Cmc11g0308791 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0308791
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr11: 29691690 .. 29692459 (+)
RNA-Seq Expression	Cmc11g0308791
Synteny	Cmc11g0308791

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATAATATTATTGTTCCATCTGCGGGGCCCTCGCAAGTTAACCCAAAATTTCAAGCTTCCTTCACTTCACTTCCCTTCCCTTCTCTTCCCTTCCCTTCCCTTCCCCAGAGCTCTATATAACAAAGCAAACAAAAAATCAAAGCTTCACAAACCAACCAAGCAATTAAGAAAAAATATATATCTCTCTCTCTTTTTTTCCTTCCATAATCATGGCCGGATTTCTTAAAGAAAGAGAAATTAGGGGTTCTCCCGGTGACCTGGCGAAAATTGGGAGAGAGGGGTTCGAATTAATTGATGAATACTTTCGTCGAGCATCGACGAGGGGGAGACGGGTGGCGGCAACGGCAAGGCCAGCTTTGCCACAACCACCACGTATGGTGGAGCAACCTCCAAGGATAAGGAAGGAAAAACCGGCGGCCGCCATGACCTCCGATGAAGTGGCTAAACACGGCGGCGGAATCGTGATAACAACTTGGCGTGCGTATGCAAAATGAATATATTTAGCTTTGTTCTACCTCTAAAACTAGAACTAGTTGGTGGTTATAATATATACATATGGGTACTTAATTAACTGCTATATATATATATATATATATATGTATGTATGTATGTATGTTAGTACAGCTCTAGTTTGTTTTCTTGCTTTGGTATGTCGTATATCAATATGTTAATTAAGAAATATATTTGATCTACTACTTATGAAATCTCTAGCTGTATATATCTTCTCTTCCTCTACAAAGAAAGAAATCAATTAGACAAATAGTTTTGT

mRNA sequence

TTATAATATTATTGTTCCATCTGCGGGGCCCTCGCAAGTTAACCCAAAATTTCAAGCTTCCTTCACTTCACTTCCCTTCCCTTCTCTTCCCTTCCCTTCCCTTCCCCAGAGCTCTATATAACAAAGCAAACAAAAAATCAAAGCTTCACAAACCAACCAAGCAATTAAGAAAAAATATATATCTCTCTCTCTTTTTTTCCTTCCATAATCATGGCCGGATTTCTTAAAGAAAGAGAAATTAGGGGTTCTCCCGGTGACCTGGCGAAAATTGGGAGAGAGGGGTTCGAATTAATTGATGAATACTTTCGTCGAGCATCGACGAGGGGGAGACGGGTGGCGGCAACGGCAAGGCCAGCTTTGCCACAACCACCACGTATGGTGGAGCAACCTCCAAGGATAAGGAAGGAAAAACCGGCGGCCGCCATGACCTCCGATGAAGTGGCTAAACACGGCGGCGGAATCGTGATAACAACTTGGCGTGCGTATGCAAAATGAATATATTTAGCTTTGTTCTACCTCTAAAACTAGAACTAGTTGGTGGTTATAATATATACATATGGGTACTTAATTAACTGCTATATATATATATATATATATATGTATGTATGTATGTATGTTAGTACAGCTCTAGTTTGTTTTCTTGCTTTGGTATGTCGTATATCAATATGTTAATTAAGAAATATATTTGATCTACTACTTATGAAATCTCTAGCTGTATATATCTTCTCTTCCTCTACAAAGAAAGAAATCAATTAGACAAATAGTTTTGT

Coding sequence (CDS)

ATGGCCGGATTTCTTAAAGAAAGAGAAATTAGGGGTTCTCCCGGTGACCTGGCGAAAATTGGGAGAGAGGGGTTCGAATTAATTGATGAATACTTTCGTCGAGCATCGACGAGGGGGAGACGGGTGGCGGCAACGGCAAGGCCAGCTTTGCCACAACCACCACGTATGGTGGAGCAACCTCCAAGGATAAGGAAGGAAAAACCGGCGGCCGCCATGACCTCCGATGAAGTGGCTAAACACGGCGGCGGAATCGTGATAACAACTTGGCGTGCGTATGCAAAATGA

Protein sequence

MAGFLKEREIRGSPGDLAKIGREGFELIDEYFRRASTRGRRVAATARPALPQPPRMVEQPPRIRKEKPAAAMTSDEVAKHGGGIVITTWRAYAK

Homology

[Close]

BLAST of Cmc11g0308791 vs. NCBI nr
Match: KGN47422.1 (hypothetical protein Csa_021740 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 4.0e-33
Identity = 78/94 (82.98%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 3  GFLKEREIRGSPGDLAKIGREGFELIDEYFRRASTRG-RRVAA-TARPALPQPPRMVEQP 62
          GFL+EREIRGS GDLAKIGREGF++IDEYF RAS+ G RRVAA TARPALPQPPR  EQP
Sbjct: 2  GFLREREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQP 61

Query: 63 PRIRKEKPAAAMTSDEVAKHGGGIVITTWRAYAK 95
          PRIRKEKP AA+TSD+VAKHGGG VITTWR YAK
Sbjct: 62 PRIRKEKPVAAVTSDQVAKHGGGTVITTWRPYAK 95

[Close]

