Cmc11g0307991 (gene) Melon (Charmono) v1.1

Overview
NameCmc11g0307991
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRab3 GTPase-activating protein catalytic subunit
LocationCMiso1.1chr11: 29159518 .. 29161738 (+)
RNA-Seq ExpressionCmc11g0307991
SyntenyCmc11g0307991
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTTTTTAATTATTATTTTATAAAAGAGAAGAAAACAAAGAAATATCTTTCCCGATGACCCTCCACCTACCAATCTCACATTAAACAAAAGCCCTAACCTTCTCCTCCTTCATGTCTCCCATGTGCCGCTTTTTTCCTGTTTAGAAAGCAAAATCAATGGCGGAGGCTATAATTTCAACCACGATTTACAATCAAAATCATCTCTTTCTTTCATTTCTGTATTTTGATTGATTGAATATTTCTTTGAGTTTTGAGTTTAGGAACTGATATGGATGAAAGGTGTTCGTTAATGGCGGAAATGAAAGAAGAATTAAAGAGAAGGGGTAAGGGGTAAGGGGAAGAGCTGCAAGAACCATGGCTATGTCTATGGCTATGGCGACCAGATCTACAAAATCTTCATCAGATTCGTTTTCTTATTATTATATTAAGCTTCATAATATCATACAGAAAGAGAAAGAAAAAGAAAAAGAAAAAAACTAACAAAGCCCTTGACTCAAATGAAATTCACAACAGAGCAGAAATTTAATCATTCAAAGCGCAAACTAATTTTTTTTTCCTCCCAATATTTGCAGAAATCAAACCCATACCCACCCAAATAACTGTTCTTCCGGCCTAGATTTTTAGCTAAAAACTTACAATACACAGAATTTCTTCCCCGTTAAACAAACCTGGATCATCATAAATACACGATATTATATATATATATATATATATATATATATATATGATATACTTCTTGATTTTAATCTGATTTACCTGTCTCGTTGGCTCGATTTTCCGATCTACCACCGTTTAAAAAAATCACGGCGGTTCAGATCTGGACGGATCGAGGGAGACGTTAGAAAAGATGAGAGATGAGAGAAATGGATGAGAGATTAATTTTTGTTTCGAATTTTTTGATGGATTTCAGATCCAAATTCAAGATCTGGTGAAGAACTCATGCGTCGAGCCGAAGCAAACGCCTCAGATCTCTGGTAGCCGAGTCGTCAACGATGGTGGATACGTGTTTCTTCTTCGAAAACGATGGTAATGGAAGAGAACTAGGAGACGGCGACATCGAAAACGCCGATCCGGCGTACACATCGGCTTTTCCGGCTATCGGACACCTCACGTCGACGATCCGGATTTGTTTCGCAACCGTTTCCGGCGCCGGTCCCAACCTATCGGTTCCACACACGACAATATTATCACCTTCCTTCTTCAGTGCTTCGCTCTTGATCTTCGAATCAAGAGATTCACCTCGCCTCAAGATCGTAACCTTTTCCATCACCAAACTATTTTTCATCGCCTTCAAATCGTCGGAACTCGATCTCTTTGAGACCGACGGCTCTGAATGATTCGGAAAAAATCTCTTCCGCTGCTCCGGCCGCTCCGAACGAGCCACCGACTTCCTGTTAGATCTAGGATTATAGTTGTTACAAATATTGGAATCATAGTTTCCATAAGAACTCCTCCGACGACAAAACGCTGCCGGTGGAACTCTGATCCTTTCGATCAAACAATCCTGAGGTCTTAAAATCTCAGTCCCCATGAATGAAAGAAGACAAAATCCCTAAGAAATCTTCCAAAAAATACAAACAAAAAAGAAAAAAAAATGGTTTCAAAAACCAAAAGATCAAACGCTACGGGGCTGATGAGTTCCTTTTCTCTGAAACTAAGAGCTTTAACCCTCGCTTCTTCTCCACACAGAGGAACAACAGCAACAACAAGACGTGAAAGATGAAGAAGAAGGGTATTAGCGTCTTTTCAACTTTTCCTTTTCTCTATTTTTTTTTTCCCCGGATTCCCTCTTTGTATTTCTGCTCTGCAAGGCTTTGTTTGGTCTTCAGATTGCATGAGGAGAGATATATAGCGAAGGAAAATAGAAATGAGGATAGACTATACGGTGTCGTTTCGCGGAAGGTGAAATATTAAACTAAAATTTATTTATTGGAGAAAAAAATAATAAAAAGAAAAGAAAAGAGCGTTGGTCTAATCTTAATCTCACCGACCCCTCGCAAAATGACGCGTGAAGACAGAAAGTGATTGGCCGCCTTGTTTGAGCGAGAAGAGAGAGTGTGTGTTGGATACGTGGCAGAATATGACTCGGTCTTGGAAGGTGGGGCCAACTCACACGTACCCTGTTTTAACGGGAACCGTCAAGTAGAAGTTACGGAGTTTAGAATTCACGTCGTCGCTGGCTTGAACTATTTCTTGGATGACGCCGTTGGTGGTGGGGGT

