Cmc11g0308291 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0308291
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Signal anchor, putative
Location	CMiso1.1chr11: 29365385 .. 29365636 (-)
RNA-Seq Expression	Cmc11g0308291
Synteny	Cmc11g0308291

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATTTCATCGAGCCTCTCTTCGAGACAGTGTCCAGATTGTTACGCCTTTCGTACGGGTTGGAACTTACTCGACAAGGAATTTTGCTACCTTAAGACTGTTATAGTTACGACCGTCGTTCACCAGGGATTCGGTCGCCGGCTCCCATGTCATCAGGTCACCAACTTCCTTGACCTTCCGGCACTAGGTAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGATCTGTGTTTTGGTAAATAG

mRNA sequence

ATGTCTATTTCATCGAGCCTCTCTTCGAGACAGTGTCCAGATTGTTACGCCTTTCGTACGGGTTGGAACTTACTCGACAAGGAATTTTGCTACCTTAAGACTGTTATAGTTACGACCGTCGTTCACCAGGGATTCGGTCGCCGGCTCCCATGTCATCAGGTCACCAACTTCCTTGACCTTCCGGCACTAGGTAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGATCTGTGTTTTGGTAAATAG

Coding sequence (CDS)

ATGTCTATTTCATCGAGCCTCTCTTCGAGACAGTGTCCAGATTGTTACGCCTTTCGTACGGGTTGGAACTTACTCGACAAGGAATTTTGCTACCTTAAGACTGTTATAGTTACGACCGTCGTTCACCAGGGATTCGGTCGCCGGCTCCCATGTCATCAGGTCACCAACTTCCTTGACCTTCCGGCACTAGGTAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGATCTGTGTTTTGGTAAATAG

Protein sequence

MSISSSLSSRQCPDCYAFRTGWNLLDKEFCYLKTVIVTTVVHQGFGRRLPCHQVTNFLDLPALGRRQPPYMVLRLCGDLCFGK

Homology

[Close]

BLAST of Cmc11g0308291 vs. NCBI nr
Match: KAG4151867.1 (hypothetical protein ERO13_D04G096660v2, partial [Gossypium hirsutum])

HSP 1 Score: 154.1 bits (388), Expect = 5.4e-34
Identity = 72/81 (88.89%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1  MSISSSLSSRQCPDCYAFRTGWNLLDKEFCYLKTVIVTTVVHQGFGRRLPCHQVTNFLDL 60
          MSIS SLS RQCPD YAFRTGWNL DKEF YL+TVIVTT VHQ FGRRLPCHQVTNFLDL
Sbjct: 1  MSISPSLSPRQCPDHYAFRTGWNLPDKEFRYLRTVIVTTTVHQVFGRRLPCHQVTNFLDL 60

Query: 61 PALGRRQPPYMVLRLCGDLCF 82
          PALGRRQPP MVLRLCGDLCF
Sbjct: 61 PALGRRQPPNMVLRLCGDLCF 81

[Close]

BLAST of Cmc11g0308291 vs. NCBI nr
Match: TYH29308.1 (hypothetical protein ES288_A01G001200v1 [Gossypium darwinii])

HSP 1 Score: 153.7 bits (387), Expect = 7.1e-34
Identity = 71/81 (87.65%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1  MSISSSLSSRQCPDCYAFRTGWNLLDKEFCYLKTVIVTTVVHQGFGRRLPCHQVTNFLDL 60
          MSIS SLS RQCPD YAFR G NL DKEFCYL+TVIVT  VH GFGRRLPCHQVTNFLDL
Sbjct: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFCYLRTVIVTAAVHWGFGRRLPCHQVTNFLDL 60

Query: 61 PALGRRQPPYMVLRLCGDLCF 82
          PALGRRQPPYMVLRLCGDLCF
Sbjct: 61 PALGRRQPPYMVLRLCGDLCF 81

[Close]

BLAST of Cmc11g0308291 vs. NCBI nr
Match: KAG4109276.1 (hypothetical protein ERO13_1Z056500v2 [Gossypium hirsutum])

