Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCACCACCATGTTCTTAGTAAGGCTTGAGCAATTTGAACCTCTCATTGATGCAACCTCCCTGTTGGCTCAAGTTGCCAAGGATGCCGACGTGAAATTCACACCATTGATGCTCATGATAATCGTATCGAACCGTTCCCCTCGGTTCGTTGCAACGTTGCAATTGTCGCGACGATTGTTCACCAACTTTTCTGTCGATCATAATAAAAGCTCCAAGGTTTCCCTTCAACCTTTCCATGATGCTATGTTGGATGGTGGAAGTTTTTCTTCAATGACTATCCATCTTTTGGATACAACAAACCAAATGGTTCTTAGATTTGAGACTCCAAGTTAGTATCTATATATATATATATATATATATATAATTAAGCCTTTCTACCCTTTTCATCTCTCTATTTTGATTGTTTTTCTTGGGAACCCATAGCTTAGTCTTTTTCTTGTTTTTGTTTGTGTAACTTTAATTAGGTCATGATGTGCCACCATTGCATCATGAATTGGCATTGTCACCTCCCCAAGCAGAGAATTTAGGGCAAGTTGAATATGGAAACTTTTTCACAGTTACTTCTAGAGAGCTGAGAAGGATCATAAAAGAATTACCTCTCTTCCATCAAGATACTGGTATTTAATTAAATTTCTTATTCTTTACACTCTCCTTTCTTTTCATTTCATAATTATTACTTGAAAGAAAATAGTTTATATATGTTTTTAGCATGTAATTATCTTATCTACTTTGTCACAGTTAGTGTTACTGTAACTGGTTCTCAAGTCAAGTTCTCTATTCAATCTAAGGAGATTATACTTACCAAAGAGGTATTAATATATATATGTGTGTGTGTGTATAATCAAATAAAGTAA
mRNA sequence
GCCACCACCATGTTCTTAGTAAGGCTTGAGCAATTTGAACCTCTCATTGATGCAACCTCCCTGTTGGCTCAAGTTGCCAAGGATGCCGACGTGAAATTCACACCATTGATGCTCATGATAATCGTATCGAACCGTTCCCCTCGGTTCGTTGCAACGTTGCAATTGTCGCGACGATTGTTCACCAACTTTTCTGTCGATCATAATAAAAGCTCCAAGGTTTCCCTTCAACCTTTCCATGATGCTATGTTGGATGGTGGAAGTTTTTCTTCAATGACTATCCATCTTTTGGATACAACAAACCAAATGGTTCTTAGATTTGAGACTCCAAGTCATGATGTGCCACCATTGCATCATGAATTGGCATTGTCACCTCCCCAAGCAGAGAATTTAGGGCAAGTTGAATATGGAAACTTTTTCACAGTTACTTCTAGAGAGCTGAGAAGGATCATAAAAGAATTACCTCTCTTCCATCAAGATACTGTTAGTGTTACTGTAACTGGTTCTCAAGTCAAGTTCTCTATTCAATCTAAGGAGATTATACTTACCAAAGAGGTATTAATATATATATGTGTGTGTGTGTATAATCAAATAAAGTAA
Coding sequence (CDS)
ATGTTCTTAGTAAGGCTTGAGCAATTTGAACCTCTCATTGATGCAACCTCCCTGTTGGCTCAAGTTGCCAAGGATGCCGACGTGAAATTCACACCATTGATGCTCATGATAATCGTATCGAACCGTTCCCCTCGGTTCGTTGCAACGTTGCAATTGTCGCGACGATTGTTCACCAACTTTTCTGTCGATCATAATAAAAGCTCCAAGGTTTCCCTTCAACCTTTCCATGATGCTATGTTGGATGGTGGAAGTTTTTCTTCAATGACTATCCATCTTTTGGATACAACAAACCAAATGGTTCTTAGATTTGAGACTCCAAGTCATGATGTGCCACCATTGCATCATGAATTGGCATTGTCACCTCCCCAAGCAGAGAATTTAGGGCAAGTTGAATATGGAAACTTTTTCACAGTTACTTCTAGAGAGCTGAGAAGGATCATAAAAGAATTACCTCTCTTCCATCAAGATACTGTTAGTGTTACTGTAACTGGTTCTCAAGTCAAGTTCTCTATTCAATCTAAGGAGATTATACTTACCAAAGAGGTATTAATATATATATGTGTGTGTGTGTATAATCAAATAAAGTAA
Protein sequence
MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPRFVATLQLSRRLFTNFSVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELALSPPQAENLGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILTKEVLIYICVCVYNQIK
Homology
BLAST of Cmc11g0309851 vs. NCBI nr
Match:
XP_008458682.1 (PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo])
HSP 1 Score: 349.4 bits (895), Expect = 2.1e-92
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 0
Query: 1 MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPRFVATLQLSRRLFTNF 60
MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSP+FVATLQLSRRLFTNF
Sbjct: 1 MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNF 60
Query: 61 SVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELALS 120
SVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELALS
Sbjct: 61 SVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELALS 120
Query: 121 PPQAENLGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILTK 180
PPQAENLGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILTK
Sbjct: 121 PPQAENLGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILTK 180
Query: 181 E 182
E
Sbjct: 181 E 181
BLAST of Cmc11g0309851 vs. NCBI nr
Match:
TYK02993.1 (uncharacterized protein E5676_scaffold46G00820 [Cucumis melo var. makuwa])
HSP 1 Score: 293.9 bits (751), Expect = 1.0e-75
Identity = 158/183 (86.34%), Postives = 160/183 (87.43%), Query Frame = 0
Query: 1 MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPRFVATLQLSRRLFTNF 60
MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSP+FVATLQLSRRLFTNF
Sbjct: 1 MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNF 60
Query: 61 SVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELALS 120
SVDHNKSSKVSLQPFHDAMLDGG SHDVPPLHHELALS
Sbjct: 61 SVDHNKSSKVSLQPFHDAMLDGG-----------------------SHDVPPLHHELALS 120
Query: 121 PPQAENLGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILTK 180
PPQAENLGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILTK
Sbjct: 121 PPQAENLGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILTK 160
Query: 181 EVL 184
EV+
Sbjct: 181 EVM 160
BLAST of Cmc11g0309851 vs. NCBI nr
Match:
KAG7013723.1 (hypothetical protein SDJN02_23890, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 255.4 bits (651), Expect = 4.0e-64
Identity = 129/181 (71.27%), Postives = 153/181 (84.53%), Query Frame = 0
Query: 1 MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPRFVATLQLSRRLFTNF 60
MFLV+L+QFEPL+DATSLL Q++KDADV+FT ML +I S+ SPRFVATLQ+S RLFTN+
Sbjct: 1 MFLVQLQQFEPLLDATSLLTQISKDADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNY 60
Query: 61 SVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELALS 120
SVDH SSKVSL+ FHDAMLDGGSFSSM+IH+L++ QM+LR+E PS + PPLH EL LS
Sbjct: 61 SVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMILRYENPSSNDPPLHLELPLS 120
Query: 121 PPQAENLGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILTK 180
PPQAE+LGQVEYG FFTV S+ LR+IIKELPLFH D V V T ++VKFSI SKEI +TK
Sbjct: 121 PPQAESLGQVEYGKFFTVNSKVLRKIIKELPLFHDDLVRVAATSTRVKFSIASKEITVTK 180
Query: 181 E 182
E
Sbjct: 181 E 181
BLAST of Cmc11g0309851 vs. NCBI nr
Match:
XP_016903187.1 (PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo])
HSP 1 Score: 232.6 bits (592), Expect = 2.8e-57
Identity = 112/187 (59.89%), Postives = 150/187 (80.21%), Query Frame = 0
Query: 1 MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPRFVATLQLSRRLFTNF 60
MFLVRL+ F+PL DATS LAQ+A++AD+KFTPL II SNRSPRFVA LQ++ F N+
Sbjct: 3 MFLVRLKDFDPLFDATSRLAQIAREADIKFTPLFFSIIASNRSPRFVAYLQMTHHCFINY 62
Query: 61 SVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELALS 120
VD++ +S++SL+ FHDA+LDGG+ SMTIHLL Q++LRFE+ SH P +HHEL+L+
Sbjct: 63 KVDNDHTSRISLESFHDALLDGGASPSMTIHLLANIKQLILRFESSSH-APKVHHELSLT 122
Query: 121 PPQAENLGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILTK 180
P Q E+LG+V+Y FF++ S++LRR+I+ LP+FH D++ VT TGSQVKFSI SKEI+LTK
Sbjct: 123 PSQEEDLGEVDYAKFFSIDSKDLRRVIRNLPIFHGDSICVTATGSQVKFSIASKEIVLTK 182
Query: 181 EVLIYIC 188
E ++IC
Sbjct: 183 EKKLFIC 188
BLAST of Cmc11g0309851 vs. NCBI nr
Match:
XP_031743987.1 (uncharacterized protein LOC116404759 [Cucumis sativus])
HSP 1 Score: 227.6 bits (579), Expect = 9.0e-56
Identity = 122/186 (65.59%), Postives = 151/186 (81.18%), Query Frame = 0
