Cmc11g0305941 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0305941
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	DNA polymerase epsilon subunit C
Location	CMiso1.1chr11: 27218164 .. 27221294 (-)
RNA-Seq Expression	Cmc11g0305941
Synteny	Cmc11g0305941

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGATAGGCCCAAAATGTGAAAAACTGAAGTAAAATCCAGGGAGAAAAAGGACCCAAAGTTCCCTAATTTTCACAAACAACCAAACATTAACAATGGCATCATCCAAAAAATCAAGTACCGAAGCGAAGGGCAAAGAAGCGGGAACCTCAAAGCCAGCCCCCAAAGCCAAGACCCACAACAATGCCAAAAATTCCGACAAGGAAATCTCAAAGAAGAAGAAGAAGAAGAAGAAGATTAGCATTAGCACCAACAATGGCTCCGTCAAGGACAATGAGTCCTTAGCTGTTTCTCCTCCAGGAGGCTCAGCCTCTGAGGACGACGATGCCGCCGATGAAGACAAAGCCGAAACCACAAGTAGAAAACATAAGACCTCCAAATCGAAGAAAGTTAAACGGAACCATGCCAAGGAAGAAGATAATGGTTATGCCGAAGAAGAAGAAGAAGAAGCCGAGGAGAAGATTTATAAATTCCCTATGCATCGGATCAAGAAAATCATGAGGGATGAAAATTCTGATTTGCGTATTAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCTTCGGTAAGCCTTTAAACACCATCACTAACGCACGCACGCACGCACGCACCCAAAATTGCTCAATTTCAGCTCTATTGAAGAATTAGGTATTTTTCTTATGAAATTGGGTTTTCTGTGTCCGTTAACTTCTTAATTGTTGCAGGAGATGTTTCTTGTACAATTTTGCAAAGATGCATATGCATGCTGTGCTCAGGATCGCAAAAAGTCTCTTGCTTACAAGCATCTATGTAATGTTTCTGTTCTCTATTTTGATGCTCCTGTCTATTTTCCTTTGTTGTTATATGCTCCATGTTCATTTGCATATCTTGCATGGACTCATACGGTTTTGCCTTTGCTCTTCTTGTCAGTTTTCTATAATGAAAGTTAGACCTGTGAACATATTTTAAAAAGGTTAAAACTTGGATCTGAAAACAGTTGATTGGATTCCAGCTTCACTATCTTTCATGGTCATCATGACGGGGCTTTACCTTTTTATAATCTGAGCTTTTAGCATGATGGTCGTAGTAGTTTAACACGGATTGTGACCTTAGAATTAGGTTACTCCAATTACTTGGTCAAGGGACTTGAATTATGTGAGCAGTAATCTATCATACTACAGTGTTGTAGAGGATTGCCGACTTATATTATCATTGCAAAATTCTACAGCAGCTGAATCCAGCCTTTCGATAAATCATATCGTTAAGCTACATTATGTCTAGCTGGATGATTTACTCACCCTAACTATGTCTAGCGATAGGTTTCCAATAAATTCACATGTATGAGGAGGAATAATAAATAAGCAGTGGTAGCAAAGTTGATAAATTTGATACTTGAGATGGGTGTAAGTTGGTTGGGAAGGGGCACTGTAACTGTTATCAGGAGTCTTTCTTTTGGACAACTTCATGTTAGGTGGCAAGGGATAGGAAGATAGAGGATTGGAGAAGTACTTATTTGGGAGTCGAAAAAGGGGAAGGCAGTGTGAATCTATTGTGAAATTTCAATTTGGATCAGGAGAGAAAGAAAAACTTATTGATCTCTGTTAGGCCTCGAGTATTGAAGAAACCTGAGGAAGGGCATATTGGGAAAGGAAGGAAAAACAGTTACATTAATGAGGGGAGGTGGGATCCTGCATGTACTGATGTCAAAAGGCTGGTGCAGAGGGGAATAAGGCATTTGTGAAAAGGGCAGCTGATATTTTGATGGCGTTTATTCACTAGCGTGGAGGAGAAACAGCTCACTCCTGGAGGCCCTGAGTTTTCTTGATTCATTTACGTTGTTTGGCTATCTTTGCTTATCGTTCTATTTGGATTACTAGAGAGAAGGAAAACTTGTGCATCTATTCCTTTGTTTTCTTCTGTTAACCACTAATAGATGGCAAATTCAAATCTCTCTCATCTGGCTAGACAATTTTAACCAGACGATGCTGAAATTTTGATAAGTCTTCCGTTTTACTTATTGTTTCATTGTATCTGCTATTACTGTTAGTTTCAAATGTGAGAATTCAAAGGATACTTCTTTTTTTTGTTGATTGACCACATTTTGATGGTGGGGAATGTGGGAGGTTGGAAAGGAAAAAAAGAGGTCTTTTCTTCTACCCCGACCAGAGTAACCTATCTAGTTATGAAAATATGAATGTCGGATCTGATAGCTCTGGAACCATAGAGCTCTCTTCTATTAAAATTGGGAGAGGAAAAAGTAAACCCTGGTTCTTCAAGTCCAAAATAACTCGGAATCAAAACATGTATGCATTGAAAATGAAATATTCATTATGAATCTCCATTTTTTGTGTTTCTTTTTTGAGCATCATTGAGTTTCGAGGCATGTACAGTTTTCAAAATGTCAAATCAAGTGTATCCAACAAAACTGTCGTACTGAGGTTAGACCAATGGTAATTGGCATATAATTCCTCCCTTTGAGATTGGAGGTTTAATCTTCCATCCCCTACAATTATTGTACTTAACAAATGAATATACCATAATACTTCCTCCCATAGATCAATGTTTATCCTGCTTGAAATCAAAACTATACAATTTGCTTCCTTGCAATTACCAAACCATTACTTTAGATTTATTTTCTTGGAAGTAATAGTAAGATTCTCCTTTGTTGTTGCAGCATCAGTAGTTTCCAAAAGGAAGAGATACGACTTTCTTTCAGGTATATACACGTGCCTATTACATAATGCTTAAATACTGCTATTATTAGAATGACGCTTCATCTCTAAACCGAAAGACAGCCTTATAAAACGTCACAAATGTTCTTTTCCATCTCCAGATTTTGTTCCAGAGAAGTTAAAATTCGAAGACGCCTTAAAGGAAAGAAGCATGGCAGAATCAGGAAAGGACTAAGCTTCTCGATATTTTATTTTGAACACTTCATCTTGTTCTATGGATGTGTTATATATTTAGGTATCGTTCTTGTCATGTATTGAATCCTAGGAAGTTAGATACAACATACAACATACATTTTTTTTTAAACTACGTACCTGTAACATTTTTATCGAGATCTTAAATCTAATCTAACATTCATTCTAACACGATTATTCTTCTATGCATTTATTGAACTAAAAGTACTCTTTCTCTCTCTCTATACATGATT

