Cmc11g0307021 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0307021
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr11: 28516403 .. 28516882 (-)
RNA-Seq Expression	Cmc11g0307021
Synteny	Cmc11g0307021

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGATAATGAAGTCTGGGATCTTGTAGAATTGCCTAAAGAAAGTAAAAGAATAGAGTGTAAATGGGTCTTTAAGACCAAACGTGACTCAAATGGCAATATTGAACAATACAAGGCTAGACTTGTAACCAAAGGTTATATTCAGAAAGATGACATTGGCTACAAAGAGACTTTTTCTCCTGTCTCGAAAAAGAACTCATTAAGAATTATTATGGCTTTGGTAGCTCATTATGATTTAGAGCTTCATCAAATGGATGTGAAAACCGCCTTTCTAAATGGAAATTTAGATGAAGAAGTGTTCATGGATCAACCAGAAGGTTTTATGGTTGAAGGAAAGGAACATATGGTGTGTAAATTAAAGATGTCAATATGGTTAAAGGACTTAAACAAGCTTCTAGACAGTGGTATCTTAAGTTTAATGATACCATCACATCTTTTGGTTTTAAAGAAAACATCATTGATCGATGTATATACCTAA

mRNA sequence

ATGAATGATAATGAAGTCTGGGATCTTGTAGAATTGCCTAAAGAAAGTAAAAGAATAGAGTGTAAATGGGTCTTTAAGACCAAACGTGACTCAAATGGCAATATTGAACAATACAAGGCTAGACTTGTAACCAAAGGTTATATTCAGAAAGATGACATTGGCTACAAAGAGACTTTTTCTCCTGTCTCGAAAAAGAACTCATTAAGAATTATTATGGCTTTGGTAGCTCATTATGATTTAGAGCTTCATCAAATGGATGTGAAAACCGCCTTTCTAAATGGAAATTTAGATGAAGAAGTGTTCATGGATCAACCAGAAGGTTTTATGGTTGAAGGAAAGGAACATATGGTGTGTAAATTAAAGATGTCAATATGGTTAAAGGACTTAAACAAGCTTCTAGACAGTGGTATCTTAAGTTTAATGATACCATCACATCTTTTGGTTTTAAAGAAAACATCATTGATCGATGTATATACCTAA

Coding sequence (CDS)

ATGAATGATAATGAAGTCTGGGATCTTGTAGAATTGCCTAAAGAAAGTAAAAGAATAGAGTGTAAATGGGTCTTTAAGACCAAACGTGACTCAAATGGCAATATTGAACAATACAAGGCTAGACTTGTAACCAAAGGTTATATTCAGAAAGATGACATTGGCTACAAAGAGACTTTTTCTCCTGTCTCGAAAAAGAACTCATTAAGAATTATTATGGCTTTGGTAGCTCATTATGATTTAGAGCTTCATCAAATGGATGTGAAAACCGCCTTTCTAAATGGAAATTTAGATGAAGAAGTGTTCATGGATCAACCAGAAGGTTTTATGGTTGAAGGAAAGGAACATATGGTGTGTAAATTAAAGATGTCAATATGGTTAAAGGACTTAAACAAGCTTCTAGACAGTGGTATCTTAAGTTTAATGATACCATCACATCTTTTGGTTTTAAAGAAAACATCATTGATCGATGTATATACCTAA

Protein sequence

MNDNEVWDLVELPKESKRIECKWVFKTKRDSNGNIEQYKARLVTKGYIQKDDIGYKETFSPVSKKNSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKLKMSIWLKDLNKLLDSGILSLMIPSHLLVLKKTSLIDVYT

Homology

[Close]

BLAST of Cmc11g0307021 vs. NCBI nr
Match: KAA0033370.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYJ96654.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 241.5 bits (615), Expect = 4.9e-60
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MNDNEVWDLVELPKESKRIECKWVFKTKRDSNGNIEQYKARLVTKGYIQKDDIGYKETFS 60
           MNDNEVWDLVELPKESKRIECKWVFKTKRDSNGNIEQYKARLVTKGYIQKDDIGYKETFS
Sbjct: 1   MNDNEVWDLVELPKESKRIECKWVFKTKRDSNGNIEQYKARLVTKGYIQKDDIGYKETFS 60

Query: 61  PVSKKNSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMV 118
           PVSKKNSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHM+
Sbjct: 61  PVSKKNSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMM 117

[Close]

BLAST of Cmc11g0307021 vs. NCBI nr
Match: TYK04469.1 (copia-like pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 236.5 bits (602), Expect = 1.6e-58
Identity = 114/125 (91.20%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MNDNEVWDLVELPKESKRIECKWVFKTKRDSNGNIEQYKARLVTKGYIQKDDIGYKETFS 60
           MNDNEVWDLVELPKESKR+ CKWVFKTKRDSNGNIE+YKARLV KGY QKD I YKETFS
Sbjct: 535 MNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFS 594

