKQFKELMAEVDATKIPNSNSE 60

Query: 61 LGTLIFQECCQGKLDTRVL 73
          LG LI +EC +G+   RV+
Sbjct: 61 LGRLILRECLEGRSCARVV 79

[Close]

BLAST of Cmc11g0311191 vs. NCBI nr
Match: XP_024197720.1 (uncharacterized protein LOC112200945 [Rosa chinensis])

HSP 1 Score: 60.1 bits (144), Expect = 9.6e-06
Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 1  MGNLVGKRKLVHPIEGYEGLR--SSSRPLRIKVVMTRKQLKKLMAMADDLT---INHDLG 60
          MGN VGK + VHP++  EGL    S+  +RIK+ MT+++LK+LMA  D       + +LG
Sbjct: 1  MGNWVGKERGVHPVDEDEGLHGVGSNSLMRIKLRMTKRELKELMAQVDMTNGGDKSEELG 60

Query: 61 TLIFQECCQGKLDTRVL 73
           LI +EC +G+L  RV+
Sbjct: 61 GLILKECLEGRLCARVV 77

[Close]

BLAST of Cmc11g0311191 vs. ExPASy TrEMBL
Match: A0A7N2MCT3 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-09
Identity = 34/72 (47.22%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 1  MGNLVGKRKLVHPIEGYEGLRSSSRPLRIKVVMTRKQLKKLMAMADDLTINHDLGTLIFQ 60
          MGN  G++K VHP++  +G+R  S  LRI+V M++++LK++MA  D    N DLG LI Q
Sbjct: 1  MGNFFGRKKGVHPVDQADGIRVPSSYLRIRVRMSKRKLKEMMAQVDLTQGNSDLGGLIMQ 60

Query: 61 ECCQGKLDTRVL 73
          EC +G+L+ R L
Sbjct: 61 ECLEGRLNARAL 72

[Close]

BLAST of Cmc11g0311191 vs. ExPASy TrEMBL
Match: A0A5E4FCA7 (PREDICTED: POPTR_0014s10080g OS=Prunus dulcis OX=3755 GN=ALMOND_2B018674 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-06
Identity = 40/82 (48.78%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 1  MGNLVGKRKLVHPIEGYEGLR----SSSRPLRIKVVMTRKQLKKLMAMADDLTI---NHD 60
          MGN VG+ K VHP E     R    SSS  LRIKV MT KQ K+LMA  D   I   N +
Sbjct: 1  MGNWVGRYKGVHPTEDQARHRTSSSSSSNSLRIKVRMTAKQFKELMAEVDATKIPDSNSE 60

Query: 61 LGTLIFQECCQGKLDTRVLTCV 76
          LG LI +EC +G+   RV+  V
Sbjct: 61 LGRLILRECLEGRSCARVVAAV 82

[Close]

BLAST of Cmc11g0311191 vs. ExPASy TrEMBL
Match: M5X891 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G197000 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.6e-06
Identity = 39/79 (49.37%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 1  MGNLVGKRKLVHPIEGYEGLR----SSSRPLRIKVVMTRKQLKKLMAMADDLTI---NHD 60
          MGN VG+ K VHP E     R    SSS  LRIKV MT KQ K+LMA  D   I   N +
Sbjct: 1  MGNWVGRYKGVHPTEDQARHRTSSSSSSNSLRIKVRMTAKQFKELMAEVDATKIPNSNSE 60

Query: 61 LGTLIFQECCQGKLDTRVL 73
          LG LI +EC +G+   RV+
Sbjct: 61 LGRLILRECLEGRSCARVV 79

[Close]

BLAST of Cmc11g0311191 vs. ExPASy TrEMBL
Match: A0A314ZEY0 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_19127 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-05
Identity = 39/84 (46.43%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 1  MGNLVGKRKLVHPIEGYEGLR------SSSRPLRIKVVMTRKQLKKLMAMAD---DLTIN 60
          MGN VG+ K VHP E  + +R      SSS  LRIKV MT K+LK+LMA  D       N
Sbjct: 1  MGNWVGRYKGVHPTED-QAIRHGTSSSSSSNSLRIKVRMTAKKLKELMAEVDVTKSPNSN 60

Query: 61 HDLGTLIFQECCQGKLDTRVLTCV 76
           +LG LI +EC +G+   RV+  V
Sbjct: 61 SELGRLILRECLEGRSRARVVAAV 83

[Close]

BLAST of Cmc11g0311191 vs. ExPASy TrEMBL
Match: B9RNJ7 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1339590 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.1e-05
Identity = 29/72 (40.28%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1  MGNLVGKRKLVHPIEGYEGLRSSSRPLRIKVVMTRKQLKKLMAMADDLTINHDLGTLIFQ 60
          MGN +G++++VHP+E      +S   LRIKV M+ +QLK+ M+  D    + +LG ++ Q
Sbjct: 1  MGNCLGRKQVVHPLEH----STSDYKLRIKVRMSARQLKEFMSRVDLRKGDSELGRVVLQ 60

Query: 61 ECCQGKLDTRVL 73
          EC  G+L  RV+
Sbjct: 61 ECLDGRLTARVV 68

The following BLAST results are available for this feature:

BLAST of Cmc11g0311191 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013803.1	2.4e-20	70.67	hypothetical protein SDJN02_23970, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAF3963623.1	2.1e-08	45.83	hypothetical protein CMV_012006 [Castanea mollissima]	[more]
VVA25556.1	4.3e-06	48.78	PREDICTED: POPTR_0014s10080g [Prunus dulcis]	[more]
ONI23590.1	9.6e-06	49.37	hypothetical protein PRUPE_2G197000 [Prunus persica]	[more]
XP_024197720.1	9.6e-06	44.16	uncharacterized protein LOC112200945 [Rosa chinensis]	[more]

BLAST of Cmc11g0311191 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc11g0311191 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7N2MCT3	1.5e-09	47.22	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A5E4FCA7	2.1e-06	48.78	PREDICTED: POPTR_0014s10080g OS=Prunus dulcis OX=3755 GN=ALMOND_2B018674 PE=4 SV...	[more]
M5X891	4.6e-06	49.37	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G197000 PE=4 SV=1	[more]
A0A314ZEY0	1.4e-05	46.43	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_191...	[more]
B9RNJ7	5.1e-05	40.28	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1339590 PE=4 SV=1	[more]

BLAST of Cmc11g0311191 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0311191.1	Cmc11g0311191.1	mRNA