mRNA sequence

GGATAGGCCCAAAATGTGAAAAACTGAAGTAAAATCCAGGGAGAAAAAGGACCCAAAGTTCCCTAATTTTCACAAACAACCAAACATTAACAATGGCATCATCCAAAAAATCAAGTACCGAAGCGAAGGGCAAAGAAGCGGGAACCTCAAAGCCAGCCCCCAAAGCCAAGACCCACAACAATGCCAAAAATTCCGACAAGGAAATCTCAAAGAAGAAGAAGAAGAAGAAGAAGATTAGCATTAGCACCAACAATGGCTCCGTCAAGGACAATGAGTCCTTAGCTGTTTCTCCTCCAGGAGGCTCAGCCTCTGAGGACGACGATGCCGCCGATGAAGACAAAGCCGAAACCACAAGTAGAAAACATAAGACCTCCAAATCGAAGAAAGTTAAACGGAACCATGCCAAGGAAGAAGATAATGGTTATGCCGAAGAAGAAGAAGAAGAAGCCGAGGAGAAGATTTATAAATTCCCTATGCATCGGATCAAGAAAATCATGAGGGATGAAAATTCTGATTTGCGTATTAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCTTCGGAGATGTTTCTTGTACAATTTTGCAAAGATGCATATGCATGCTGTGCTCAGGATCGCAAAAAGTCTCTTGCTTACAAGCATCTATCATCAGTAGTTTCCAAAAGGAAGAGATACGACTTTCTTTCAGATTTTGTTCCAGAGAAGTTAAAATTCGAAGACGCCTTAAAGGAAAGAAGCATGGCAGAATCAGGAAAGGACTAAGCTTCTCGATATTTTATTTTGAACACTTCATCTTGTTCTATGGATGTGTTATATATTTAGGTATCGTTCTTGTCATGTATTGAATCCTAGGAAGTTAGATACAACATACAACATACATTTTTTTTTAAACTACGTACCTGTAACATTTTTATCGAGATCTTAAATCTAATCTAACATTCATTCTAACACGATTATTCTTCTATGCATTTATTGAACTAAAAGTACTCTTTCTCTCTCTCTATACATGATT