Query: 1 MFLVRLEQFEPLIDATSLLAQVA-KDADVKFTPLMLMIIVSNRSPRFVATLQLSRRLFTN 60
MFLV+L F+PL+DATS AQ++ DADVKFTP II S+RSPRF+ATLQLS + FT+
Sbjct: 1 MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60
Query: 61 FSVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELAL 120
FSVDH+ SSKVSL+ FHDA+LDGGSF+SMTIHLLD TNQ++LRF+TPS ++ PLHHELAL
Sbjct: 61 FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120
Query: 121 SPPQAEN--LGQ--VEYGNFFTVTSRELRRIIKELPLFHQDT-VSVTVTGSQVKFSIQSK 180
SPPQAE+ +GQ ++ G +F V S+ LRRIIKELP+F D+ V V VT S+VKFSI SK
Sbjct: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDSIVCVDVTNSRVKFSIASK 180
BLAST of Cmc11g0309851 vs. ExPASy TrEMBL
Match:
A0A1S3C8J1 (uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=4 SV=1)
HSP 1 Score: 349.4 bits (895), Expect = 1.0e-92
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 0
Query: 1 MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPRFVATLQLSRRLFTNF 60
MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSP+FVATLQLSRRLFTNF
Sbjct: 1 MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNF 60
Query: 61 SVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELALS 120
SVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELALS
Sbjct: 61 SVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELALS 120
Query: 121 PPQAENLGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILTK 180
PPQAENLGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILTK
Sbjct: 121 PPQAENLGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILTK 180
Query: 181 E 182
E
Sbjct: 181 E 181
BLAST of Cmc11g0309851 vs. ExPASy TrEMBL
Match:
A0A5D3BTK3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00820 PE=4 SV=1)
HSP 1 Score: 293.9 bits (751), Expect = 5.0e-76
Identity = 158/183 (86.34%), Postives = 160/183 (87.43%), Query Frame = 0
Query: 1 MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPRFVATLQLSRRLFTNF 60
MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSP+FVATLQLSRRLFTNF
Sbjct: 1 MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNF 60
Query: 61 SVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELALS 120
SVDHNKSSKVSLQPFHDAMLDGG SHDVPPLHHELALS
Sbjct: 61 SVDHNKSSKVSLQPFHDAMLDGG-----------------------SHDVPPLHHELALS 120
Query: 121 PPQAENLGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILTK 180
PPQAENLGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILTK
Sbjct: 121 PPQAENLGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILTK 160
Query: 181 EVL 184
EV+
Sbjct: 181 EVM 160
BLAST of Cmc11g0309851 vs. ExPASy TrEMBL
Match:
A0A1S4E4N8 (uncharacterized protein LOC103502263 OS=Cucumis melo OX=3656 GN=LOC103502263 PE=4 SV=1)
HSP 1 Score: 232.6 bits (592), Expect = 1.4e-57
Identity = 112/187 (59.89%), Postives = 150/187 (80.21%), Query Frame = 0
Query: 1 MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPRFVATLQLSRRLFTNF 60
MFLVRL+ F+PL DATS LAQ+A++AD+KFTPL II SNRSPRFVA LQ++ F N+
Sbjct: 3 MFLVRLKDFDPLFDATSRLAQIAREADIKFTPLFFSIIASNRSPRFVAYLQMTHHCFINY 62
Query: 61 SVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELALS 120
VD++ +S++SL+ FHDA+LDGG+ SMTIHLL Q++LRFE+ SH P +HHEL+L+
Sbjct: 63 KVDNDHTSRISLESFHDALLDGGASPSMTIHLLANIKQLILRFESSSH-APKVHHELSLT 122