BLAST of Cmc11g0308791 vs. NCBI nr
Match: KGN47421.1 (hypothetical protein Csa_021737 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-16
Identity = 58/93 (62.37%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 6  KEREIRGSPGDLAKIGREGFELIDEYFRRASTRGRR--VAAT-ARPALPQPPRMV-EQPP 65
          +EREI  +  +LA+IG EGF+LID++F RAST G R  VAAT  RPA  QPPR V EQPP
Sbjct: 4  REREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQPP 63

Query: 66 RIRKEKPAAAMTSDEVAKHGGGIVITTWRAYAK 95
             KEK  A +TSD +AK  GGIVITTWR+YAK
Sbjct: 64 SKTKEKQGAVVTSDHLAKTRGGIVITTWRSYAK 96

[Close]

BLAST of Cmc11g0308791 vs. NCBI nr
Match: KAG6575081.1 (hypothetical protein SDJN03_25720, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.7 bits (234), Expect = 4.4e-16
Identity = 51/78 (65.38%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 15 GDLAKIGREGFELIDEYFRRA-STRGRRVAATARPALPQPPRMVEQPPRIRKEKPAAAMT 74
          GDLAKIGREGF+LIDEYF RA +TR     A ARPALPQ P   EQPPR ++EK   A+ 
Sbjct: 5  GDLAKIGREGFDLIDEYFGRAPATRRAAAVAAARPALPQAPCKAEQPPRKKREKMPVAVN 64

Query: 75 SDEVAKHGGGIVITTWRA 92
           ++VAK  GGIVITTWRA
Sbjct: 65 CNQVAKARGGIVITTWRA 82

[Close]

BLAST of Cmc11g0308791 vs. NCBI nr
Match: KAG6575082.1 (hypothetical protein SDJN03_25721, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.0 bits (206), Expect = 7.8e-13
Identity = 46/76 (60.53%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 16 DLAKIGREGFELIDEYFRRASTRGRRVAATARPALPQPPRMVEQPPRIRKEKPAAAMTSD 75
          DLAKIGREGFELIDEYF R     R   A ARPALPQ P   EQPPR  +EK    +  +
Sbjct: 6  DLAKIGREGFELIDEYFGRVPATRR--PAVARPALPQAPCKAEQPPRKMREKLPVPVNCN 65

Query: 76 EVAKHGGGIVITTWRA 92
          +VA+  GG+VITTWRA
Sbjct: 66 QVARARGGVVITTWRA 79

[Close]

BLAST of Cmc11g0308791 vs. NCBI nr
Match: XP_023548315.1 (multiple organellar RNA editing factor 3, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.1 bits (157), Expect = 3.7e-07
Identity = 36/53 (67.92%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 16 DLAKIGREGFELIDEYFRRA-STRGRRVAATARPALPQPPRMVEQPPRIRKEK 68
          DLAKIGREGFELIDEYF R  +TR    AA  RPALPQ P   EQPPR  +EK
Sbjct: 6  DLAKIGREGFELIDEYFGRVPATRRAAAAAAGRPALPQAPCKAEQPPRKMREK 58

[Close]

BLAST of Cmc11g0308791 vs. ExPASy TrEMBL
Match: A0A0A0KG95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318690 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.9e-33
Identity = 78/94 (82.98%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 3  GFLKEREIRGSPGDLAKIGREGFELIDEYFRRASTRG-RRVAA-TARPALPQPPRMVEQP 62
          GFL+EREIRGS GDLAKIGREGF++IDEYF RAS+ G RRVAA TARPALPQPPR  EQP
Sbjct: 2  GFLREREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQP 61

Query: 63 PRIRKEKPAAAMTSDEVAKHGGGIVITTWRAYAK 95
          PRIRKEKP AA+TSD+VAKHGGG VITTWR YAK
Sbjct: 62 PRIRKEKPVAAVTSDQVAKHGGGTVITTWRPYAK 95

[Close]

BLAST of Cmc11g0308791 vs. ExPASy TrEMBL
Match: A0A0A0KI19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318680 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.6e-17
Identity = 58/93 (62.37%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 6  KEREIRGSPGDLAKIGREGFELIDEYFRRASTRGRR--VAAT-ARPALPQPPRMV-EQPP 65
          +EREI  +  +LA+IG EGF+LID++F RAST G R  VAAT  RPA  QPPR V EQPP
Sbjct: 4  REREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQPP 63

Query: 66 RIRKEKPAAAMTSDEVAKHGGGIVITTWRAYAK 95
             KEK  A +TSD +AK  GGIVITTWR+YAK
Sbjct: 64 SKTKEKQGAVVTSDHLAKTRGGIVITTWRSYAK 96

The following BLAST results are available for this feature:

BLAST of Cmc11g0308791 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47422.1	4.0e-33	82.98	hypothetical protein Csa_021740 [Cucumis sativus]	[more]
KGN47421.1	1.2e-16	62.37	hypothetical protein Csa_021737 [Cucumis sativus]	[more]
KAG6575081.1	4.4e-16	65.38	hypothetical protein SDJN03_25720, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6575082.1	7.8e-13	60.53	hypothetical protein SDJN03_25721, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023548315.1	3.7e-07	67.92	multiple organellar RNA editing factor 3, mitochondrial [Cucurbita pepo subsp. p...	[more]

BLAST of Cmc11g0308791 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc11g0308791 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG95	1.9e-33	82.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318690 PE=4 SV=1	[more]
A0A0A0KI19	5.6e-17	62.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318680 PE=4 SV=1	[more]

BLAST of Cmc11g0308791 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0308791.1	Cmc11g0308791.1	mRNA