Coding sequence (CDS)

ATGGCATCATCCAAAAAATCAAGTACCGAAGCGAAGGGCAAAGAAGCGGGAACCTCAAAGCCAGCCCCCAAAGCCAAGACCCACAACAATGCCAAAAATTCCGACAAGGAAATCTCAAAGAAGAAGAAGAAGAAGAAGAAGATTAGCATTAGCACCAACAATGGCTCCGTCAAGGACAATGAGTCCTTAGCTGTTTCTCCTCCAGGAGGCTCAGCCTCTGAGGACGACGATGCCGCCGATGAAGACAAAGCCGAAACCACAAGTAGAAAACATAAGACCTCCAAATCGAAGAAAGTTAAACGGAACCATGCCAAGGAAGAAGATAATGGTTATGCCGAAGAAGAAGAAGAAGAAGCCGAGGAGAAGATTTATAAATTCCCTATGCATCGGATCAAGAAAATCATGAGGGATGAAAATTCTGATTTGCGTATTAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCTTCGGAGATGTTTCTTGTACAATTTTGCAAAGATGCATATGCATGCTGTGCTCAGGATCGCAAAAAGTCTCTTGCTTACAAGCATCTATCATCAGTAGTTTCCAAAAGGAAGAGATACGACTTTCTTTCAGATTTTGTTCCAGAGAAGTTAAAATTCGAAGACGCCTTAAAGGAAAGAAGCATGGCAGAATCAGGAAAGGACTAA

Protein sequence

MASSKKSSTEAKGKEAGTSKPAPKAKTHNNAKNSDKEISKKKKKKKKISISTNNGSVKDNESLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD

Homology

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BLAST of Cmc11g0305941 vs. NCBI nr
Match: XP_008463933.1 (PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo])

HSP 1 Score: 396.7 bits (1018), Expect = 1.3e-106
Identity = 220/222 (99.10%), Postives = 221/222 (99.55%), Query Frame = 0


Query: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNAKNSDKEISKKKKKKKKISISTNNGSVKDN 60
           MASSKKSSTEAKGKEAGTSKPAPKAKTHNNA+NSDKEISKKKKKKKKISISTNNGSVKDN
Sbjct: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDN 60

Query: 61  ESLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE 120
           E LAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE
Sbjct: 61  EVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE 120

Query: 121 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 180
           EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA
Sbjct: 121 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 180

Query: 181 YKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 223
           YKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 181 YKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

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BLAST of Cmc11g0305941 vs. NCBI nr
Match: XP_004149539.2 (chromatin accessibility complex protein 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 357.8 bits (917), Expect = 6.6e-95
Identity = 206/224 (91.96%), Postives = 210/224 (93.75%), Query Frame = 0


Query: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNAKNSDKEISKKKKKKKK--ISISTNNGSVK 60
           MASSKKSSTEAK KE GTSKP+PKAKTHNNA+NSDK+ISKKKKKKKK  ISISTNNGSVK
Sbjct: 1   MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVK 60

Query: 61  DNESLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEE 120
           DN +LAVS PG SASED DAADEDKAETTSRK  TSKSKKVKRNHAKEEDN YA   EEE
Sbjct: 61  DNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKKVKRNHAKEEDNRYA--AEEE 120

Query: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180
           AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS
Sbjct: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180

Query: 181 LAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 223
           LAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 181 LAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

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BLAST of Cmc11g0305941 vs. NCBI nr
Match: XP_038902902.1 (DNA polymerase epsilon subunit C [Benincasa hispida])

HSP 1 Score: 333.6 bits (854), Expect = 1.3e-87
Identity = 189/222 (85.14%), Postives = 202/222 (90.99%), Query Frame = 0


Query: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNAKNSDKEISKKKKKKKKISISTNNGSVKDN 60
           MASSKKSSTEAK KEAGTSKP PK KTHNNA+ SDK+ S KKKKKKK  IST NGSVKDN
Sbjct: 44  MASSKKSSTEAKSKEAGTSKPTPKTKTHNNARKSDKDDSNKKKKKKK-KISTINGSVKDN 103