mRNA sequence

GCTTTTTTAATTATTATTTTATAAAAGAGAAGAAAACAAAGAAATATCTTTCCCGATGACCCTCCACCTACCAATCTCACATTAAACAAAAGCCCTAACCTTCTCCTCCTTCATGTCTCCCATGTGCCGCTTTTTTCCTGTTTAGAAAGCAAAATCAATGGCGGAGGCTATAATTTCAACCACGATTTACAATCAAAATCATCTCTTTCTTTCATTTCTGTATTTTGATTGATTGAATATTTCTTTGAGTTTTGAGTTTAGGAACTGATATGGATGAAAGGTGTTCGTTAATGGCGGAAATGAAAGAAGAATTAAAGAGAAGGGGTAAGGGGTAAGGGGAAGAGCTGCAAGAACCATGGCTATGTCTATGGCTATGGCGACCAGATCTACAAAATCTTCATCAGATTCGTTTTCTTATTATTATATTAAGCTTCATAATATCATACAGAAAGAGAAAGAAAAAGAAAAAGAAAAAAACTAACAAAGCCCTTGACTCAAATGAAATTCACAACAGAGCAGAAATTTAATCATTCAAAGCGCAAACTAATTTTTTTTTCCTCCCAATATTTGCAGAAATCAAACCCATACCCACCCAAATAACTGTTCTTCCGGCCTAGATTTTTAGCTAAAAACTTACAATACACAGAATTTCTTCCCCGTTAAACAAACCTGGATCATCATAAATACACGATATTATATATATATATATATATATATATATATATATGATATACTTCTTGATTTTAATCTGATTTACCTGTCTCGTTGGCTCGATTTTCCGATCTACCACCGTTTAAAAAAATCACGGCGGTTCAGATCTGGACGGATCGAGGGAGACGTTAGAAAAGATGAGAGATGAGAGAAATGGATGAGAGATTAATTTTTGTTTCGAATTTTTTGATGGATTTCAGATCCAAATTCAAGATCTGGTGAAGAACTCATGCGTCGAGCCGAAGCAAACGCCTCAGATCTCTGGTAGCCGAGTCGTCAACGATGGTGGATACGTGTTTCTTCTTCGAAAACGATGGTAATGGAAGAGAACTAGGAGACGGCGACATCGAAAACGCCGATCCGGCGTACACATCGGCTTTTCCGGCTATCGGACACCTCACGTCGACGATCCGGATTTGTTTCGCAACCGTTTCCGGCGCCGGTCCCAACCTATCGGTTCCACACACGACAATATTATCACCTTCCTTCTTCAGTGCTTCGCTCTTGATCTTCGAATCAAGAGATTCACCTCGCCTCAAGATCGTAACCTTTTCCATCACCAAACTATTTTTCATCGCCTTCAAATCGTCGGAACTCGATCTCTTTGAGACCGACGGCTCTGAATGATTCGGAAAAAATCTCTTCCGCTGCTCCGGCCGCTCCGAACGAGCCACCGACTTCCTGTTAGATCTAGGATTATAGTTGTTACAAATATTGGAATCATAGTTTCCATAAGAACTCCTCCGACGACAAAACGCTGCCGGTGGAACTCTGATCCTTTCGATCAAACAATCCTGAGGTCTTAAAATCTCAGTCCCCATGAATGAAAGAAGACAAAATCCCTAAGAAATCTTCCAAAAAATACAAACAAAAAAGAAAAAAAAATGGTTTCAAAAACCAAAAGATCAAACGCTACGGGGCTGATGAGTTCCTTTTCTCTGAAACTAAGAGCTTTAACCCTCGCTTCTTCTCCACACAGAGGAACAACAGCAACAACAAGACGTGAAAGATGAAGAAGAAGGGTATTAGCGTCTTTTCAACTTTTCCTTTTCTCTATTTTTTTTTTCCCCGGATTCCCTCTTTGTATTTCTGCTCTGCAAGGCTTTGTTTGGTCTTCAGATTGCATGAGGAGAGATATATAGCGAAGGAAAATAGAAATGAGGATAGACTATACGGTGTCGTTTCGCGGAAGGTGAAATATTAAACTAAAATTTATTTATTGGAGAAAAAAATAATAAAAAGAAAAGAAAAGAGCGTTGGTCTAATCTTAATCTCACCGACCCCTCGCAAAATGACGCGTGAAGACAGAAAGTGATTGGCCGCCTTGTTTGAGCGAGAAGAGAGAGTGTGTGTTGGATACGTGGCAGAATATGACTCGGTCTTGGAAGGTGGGGCCAACTCACACGTACCCTGTTTTAACGGGAACCGTCAAGTAGAAGTTACGGAGTTTAGAATTCACGTCGTCGCTGGCTTGAACTATTTCTTGGATGACGCCGTTGGTGGTGGGGGT