Query: 121 PPQAENLGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILTK 180
P Q E+LG+V+Y FF++ S++LRR+I+ LP+FH D++ VT TGSQVKFSI SKEI+LTK
Sbjct: 123 PSQEEDLGEVDYAKFFSIDSKDLRRVIRNLPIFHGDSICVTATGSQVKFSIASKEIVLTK 182
Query: 181 EVLIYIC 188
E ++IC
Sbjct: 183 EKKLFIC 188
BLAST of Cmc11g0309851 vs. ExPASy TrEMBL
Match:
A0A5D3DZ07 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1810G00070 PE=4 SV=1)
HSP 1 Score: 225.7 bits (574), Expect = 1.7e-55
Identity = 122/186 (65.59%), Postives = 151/186 (81.18%), Query Frame = 0
Query: 1 MFLVRLEQFEPLIDATSLLAQVAKD-ADVKFTPLMLMIIVSNRSPRFVATLQLSRRLFTN 60
MFLV+L+ F+PL+DATS LAQ++ D AD+KFTP II S+RSPRF+ATLQLS + FT
Sbjct: 1 MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60
Query: 61 FSVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELAL 120
FSVD++ SSKVSL+ FHDA+LDGGSF+SMTIHLLD TNQM+LRF+TPS ++ PLHHEL L
Sbjct: 61 FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120
Query: 121 SPPQAEN--LGQVEYG--NFFTVTSRELRRIIKELPLFHQDT-VSVTVTGSQVKFSIQSK 180
SPPQAE+ +GQ E +F V S+ LRRIIK+LP+F D+ +SV VT S+VKFSI SK
Sbjct: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDSIISVDVTNSRVKFSIASK 180
BLAST of Cmc11g0309851 vs. ExPASy TrEMBL
Match:
A0A1S3CL88 (uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=4 SV=1)
HSP 1 Score: 225.7 bits (574), Expect = 1.7e-55
Identity = 122/186 (65.59%), Postives = 151/186 (81.18%), Query Frame = 0
Query: 1 MFLVRLEQFEPLIDATSLLAQVAKD-ADVKFTPLMLMIIVSNRSPRFVATLQLSRRLFTN 60
MFLV+L+ F+PL+DATS LAQ++ D AD+KFTP II S+RSPRF+ATLQLS + FT
Sbjct: 1 MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60
Query: 61 FSVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELAL 120
FSVD++ SSKVSL+ FHDA+LDGGSF+SMTIHLLD TNQM+LRF+TPS ++ PLHHEL L
Sbjct: 61 FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120
Query: 121 SPPQAEN--LGQVEYG--NFFTVTSRELRRIIKELPLFHQDT-VSVTVTGSQVKFSIQSK 180
SPPQAE+ +GQ E +F V S+ LRRIIK+LP+F D+ +SV VT S+VKFSI SK
Sbjct: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDSIISVDVTNSRVKFSIASK 180
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_008458682.1 | 2.1e-92 | 99.45 | PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo] | [more] |
TYK02993.1 | 1.0e-75 | 86.34 | uncharacterized protein E5676_scaffold46G00820 [Cucumis melo var. makuwa] | [more] |
KAG7013723.1 | 4.0e-64 | 71.27 | hypothetical protein SDJN02_23890, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_016903187.1 | 2.8e-57 | 59.89 | PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo] | [more] |
XP_031743987.1 | 9.0e-56 | 65.59 | uncharacterized protein LOC116404759 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S3C8J1 | 1.0e-92 | 99.45 | uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=... | [more] |
A0A5D3BTK3 | 5.0e-76 | 86.34 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S4E4N8 | 1.4e-57 | 59.89 | uncharacterized protein LOC103502263 OS=Cucumis melo OX=3656 GN=LOC103502263 PE=... | [more] |
A0A5D3DZ07 | 1.7e-55 | 65.59 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A1S3CL88 | 1.7e-55 | 65.59 | uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=... | [more] |
Match Name | E-value | Identity | Description | |