HSP 1 Score: 152.1 bits (383), Expect = 2.1e-33
Identity = 71/81 (87.65%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1  MSISSSLSSRQCPDCYAFRTGWNLLDKEFCYLKTVIVTTVVHQGFGRRLPCHQVTNFLDL 60
          MSIS SLS RQCPD YAFRTG NL DKEF YL+TVIVT  VH+GFGRRLPCHQVTNFLDL
Sbjct: 1  MSISPSLSPRQCPDRYAFRTGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL 60

Query: 61 PALGRRQPPYMVLRLCGDLCF 82
          PALGRRQPPYMVLRLCGDLCF
Sbjct: 61 PALGRRQPPYMVLRLCGDLCF 81

[Close]

BLAST of Cmc11g0308291 vs. NCBI nr
Match: KAG2642311.1 (hypothetical protein PVAP13_2KG284596 [Panicum virgatum])

HSP 1 Score: 150.6 bits (379), Expect = 6.0e-33
Identity = 68/81 (83.95%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1  MSISSSLSSRQCPDCYAFRTGWNLLDKEFCYLKTVIVTTVVHQGFGRRLPCHQVTNFLDL 60
          MSISSSLS RQCPD YAFR G NL DKEF YLKT+IVT+ +H+GFGRRLPCHQ TNFLDL
Sbjct: 1  MSISSSLSPRQCPDHYAFRVGQNLPDKEFRYLKTIIVTSAIHRGFGRRLPCHQFTNFLDL 60

Query: 61 PALGRRQPPYMVLRLCGDLCF 82
          PALGRRQPPYMVLRLCGD+CF
Sbjct: 61 PALGRRQPPYMVLRLCGDMCF 81

[Close]

BLAST of Cmc11g0308291 vs. NCBI nr
Match: TYI40543.1 (hypothetical protein ES332_A02G170300v1 [Gossypium tomentosum])

HSP 1 Score: 150.6 bits (379), Expect = 6.0e-33
Identity = 70/81 (86.42%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1  MSISSSLSSRQCPDCYAFRTGWNLLDKEFCYLKTVIVTTVVHQGFGRRLPCHQVTNFLDL 60
          MSIS SLS RQCPD YAFR G NL DKEF YL+TVIVT  VH+GFGRRLPCHQVTNFLDL
Sbjct: 1  MSISPSLSPRQCPDRYAFRAGQNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL 60

Query: 61 PALGRRQPPYMVLRLCGDLCF 82
          PALGRRQPPYMVLRLCGDLCF
Sbjct: 61 PALGRRQPPYMVLRLCGDLCF 81

[Close]

BLAST of Cmc11g0308291 vs. ExPASy Swiss-Prot
Match: Q3BAI2 (Uncharacterized protein ORF91 OS=Phalaenopsis aphrodite subsp. formosana OX=308872 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.7e-35
Identity = 69/81 (85.19%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1  MSISSSLSSRQCPDCYAFRTGWNLLDKEFCYLKTVIVTTVVHQGFGRRLPCHQVTNFLDL 60
          MSIS SLS RQCPD YAFR G NL DKEF YL+TV+VT  VH+GFGRRLPCHQVTNFLDL
Sbjct: 10 MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVLVTAAVHRGFGRRLPCHQVTNFLDL 69

Query: 61 PALGRRQPPYMVLRLCGDLCF 82
          PALGRRQPPYMVLRLCGDLCF
Sbjct: 70 PALGRRQPPYMVLRLCGDLCF 90

[Close]

BLAST of Cmc11g0308291 vs. ExPASy TrEMBL
Match: A0A5D2HGT3 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A01G001200v1 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.4e-34
Identity = 71/81 (87.65%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1  MSISSSLSSRQCPDCYAFRTGWNLLDKEFCYLKTVIVTTVVHQGFGRRLPCHQVTNFLDL 60
          MSIS SLS RQCPD YAFR G NL DKEFCYL+TVIVT  VH GFGRRLPCHQVTNFLDL
Sbjct: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFCYLRTVIVTAAVHWGFGRRLPCHQVTNFLDL 60

Query: 61 PALGRRQPPYMVLRLCGDLCF 82
          PALGRRQPPYMVLRLCGDLCF
Sbjct: 61 PALGRRQPPYMVLRLCGDLCF 81

[Close]