Query: 61  PVSKKNSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKL 120
           PVSKK+SLRIIMALVAHYDLEL+QMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKL
Sbjct: 595 PVSKKDSLRIIMALVAHYDLELYQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKL 654

Query: 121 KMSIW 126
           K SI+
Sbjct: 655 KRSIY 659

[Close]

BLAST of Cmc11g0307021 vs. NCBI nr
Match: KAA0067113.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 236.1 bits (601), Expect = 2.1e-58
Identity = 114/125 (91.20%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MNDNEVWDLVELPKESKRIECKWVFKTKRDSNGNIEQYKARLVTKGYIQKDDIGYKETFS 60
           MNDNEVWDLVELPKESKR+ CKWVFKTKRDSN NIE+YKARLV KGY QKD I YKETFS
Sbjct: 1   MNDNEVWDLVELPKESKRVGCKWVFKTKRDSNDNIERYKARLVAKGYTQKDGIDYKETFS 60

Query: 61  PVSKKNSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKL 120
           PVSKK+SLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKL
Sbjct: 61  PVSKKDSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKL 120

Query: 121 KMSIW 126
           K SI+
Sbjct: 121 KRSIY 125

[Close]

BLAST of Cmc11g0307021 vs. NCBI nr
Match: KAA0061857.1 (copia-like pol polyprotein [Cucumis melo var. makuwa] >TYK15399.1 copia-like pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 234.6 bits (597), Expect = 6.0e-58
Identity = 111/125 (88.80%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MNDNEVWDLVELPKESKRIECKWVFKTKRDSNGNIEQYKARLVTKGYIQKDDIGYKETFS 60
           MNDNEVWDLVELPKESKR+ CKWVF+TKRDSNGNIE+YKARLV KGY QKD I YKETFS
Sbjct: 497 MNDNEVWDLVELPKESKRVGCKWVFETKRDSNGNIERYKARLVAKGYTQKDGIDYKETFS 556

Query: 61  PVSKKNSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKL 120
           PVSKK+SLRIIMAL+AHYDL++HQMDVK AFLNGNLDEEVFMDQPEGFMVEGKEHMVCKL
Sbjct: 557 PVSKKDSLRIIMALIAHYDLKIHQMDVKIAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKL 616

Query: 121 KMSIW 126
           KMSI+
Sbjct: 617 KMSIY 621

[Close]

BLAST of Cmc11g0307021 vs. NCBI nr
Match: KAA0031640.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 234.6 bits (597), Expect = 6.0e-58
Identity = 112/121 (92.56%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 1   MNDNEVWDLVELPKESKRIECKWVFKTKRDSNGNIEQYKARLVTKGYIQKDDIGYKETFS 60
           MNDNEVWDLVE PKESKR+ CKWVFKTKRDSNGNIE+YKARLV KGY QKDDI YKETFS
Sbjct: 383 MNDNEVWDLVEFPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDDIDYKETFS 442

Query: 61  PVSKKNSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKL 120
           PVSKK+SLRIIMALVAHYDLEL+QMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKL
Sbjct: 443 PVSKKDSLRIIMALVAHYDLELYQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKL 502

Query: 121 K 122
           K
Sbjct: 503 K 503

[Close]

BLAST of Cmc11g0307021 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.8e-34
Identity = 68/125 (54.40%), Postives = 93/125 (74.40%), Query Frame = 0


Query: 1   MNDNEVWDLVELPKESKRIECKWVFKTKRDSNGNIEQYKARLVTKGYIQKDDIGYKETFS 60
           +  N  + LVELPK  + ++CKWVFK K+D +  + +YKARLV KG+ QK  I + E FS
Sbjct: 837 LQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFS 896

Query: 61  PVSKKNSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKL 120
           PV K  S+R I++L A  DLE+ Q+DVKTAFL+G+L+EE++M+QPEGF V GK+HMVCKL
Sbjct: 897 PVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKL 956

Query: 121 KMSIW 126
             S++
Sbjct: 957 NKSLY 961

[Close]

BLAST of Cmc11g0307021 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 117.1 bits (292), Expect = 1.8e-25
Identity = 55/122 (45.08%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 4    NEVWDLVELPKESKRIECKWVFKTKRDSNGNIEQYKARLVTKGYIQKDDIGYKETFSPVS 63
            N  W + + P+    ++ +WVF  K +  GN  +YKARLV +G+ QK  I Y+ETF+PV+
Sbjct: 920  NNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVA 979

Query: 64   KKNSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKLKMS 123
            + +S R I++LV  Y+L++HQMDVKTAFLNG L EE++M  P+G  +      VCKL  +
Sbjct: 980  RISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG--ISCNSDNVCKLNKA 1039