Coding sequence (CDS)

ATGGTGGATACGTGTTTCTTCTTCGAAAACGATGGTAATGGAAGAGAACTAGGAGACGGCGACATCGAAAACGCCGATCCGGCGTACACATCGGCTTTTCCGGCTATCGGACACCTCACGTCGACGATCCGGATTTGTTTCGCAACCGTTTCCGGCGCCGGTCCCAACCTATCGGTTCCACACACGACAATATTATCACCTTCCTTCTTCAGTGCTTCGCTCTTGATCTTCGAATCAAGAGATTCACCTCGCCTCAAGATCGTAACCTTTTCCATCACCAAACTATTTTTCATCGCCTTCAAATCGTCGGAACTCGATCTCTTTGAGACCGACGGCTCTGAATGA

Protein sequence

MVDTCFFFENDGNGRELGDGDIENADPAYTSAFPAIGHLTSTIRICFATVSGAGPNLSVPHTTILSPSFFSASLLIFESRDSPRLKIVTFSITKLFFIAFKSSELDLFETDGSE
Homology
[Close]
BLAST of Cmc11g0307991 vs. NCBI nr
Match: EEF45445.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 111.3 bits (277), Expect = 5.5e-21
Identity = 60/97 (61.86%), Postives = 67/97 (69.07%), Query Frame = 0 

Query: 2   VDTCFFFENDGNGRELGDGDIENADPAYTSAFPAIGHLTSTIRICFATVSGAGPNLSVPH 61
           + TCFF E DGNG ELG GD    DPAY S FP IG L STIRIC  T+SG+GP+ SVP 
Sbjct: 32  IGTCFFLEKDGNGSELGAGDTAKPDPAYMSHFPVIGDLRSTIRICLGTISGSGPSRSVPA 91

Query: 62  TTILSPSFFS----ASLLIFESRDSPRLKIVTFSITK 95
           TTI  PSF      + +LI ES DSPR KIVTFSIT+
Sbjct: 92  TTI--PSFLRNGAVSVVLILESSDSPRRKIVTFSITR 126

[Close]
BLAST of Cmc11g0307991 vs. NCBI nr
Match: CAB4263812.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 69.3 bits (168), Expect = 2.4e-08
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 0 

Query: 3  DTCFFFENDGNGRELGDGDIENADPAYTSAFPAIGHLTSTIRICFATV 51
          DTCFFFENDG+G  LG G+  NADPAY S FP+ G   STIR CF+ V
Sbjct: 46 DTCFFFENDGSGSALGSGENANADPAYMSVFPSTGGFRSTIRTCFSIV 93