BLAST of Cmc11g0308291 vs. ExPASy TrEMBL
Match: A0A5D2RJB3 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A02G170300v1 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.9e-33
Identity = 70/81 (86.42%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1  MSISSSLSSRQCPDCYAFRTGWNLLDKEFCYLKTVIVTTVVHQGFGRRLPCHQVTNFLDL 60
          MSIS SLS RQCPD YAFR G NL DKEF YL+TVIVT  VH+GFGRRLPCHQVTNFLDL
Sbjct: 1  MSISPSLSPRQCPDRYAFRAGQNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL 60

Query: 61 PALGRRQPPYMVLRLCGDLCF 82
          PALGRRQPPYMVLRLCGDLCF
Sbjct: 61 PALGRRQPPYMVLRLCGDLCF 81

[Close]

BLAST of Cmc11g0308291 vs. ExPASy TrEMBL
Match: A0A5N6N5S8 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_25331 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.8e-33
Identity = 70/81 (86.42%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1   MSISSSLSSRQCPDCYAFRTGWNLLDKEFCYLKTVIVTTVVHQGFGRRLPCHQVTNFLDL 60
           MSIS SLS RQCPD YAFR G NL DKEF YL+TVIVT  VH+GFGRRLPCHQVTNFLDL
Sbjct: 311 MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL 370

Query: 61  PALGRRQPPYMVLRLCGDLCF 82
           PALGRRQPPYMVLRLCGDLCF
Sbjct: 371 PALGRRQPPYMVLRLCGDLCF 391

[Close]

BLAST of Cmc11g0308291 vs. ExPASy TrEMBL
Match: A0A2G2W356 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_18514 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.8e-33
Identity = 70/81 (86.42%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1  MSISSSLSSRQCPDCYAFRTGWNLLDKEFCYLKTVIVTTVVHQGFGRRLPCHQVTNFLDL 60
          MSIS SLS RQCPD YAFR G NL DKEF YL+TVIVT  VH+GFGRRLPCHQVTNFLDL
Sbjct: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL 60

Query: 61 PALGRRQPPYMVLRLCGDLCF 82
          PALGRRQPPYMVLRLCGDLCF
Sbjct: 61 PALGRRQPPYMVLRLCGDLCF 81

[Close]

BLAST of Cmc11g0308291 vs. ExPASy TrEMBL
Match: A0A0S3R736 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G442300 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.8e-33
Identity = 70/81 (86.42%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1  MSISSSLSSRQCPDCYAFRTGWNLLDKEFCYLKTVIVTTVVHQGFGRRLPCHQVTNFLDL 60
          MSIS SLS RQCPD YAFR G NL DKEF YL+TVIVT  VH+GFGRRLPCHQVTNFLDL
Sbjct: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL 60

Query: 61 PALGRRQPPYMVLRLCGDLCF 82
          PALGRRQPPYMVLRLCGDLCF
Sbjct: 61 PALGRRQPPYMVLRLCGDLCF 81

The following BLAST results are available for this feature:

BLAST of Cmc11g0308291 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG4151867.1	5.4e-34	88.89	hypothetical protein ERO13_D04G096660v2, partial [Gossypium hirsutum]	[more]
TYH29308.1	7.1e-34	87.65	hypothetical protein ES288_A01G001200v1 [Gossypium darwinii]	[more]
KAG4109276.1	2.1e-33	87.65	hypothetical protein ERO13_1Z056500v2 [Gossypium hirsutum]	[more]
KAG2642311.1	6.0e-33	83.95	hypothetical protein PVAP13_2KG284596 [Panicum virgatum]	[more]
TYI40543.1	6.0e-33	86.42	hypothetical protein ES332_A02G170300v1 [Gossypium tomentosum]	[more]

BLAST of Cmc11g0308291 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3BAI2	1.7e-35	85.19	Uncharacterized protein ORF91 OS=Phalaenopsis aphrodite subsp. formosana OX=3088...	[more]

BLAST of Cmc11g0308291 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D2HGT3	3.4e-34	87.65	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A01G001200v1 PE=...	[more]
A0A5D2RJB3	2.9e-33	86.42	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A02G170300v1 P...	[more]
A0A5N6N5S8	3.8e-33	86.42	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_25331 PE=4 SV=1	[more]
A0A2G2W356	3.8e-33	86.42	Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_18514 PE=4 SV=1	[more]
A0A0S3R736	3.8e-33	86.42	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G...	[more]

BLAST of Cmc11g0308291 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0308291.1	Cmc11g0308291.1	mRNA