Query: 61  ESLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE 120
           E+LA SPPG +++ ++  ADED+AETTS K  TSKSKKV+RNH K+E+NGYA EEEEEAE
Sbjct: 104 EALATSPPGSASASEEVDADEDRAETTSGKPNTSKSKKVQRNHVKKEENGYAAEEEEEAE 163

Query: 121 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 180
           EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA
Sbjct: 164 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 223

Query: 181 YKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 223
           YKHLSSVV KRKRYDFLSDFVPEKLKFEDALKER+MAESGKD
Sbjct: 224 YKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERNMAESGKD 264

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BLAST of Cmc11g0305941 vs. NCBI nr
Match: KAA0035335.1 (DNA polymerase epsilon subunit C [Cucumis melo var. makuwa] >TYK14302.1 DNA polymerase epsilon subunit C [Cucumis melo var. makuwa])

HSP 1 Score: 327.8 bits (839), Expect = 7.3e-86
Identity = 183/187 (97.86%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNAKNSDKEISKKKKKKKKISISTNNGSVKDN 60
           MASSKKSSTEAKGKEAGTSKPAPKAKTHNNA+NSDKEISKKKKKKKKISISTNNGSVKDN
Sbjct: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDN 60

Query: 61  ESLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE 120
           E LAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE
Sbjct: 61  EVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE 120

Query: 121 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 180
           EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA
Sbjct: 121 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 180

Query: 181 YKHLSSV 188
           YKHL +V
Sbjct: 181 YKHLCNV 187

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BLAST of Cmc11g0305941 vs. NCBI nr
Match: XP_022986059.1 (DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 295.8 bits (756), Expect = 3.1e-76
Identity = 178/236 (75.42%), Postives = 191/236 (80.93%), Query Frame = 0


Query: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNAKNS-------DKEISKKKKKKKKISISTN 60
           MASSKKSS+EAK KEAGTSKPAPK KTHNN  N+       DK  SKKKK     +  T+
Sbjct: 1   MASSKKSSSEAKSKEAGTSKPAPKNKTHNNNNNNNNNARKVDKVYSKKKKVSSNNNKHTS 60

Query: 61  NGSVKDNESLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAE 120
           NGSVK+NE L +S PG         A+ED+ ETTS+   TSKSKKVKRNH K+E+NGYAE
Sbjct: 61  NGSVKENEVLPISAPGD--------AEEDRVETTSKSPNTSKSKKVKRNHGKKEENGYAE 120

Query: 121 EE-------EEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKD 180
           EE       EEEAEEKIYKFPM+RIKKIMRDENSDLRINQEALFLVNKA+EMFLVQFCKD
Sbjct: 121 EEEEEEEEAEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKD 180

Query: 181 AYACCAQDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 223
           AYACCAQDRKKSLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 181 AYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 228

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BLAST of Cmc11g0305941 vs. ExPASy Swiss-Prot
Match: Q9NRG0 (Chromatin accessibility complex protein 1 OS=Homo sapiens OX=9606 GN=CHRAC1 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.8e-06
Identity = 33/107 (30.84%), Postives = 57/107 (53.27%), Query Frame = 0


Query: 115 EEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQD 174
           +++  E+++   P+ RI+ IM+       INQEAL L  KA+E+F+      +Y   +  
Sbjct: 8   KDKGGEQRLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGK 67

Query: 175 RKKSLAYKHLSSVVSKRKRYDFLSDFVPEKL---KFEDALKERSMAE 219
            KK L Y  L++   + + + FL+D +P+K+   K+   LKE    E
Sbjct: 68  EKKVLTYSDLANTAQQSETFQFLADILPKKILASKYLKMLKEEKREE 114

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BLAST of Cmc11g0305941 vs. ExPASy Swiss-Prot
Match: Q9JKP8 (Chromatin accessibility complex protein 1 OS=Mus musculus OX=10090 GN=Chrac1 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.0e-05
Identity = 34/111 (30.63%), Postives = 58/111 (52.25%), Query Frame = 0


Query: 115 EEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQD 174
           +E+  ++++   P+ RI+ IM+       INQEAL L  KA+E+F+      +Y   +  
Sbjct: 8   KEKCGDQRLVSLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQYLATCSYRHGSGK 67

Query: 175 RKKSLAYKHLSSVVSKRKRYDFLSDFVPEKL---KFEDALKERSMAESGKD 223
            KK+L Y  L+S     +   FL+D +P+K+   K+   LKE+   E   +
Sbjct: 68  AKKALTYSDLASTAEDSETLQFLADILPKKILASKYLKMLKEKREEEEDNE 118

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BLAST of Cmc11g0305941 vs. ExPASy Swiss-Prot
Match: Q9V452 (Chromatin accessibility complex 16kD protein OS=Drosophila melanogaster OX=7227 GN=Chrac-16 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.0e-05
Identity = 34/100 (34.00%), Postives = 53/100 (53.00%), Query Frame = 0


Query: 127 PMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYA-CCAQDRKKSLAYKHLS 186
           P+ R++ IM+       I  E LFL+ K +E+F+      AY     Q   ++L Y+HLS
Sbjct: 21  PLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLS 80

Query: 187 SVVSKRKRYDFLSDFVPEKLK---FEDALKERSMAESGKD 223
            VV+K K  +FL   VP+K++   F++ L+    A S  D
Sbjct: 81  QVVNKNKNLEFLLQIVPQKIRVHQFQEMLRLNRSAGSDDD 120

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BLAST of Cmc11g0305941 vs. ExPASy Swiss-Prot
Match: P79007 (Transcriptional activator hap5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=hap5 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.9e-04
Identity = 28/89 (31.46%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 115 EEEEAEEKIYKFPMHRIKKIMR--DENSDLRINQEALFLVNKASEMFLVQFCKDAYACCA 174
           E ++   K    P+ RIKK+M+  D+  +  I+ EA FL  K SE+F+ +    A+    
Sbjct: 98  EHDDQAVKTLHLPLARIKKVMKTDDDVKNKMISAEAPFLFAKGSEIFIAELTMRAWLHAK 157

Query: 175 QDRKKSLAYKHLSSVVSKRKRYDFLSDFV 202
           ++++++L    +++ VSK + YDFL D +
Sbjct: 158 KNQRRTLQRSDIANAVSKSEMYDFLIDII 186

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BLAST of Cmc11g0305941 vs. ExPASy Swiss-Prot
Match: Q8LCG7 (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana OX=3702 GN=NFYC2 PE=1 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 2.5e-04
Identity = 30/104 (28.85%), Postives = 56/104 (53.85%), Query Frame = 0


Query: 113 EEEEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCA 172
           +E E   + K +  P+ RIKKIM+ +     I+ EA  +  KA EMF+++    A+    
Sbjct: 64  QEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTE 123

Query: 173 QDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSM 217
           ++++++L    +++ +S+   +DFL D +P      D LKE  +
Sbjct: 124 ENKRRTLQKNDIAAAISRTDVFDFLVDIIP-----RDELKEEGL 162

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BLAST of Cmc11g0305941 vs. ExPASy TrEMBL
Match: A0A1S3CKU7 (DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 6.2e-107
Identity = 220/222 (99.10%), Postives = 221/222 (99.55%), Query Frame = 0


Query: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNAKNSDKEISKKKKKKKKISISTNNGSVKDN 60
           MASSKKSSTEAKGKEAGTSKPAPKAKTHNNA+NSDKEISKKKKKKKKISISTNNGSVKDN
Sbjct: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDN 60

Query: 61  ESLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE 120
           E LAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE
Sbjct: 61  EVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE 120

Query: 121 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 180
           EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA
Sbjct: 121 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 180

Query: 181 YKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 223
           YKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 181 YKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

[Close]

BLAST of Cmc11g0305941 vs. ExPASy TrEMBL
Match: A0A0A0KCQ2 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G294440 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 3.2e-95
Identity = 206/224 (91.96%), Postives = 210/224 (93.75%), Query Frame = 0


Query: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNAKNSDKEISKKKKKKKK--ISISTNNGSVK 60
           MASSKKSSTEAK KE GTSKP+PKAKTHNNA+NSDK+ISKKKKKKKK  ISISTNNGSVK
Sbjct: 1   MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVK 60

Query: 61  DNESLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEE 120
           DN +LAVS PG SASED DAADEDKAETTSRK  TSKSKKVKRNHAKEEDN YA   EEE
Sbjct: 61  DNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKKVKRNHAKEEDNRYA--AEEE 120

Query: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180
           AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS
Sbjct: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180

Query: 181 LAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 223
           LAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 181 LAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

[Close]