[Close]
BLAST of Cmc11g0307991 vs. NCBI nr
Match: CAB4294401.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 65.1 bits (157), Expect = 4.5e-07
Identity = 30/48 (62.50%), Postives = 32/48 (66.67%), Query Frame = 0 

Query: 3  DTCFFFENDGNGRELGDGDIENADPAYTSAFPAIGHLTSTIRICFATV 51
          DTCFFFENDG+G  L   D  NADPAY S FP+ G   STIR CF  V
Sbjct: 46 DTCFFFENDGSGSALDSDDNANADPAYMSVFPSTGGFRSTIRTCFGIV 93

[Close]
BLAST of Cmc11g0307991 vs. NCBI nr
Match: KAG0501127.1 (hypothetical protein HPP92_001199 [Vanilla planifolia])

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-05
Identity = 41/94 (43.62%), Postives = 53/94 (56.38%), Query Frame = 0 

Query: 7   FFENDGNGRELGDGDIENADPAYTSAFPAIGHLTSTIRICFATVSGAGPNLS-------V 66
           FFEN+G+G +LG+GD EN+DPAY+S+         T RI     SG+G   S       V
Sbjct: 49  FFENEGSGSDLGEGDDENSDPAYSSS------QRGTSRIRLGITSGSGSRRSVRNDSSHV 108

Query: 67  PHTTILSPSFFSASLLIFESRDSPRLKIVTFSIT 94
           P TT L PS FS+++    S  SP   IVTF I+
Sbjct: 109 PSTTPLDPSNFSSTV---PSSVSPLFSIVTFPIS 133

[Close]
BLAST of Cmc11g0307991 vs. NCBI nr
Match: GER30167.1 (Rab3 GTPase-activating protein catalytic subunit [Striga asiatica])

HSP 1 Score: 54.7 bits (130), Expect = 6.1e-04
Identity = 40/91 (43.96%), Postives = 47/91 (51.65%), Query Frame = 0 

Query: 8   FENDGNGRELGDGDIENADPAYTSAFPAIGHLTSTIRICFATVSG-AGPNLSVPHTTILS 67
           F  +G GR  GDGD E ADPAYTS            RICF  +SG +GP   VP   I S
Sbjct: 94  FTAEGRGRARGDGDREKADPAYTSWKDG-----GDRRICFGIISGDSGPIRLVPRNAISS 153

Query: 68  PSFFSASLLI--FESRDSPRLKIVTFSITKL 96
             F     ++   ES DSP L+ VT  IT+L
Sbjct: 154 SGFDFPPFILDANESSDSPLLRRVTCPITRL 179

[Close]
BLAST of Cmc11g0307991 vs. ExPASy TrEMBL
Match: A0A0A0K9L3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G062320 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.6e-53
Identity = 110/114 (96.49%), Postives = 110/114 (96.49%), Query Frame = 0 

Query: 1   MVDTCFFFENDGNGRELGDGDIENADPAYTSAFPAIGHLTSTIRICFATVSGAGPNLSVP 60
           M DTCFFFENDGNGRELGDGDIENADPAYTSAFPAIG  TSTIRICFATVSGAGPNLSVP
Sbjct: 1   MADTCFFFENDGNGRELGDGDIENADPAYTSAFPAIGLRTSTIRICFATVSGAGPNLSVP 60

Query: 61  HTTILSPSFFSASLLIFESRDSPRLKIVTFSITKLFFIAFKSSELDLFETDGSE 115
           HTTILSPSFF ASLLIFESRDSPRLKIVTFSITKLFFIAFKSSELDLFETDGSE
Sbjct: 61  HTTILSPSFFRASLLIFESRDSPRLKIVTFSITKLFFIAFKSSELDLFETDGSE 114

[Close]
BLAST of Cmc11g0307991 vs. ExPASy TrEMBL
Match: B9RSW2 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0679050 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.7e-21
Identity = 60/97 (61.86%), Postives = 67/97 (69.07%), Query Frame = 0 