Query: 124  IW 126
            I+
Sbjct: 1040 IY 1039

[Close]

BLAST of Cmc11g0307021 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.0e-24
Identity = 61/159 (38.36%), Postives = 93/159 (58.49%), Query Frame = 0


Query: 4    NEVWDLVELPKESKRI-ECKWVFKTKRDSNGNIEQYKARLVTKGYIQKDDIGYKETFSPV 63
            N  WDLV  P     I  C+W+F  K +S+G++ +YKARLV KGY Q+  + Y ETFSPV
Sbjct: 982  NHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPV 1041

Query: 64   SKKNSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKLKM 123
             K  S+RI++ +       + Q+DV  AFL G L ++V+M QP GF+ + + + VCKL+ 
Sbjct: 1042 IKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRK 1101

Query: 124  SI---------WLKDL-NKLLDSGILSLMIPSHLLVLKK 152
            ++         W  +L N LL  G ++ +  + L VL++
Sbjct: 1102 ALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQR 1140

[Close]

BLAST of Cmc11g0307021 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.5e-24
Identity = 62/159 (38.99%), Postives = 92/159 (57.86%), Query Frame = 0


Query: 4    NEVWDLVELPKESKRI-ECKWVFKTKRDSNGNIEQYKARLVTKGYIQKDDIGYKETFSPV 63
            N  WDLV  P  S  I  C+W+F  K +S+G++ +YKARLV KGY Q+  + Y ETFSPV
Sbjct: 965  NHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPV 1024

Query: 64   SKKNSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKLKM 123
             K  S+RI++ +       + Q+DV  AFL G L +EV+M QP GF+ + +   VC+L+ 
Sbjct: 1025 IKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRK 1084

Query: 124  SI---------WLKDLNK-LLDSGILSLMIPSHLLVLKK 152
            +I         W  +L   LL  G ++ +  + L VL++
Sbjct: 1085 AIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQR 1123

[Close]

BLAST of Cmc11g0307021 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.8e-11
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 1   MNDNEVWDLVELPKESKRIECKWVFKTKRDSNGNIEQYKARLVTKGYIQKDDIGYKETFS 60
           ++ N+ W LV  P     + CKWVFKTK  S+G +++ KARLV KG+ Q++ I + ET+S
Sbjct: 51  LSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYS 110

Query: 61  PVSKKNSLRIIM 73
           PV +  ++R I+
Sbjct: 111 PVVRTATIRTIL 122

[Close]

BLAST of Cmc11g0307021 vs. ExPASy TrEMBL
Match: A0A5A7SR28 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26G00200 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.4e-60
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MNDNEVWDLVELPKESKRIECKWVFKTKRDSNGNIEQYKARLVTKGYIQKDDIGYKETFS 60
           MNDNEVWDLVELPKESKRIECKWVFKTKRDSNGNIEQYKARLVTKGYIQKDDIGYKETFS
Sbjct: 1   MNDNEVWDLVELPKESKRIECKWVFKTKRDSNGNIEQYKARLVTKGYIQKDDIGYKETFS 60

Query: 61  PVSKKNSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMV 118
           PVSKKNSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHM+
Sbjct: 61  PVSKKNSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMM 117

[Close]

BLAST of Cmc11g0307021 vs. ExPASy TrEMBL
Match: A0A5D3C256 (Copia-like pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00760 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 7.7e-59
Identity = 114/125 (91.20%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MNDNEVWDLVELPKESKRIECKWVFKTKRDSNGNIEQYKARLVTKGYIQKDDIGYKETFS 60
           MNDNEVWDLVELPKESKR+ CKWVFKTKRDSNGNIE+YKARLV KGY QKD I YKETFS
Sbjct: 535 MNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFS 594

Query: 61  PVSKKNSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKL 120
           PVSKK+SLRIIMALVAHYDLEL+QMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKL
Sbjct: 595 PVSKKDSLRIIMALVAHYDLELYQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKL 654

Query: 121 KMSIW 126
           K SI+
Sbjct: 655 KRSIY 659

[Close]

BLAST of Cmc11g0307021 vs. ExPASy TrEMBL
Match: A0A5A7VGA0 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001720 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.0e-58
Identity = 114/125 (91.20%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MNDNEVWDLVELPKESKRIECKWVFKTKRDSNGNIEQYKARLVTKGYIQKDDIGYKETFS 60
           MNDNEVWDLVELPKESKR+ CKWVFKTKRDSN NIE+YKARLV KGY QKD I YKETFS
Sbjct: 1   MNDNEVWDLVELPKESKRVGCKWVFKTKRDSNDNIERYKARLVAKGYTQKDGIDYKETFS 60