BLAST of Cmc11g0305941 vs. ExPASy TrEMBL
Match: A0A5A7T1L3 (DNA polymerase epsilon subunit C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00250 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 3.5e-86
Identity = 183/187 (97.86%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNAKNSDKEISKKKKKKKKISISTNNGSVKDN 60
           MASSKKSSTEAKGKEAGTSKPAPKAKTHNNA+NSDKEISKKKKKKKKISISTNNGSVKDN
Sbjct: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDN 60

Query: 61  ESLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE 120
           E LAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE
Sbjct: 61  EVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE 120

Query: 121 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 180
           EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA
Sbjct: 121 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 180

Query: 181 YKHLSSV 188
           YKHL +V
Sbjct: 181 YKHLCNV 187

[Close]

BLAST of Cmc11g0305941 vs. ExPASy TrEMBL
Match: A0A6J1JF10 (DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483919 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.5e-76
Identity = 178/236 (75.42%), Postives = 191/236 (80.93%), Query Frame = 0


Query: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNAKNS-------DKEISKKKKKKKKISISTN 60
           MASSKKSS+EAK KEAGTSKPAPK KTHNN  N+       DK  SKKKK     +  T+
Sbjct: 1   MASSKKSSSEAKSKEAGTSKPAPKNKTHNNNNNNNNNARKVDKVYSKKKKVSSNNNKHTS 60

Query: 61  NGSVKDNESLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAE 120
           NGSVK+NE L +S PG         A+ED+ ETTS+   TSKSKKVKRNH K+E+NGYAE
Sbjct: 61  NGSVKENEVLPISAPGD--------AEEDRVETTSKSPNTSKSKKVKRNHGKKEENGYAE 120

Query: 121 EE-------EEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKD 180
           EE       EEEAEEKIYKFPM+RIKKIMRDENSDLRINQEALFLVNKA+EMFLVQFCKD
Sbjct: 121 EEEEEEEEAEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKD 180

Query: 181 AYACCAQDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 223
           AYACCAQDRKKSLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 181 AYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 228

[Close]

BLAST of Cmc11g0305941 vs. ExPASy TrEMBL
Match: A0A6J1CGZ0 (DNA polymerase epsilon subunit C OS=Momordica charantia OX=3673 GN=LOC111011331 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.7e-75
Identity = 176/231 (76.19%), Postives = 190/231 (82.25%), Query Frame = 0


Query: 1   MASSKKSSTEAKGKEAGTSKPA------PKAKTHNNAKNSDKEISKKKKKKKKISIS--T 60
           MASSKKSSTEAK KEAGTSK A       K KT +NA  SDK++SKK   KKKIS     
Sbjct: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60

Query: 61  NNGSVKDNESLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYA 120
           NNGS ++N+   +S P  ++ EDD  ADED+ ETTSRK  +SKSKKVKRNH K+E+NGY 
Sbjct: 61  NNGSAEENDVFEISAPDSASREDD--ADEDRTETTSRKANSSKSKKVKRNHGKKEENGYE 120

Query: 121 EEEEEE--AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYAC 180
           EEEEEE   EEKIYKFPMHRIKKI RDENSDLRINQEALFLVNKA+EMFLVQFCKDAYAC
Sbjct: 121 EEEEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYAC 180

Query: 181 CAQDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 222
           CAQDRKKSLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALKERSMAESGK
Sbjct: 181 CAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 229

[Close]

BLAST of Cmc11g0305941 vs. TAIR 10
Match: AT1G07980.1 (nuclear factor Y, subunit C10 )

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-19
Identity = 86/226 (38.05%), Postives = 132/226 (58.41%), Query Frame = 0


Query: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNA---KNSDK-EISKKKKKKKKISISTNNGS 60
           M SSKK   +    +   +K + ++K  + +   K S+K  I KKK +  +IS S+++ S
Sbjct: 1   MVSSKKPKEKKARSDVVVNKASGRSKRSSGSRTKKTSNKVNIVKKKPEIYEISESSSSDS 60

Query: 61  VKDNESLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEE 120
           V++             +   D A +     + R +  S     K +  +EED+G AE+ +
Sbjct: 61  VEE-------------AIRGDEAKKSNGVVSKRGNGKSVGIPTKTSKNREEDDGGAEDAK 120

Query: 121 EEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRK 180
                   KFPM+RI++IMR +NS  +I Q+A+FLVNKA+EMF+ +F ++AY    +D+K
Sbjct: 121 -------IKFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYDSSVKDKK 180