Query: 2   VDTCFFFENDGNGRELGDGDIENADPAYTSAFPAIGHLTSTIRICFATVSGAGPNLSVPH 61
           + TCFF E DGNG ELG GD    DPAY S FP IG L STIRIC  T+SG+GP+ SVP 
Sbjct: 32  IGTCFFLEKDGNGSELGAGDTAKPDPAYMSHFPVIGDLRSTIRICLGTISGSGPSRSVPA 91

Query: 62  TTILSPSFFS----ASLLIFESRDSPRLKIVTFSITK 95
           TTI  PSF      + +LI ES DSPR KIVTFSIT+
Sbjct: 92  TTI--PSFLRNGAVSVVLILESSDSPRRKIVTFSITR 126

[Close]
BLAST of Cmc11g0307991 vs. ExPASy TrEMBL
Match: A0A6J5TJT7 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS4947 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.2e-08
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 0 

Query: 3  DTCFFFENDGNGRELGDGDIENADPAYTSAFPAIGHLTSTIRICFATV 51
          DTCFFFENDG+G  LG G+  NADPAY S FP+ G   STIR CF+ V
Sbjct: 46 DTCFFFENDGSGSALGSGENANADPAYMSVFPSTGGFRSTIRTCFSIV 93

[Close]
BLAST of Cmc11g0307991 vs. ExPASy TrEMBL
Match: A0A6J5W2A6 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS4969 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.2e-07
Identity = 30/48 (62.50%), Postives = 32/48 (66.67%), Query Frame = 0 

Query: 3  DTCFFFENDGNGRELGDGDIENADPAYTSAFPAIGHLTSTIRICFATV 51
          DTCFFFENDG+G  L   D  NADPAY S FP+ G   STIR CF  V
Sbjct: 46 DTCFFFENDGSGSALDSDDNANADPAYMSVFPSTGGFRSTIRTCFGIV 93

[Close]
BLAST of Cmc11g0307991 vs. ExPASy TrEMBL
Match: A0A5A7PD28 (Rab3 GTPase-activating protein catalytic subunit OS=Striga asiatica OX=4170 GN=STAS_06094 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.0e-04
Identity = 40/91 (43.96%), Postives = 47/91 (51.65%), Query Frame = 0 

Query: 8   FENDGNGRELGDGDIENADPAYTSAFPAIGHLTSTIRICFATVSG-AGPNLSVPHTTILS 67
           F  +G GR  GDGD E ADPAYTS            RICF  +SG +GP   VP   I S
Sbjct: 94  FTAEGRGRARGDGDREKADPAYTSWKDG-----GDRRICFGIISGDSGPIRLVPRNAISS 153

Query: 68  PSFFSASLLI--FESRDSPRLKIVTFSITKL 96
             F     ++   ES DSP L+ VT  IT+L
Sbjct: 154 SGFDFPPFILDANESSDSPLLRRVTCPITRL 179

The following BLAST results are available for this feature:
BLAST of Cmc11g0307991 vs. NCBI nr
Match NameE-valueIdentityDescription
EEF45445.15.5e-2161.86conserved hypothetical protein [Ricinus communis][more]
CAB4263812.12.4e-0864.58unnamed protein product [Prunus armeniaca][more]
CAB4294401.14.5e-0762.50unnamed protein product [Prunus armeniaca][more]
KAG0501127.11.1e-0543.62hypothetical protein HPP92_001199 [Vanilla planifolia][more]
GER30167.16.1e-0443.96Rab3 GTPase-activating protein catalytic subunit [Striga asiatica][more]
BLAST of Cmc11g0307991 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc11g0307991 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9L31.6e-5396.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G062320 PE=4 SV=1[more]
B9RSW22.7e-2161.86Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0679050 PE=4 SV=1[more]
A0A6J5TJT71.2e-0864.58Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS4947 PE=4 SV... [more]
A0A6J5W2A62.2e-0762.50Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS4969 PE=4... [more]
A0A5A7PD283.0e-0443.96Rab3 GTPase-activating protein catalytic subunit OS=Striga asiatica OX=4170 GN=S... [more]
BLAST of Cmc11g0307991 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc11g0307991.1Cmc11g0307991.1mRNA