Query: 61  PVSKKNSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKL 120
           PVSKK+SLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKL
Sbjct: 61  PVSKKDSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKL 120

Query: 121 KMSIW 126
           K SI+
Sbjct: 121 KRSIY 125

[Close]

BLAST of Cmc11g0307021 vs. ExPASy TrEMBL
Match: A0A5A7V4M3 (Copia-like pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00420 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.9e-58
Identity = 111/125 (88.80%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MNDNEVWDLVELPKESKRIECKWVFKTKRDSNGNIEQYKARLVTKGYIQKDDIGYKETFS 60
           MNDNEVWDLVELPKESKR+ CKWVF+TKRDSNGNIE+YKARLV KGY QKD I YKETFS
Sbjct: 497 MNDNEVWDLVELPKESKRVGCKWVFETKRDSNGNIERYKARLVAKGYTQKDGIDYKETFS 556

Query: 61  PVSKKNSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKL 120
           PVSKK+SLRIIMAL+AHYDL++HQMDVK AFLNGNLDEEVFMDQPEGFMVEGKEHMVCKL
Sbjct: 557 PVSKKDSLRIIMALIAHYDLKIHQMDVKIAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKL 616

Query: 121 KMSIW 126
           KMSI+
Sbjct: 617 KMSIY 621

[Close]

BLAST of Cmc11g0307021 vs. ExPASy TrEMBL
Match: A0A5A7SLM2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G004120 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.9e-58
Identity = 112/121 (92.56%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 1   MNDNEVWDLVELPKESKRIECKWVFKTKRDSNGNIEQYKARLVTKGYIQKDDIGYKETFS 60
           MNDNEVWDLVE PKESKR+ CKWVFKTKRDSNGNIE+YKARLV KGY QKDDI YKETFS
Sbjct: 383 MNDNEVWDLVEFPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDDIDYKETFS 442

Query: 61  PVSKKNSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKL 120
           PVSKK+SLRIIMALVAHYDLEL+QMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKL
Sbjct: 443 PVSKKDSLRIIMALVAHYDLELYQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKL 502

Query: 121 K 122
           K
Sbjct: 503 K 503

[Close]

BLAST of Cmc11g0307021 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 127.5 bits (319), Expect = 9.7e-30
Identity = 61/129 (47.29%), Postives = 85/129 (65.89%), Query Frame = 0


Query: 1   MNDNEVWDLVELPKESKRIECKWVFKTKRDSNGNIEQYKARLVTKGYIQKDDIGYKETFS 60
           M     W++  LP   K I CKWV+K K +S+G IE+YKARLV KGY Q++ I + ETFS
Sbjct: 109 METTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFS 168

Query: 61  PVSKKNSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHM---- 120
           PV K  S+++I+A+ A Y+  LHQ+D+  AFLNG+LDEE++M  P G+     + +    
Sbjct: 169 PVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNA 228

Query: 121 VCKLKMSIW 126
           VC LK SI+
Sbjct: 229 VCYLKKSIY 237

[Close]

BLAST of Cmc11g0307021 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 68.2 bits (165), Expect = 7.0e-12
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 1   MNDNEVWDLVELPKESKRIECKWVFKTKRDSNGNIEQYKARLVTKGYIQKDDIGYKETFS 60
           ++ N+ W LV  P     + CKWVFKTK  S+G +++ KARLV KG+ Q++ I + ET+S
Sbjct: 51  LSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYS 110

Query: 61  PVSKKNSLRIIM 73
           PV +  ++R I+
Sbjct: 111 PVVRTATIRTIL 122

The following BLAST results are available for this feature:

BLAST of Cmc11g0307021 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033370.1	4.9e-60	99.15	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK04469.1	1.6e-58	91.20	copia-like pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0067113.1	2.1e-58	91.20	retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]	[more]
KAA0061857.1	6.0e-58	88.80	copia-like pol polyprotein [Cucumis melo var. makuwa] >TYK15399.1 copia-like pol...	[more]
KAA0031640.1	6.0e-58	92.56	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc11g0307021 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.8e-34	54.40	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.8e-25	45.08	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	2.0e-24	38.36	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	3.5e-24	38.99	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92520	9.8e-11	43.06	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc11g0307021 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SR28	2.4e-60	99.15	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3C256	7.7e-59	91.20	Copia-like pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5A7VGA0	1.0e-58	91.20	Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw...	[more]
A0A5A7V4M3	2.9e-58	88.80	Copia-like pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5A7SLM2	2.9e-58	92.56	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc11g0307021 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	9.7e-30	47.29	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	7.0e-12	43.06	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 4..125 e-value: 3.6E-40 score: 138.1
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 2..124
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 4..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0307021.1	Cmc11g0307021.1	mRNA