Query: 181 KSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALK--ERSMAESG 221
           K + YKHLSSVVS  +RY+FL+D VPEKLK E AL+  ER M ++G
Sbjct: 181 KFIHYKHLSSVVSNDQRYEFLADSVPEKLKAEAALEEWERGMTDAG 206

[Close]

BLAST of Cmc11g0305941 vs. TAIR 10
Match: AT1G56170.1 (nuclear factor Y, subunit C2 )

HSP 1 Score: 47.4 bits (111), Expect = 1.8e-05
Identity = 30/104 (28.85%), Postives = 56/104 (53.85%), Query Frame = 0


Query: 113 EEEEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCA 172
           +E E   + K +  P+ RIKKIM+ +     I+ EA  +  KA EMF+++    A+    
Sbjct: 64  QEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTE 123

Query: 173 QDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSM 217
           ++++++L    +++ +S+   +DFL D +P      D LKE  +
Sbjct: 124 ENKRRTLQKNDIAAAISRTDVFDFLVDIIP-----RDELKEEGL 162

[Close]

BLAST of Cmc11g0305941 vs. TAIR 10
Match: AT1G56170.2 (nuclear factor Y, subunit C2 )

HSP 1 Score: 47.4 bits (111), Expect = 1.8e-05
Identity = 30/104 (28.85%), Postives = 56/104 (53.85%), Query Frame = 0


Query: 113 EEEEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCA 172
           +E E   + K +  P+ RIKKIM+ +     I+ EA  +  KA EMF+++    A+    
Sbjct: 64  QEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTE 123

Query: 173 QDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSM 217
           ++++++L    +++ +S+   +DFL D +P      D LKE  +
Sbjct: 124 ENKRRTLQKNDIAAAISRTDVFDFLVDIIP-----RDELKEEGL 162

The following BLAST results are available for this feature:

BLAST of Cmc11g0305941 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463933.1	1.3e-106	99.10	PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo]	[more]
XP_004149539.2	6.6e-95	91.96	chromatin accessibility complex protein 1 isoform X1 [Cucumis sativus]	[more]
XP_038902902.1	1.3e-87	85.14	DNA polymerase epsilon subunit C [Benincasa hispida]	[more]
KAA0035335.1	7.3e-86	97.86	DNA polymerase epsilon subunit C [Cucumis melo var. makuwa] >TYK14302.1 DNA poly...	[more]
XP_022986059.1	3.1e-76	75.42	DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Cmc11g0305941 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9NRG0	7.8e-06	30.84	Chromatin accessibility complex protein 1 OS=Homo sapiens OX=9606 GN=CHRAC1 PE=1...	[more]
Q9JKP8	1.0e-05	30.63	Chromatin accessibility complex protein 1 OS=Mus musculus OX=10090 GN=Chrac1 PE=...	[more]
Q9V452	1.0e-05	34.00	Chromatin accessibility complex 16kD protein OS=Drosophila melanogaster OX=7227 ...	[more]
P79007	1.9e-04	31.46	Transcriptional activator hap5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]
Q8LCG7	2.5e-04	28.85	Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of Cmc11g0305941 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CKU7	6.2e-107	99.10	DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV...	[more]
A0A0A0KCQ2	3.2e-95	91.96	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G2944...	[more]
A0A5A7T1L3	3.5e-86	97.86	DNA polymerase epsilon subunit C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A6J1JF10	1.5e-76	75.42	DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1CGZ0	3.7e-75	76.19	DNA polymerase epsilon subunit C OS=Momordica charantia OX=3673 GN=LOC111011331 ...	[more]

BLAST of Cmc11g0305941 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07980.1	1.3e-19	38.05	nuclear factor Y, subunit C10	[more]
AT1G56170.1	1.8e-05	28.85	nuclear factor Y, subunit C2	[more]
AT1G56170.2	1.8e-05	28.85	nuclear factor Y, subunit C2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 102..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..119
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 22..219
None	No IPR available	PANTHER	PTHR10252:SF93	HISTONE-LIKE TRANSCRIPTION FACTOR AND ARCHAEAL HISTONE FAMILY PROTEIN, EXPRESSED	coord: 22..219
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 80..203 e-value: 6.4E-25 score: 89.7
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 91..197
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 125..188 e-value: 2.4E-16 score: 59.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0305941.1	Cmc11g0305941.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046982	protein heterodimerization activity