Cmc11g0305681 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0305681
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr11: 27030441 .. 27031912 (+)
RNA-Seq Expression	Cmc11g0305681
Synteny	Cmc11g0305681

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTAAGAATACAGATAAGAGATTCATCATACTCTCCAGTCTCCCAAGAGCAAACTTTTGAGTTTAGAAATAATTTAACATACTTTGGTAGTCACTTCTAGAATCTCTTTCTAATATTAGCTCTTAGGATTTGGCATACTTTGATATGGAGCATGTGATTGTCAGTGTATATACTTTGAGGATCTTTTACATTCAACGTTGTTTAGTTGTGTAATTGTAGTTATTCCAGAAAGAAATATCTTTTTGAGCTATCCCTTACCCCCAAGCATTCAAGTTCGAAGTAATTGGAACTATCCCTTACTCTATCATCTTCAAAACCCATCAAAAACTAGATCTGTTGTATAGCCCTAGATAGTTGTTTCTCGATGTACATGAAGAACAATCAGAAATTATCCACACACACACACACACACACACACACACACACACACACAAAAAAAAAAAAAAAAAGAAGAACAGATAAAAGACCCTAAATTATATCTTACTTGGTCTATTTCACACTTCTGCAGGATTTTCACGGCACTGTTCTGGACTCCATCTCGTAACTGTGCGTTCTTCAATGGAGTAACTGTCCAAACACGAAGGAGAAACAAATTCACTTCCATTATCATTGACGGAAAGAACTAGCAACGTTTTAGCAACACTTCCACAAAGCCGAATTGTGCAAAGAAAATCAGACCAAACCCTCAATCGCCCATTTCCATTACTGTCTCTTCCTTCAGACAACACCAGAACAGCAAATTCAGAGTGAACAAGAGCCGGATGATGACGATACGCCACAAAATCAACCCCATATTGAGATCCAGGTCTAACAACCCAATTCTTCAATCGAAGATGTCGGTAAGCAATGTAAAACTCAGGGAATGTAGCCTTTTGGGTCTTCATATACCGCCAAAGCTCTTGAAAATTCATTTCACAGTCTTGTCCATCGACAATTTTGAGGCAATTCAAGTGATAGGACAAGTAAAAAGCCTCCTCCATGCCAAATTGAAACCATTGTTTGTCCTTCTCAGCAGTAAGAATTTGTCGGCCGAAACAAGTGCGATTAAGAAGATCGGTTTGTTCTTCGTCGGCTAGATAAAGTATGGTAGAACCAGATAATAATCCTCGAGCGTTGGACTGTATGAAAGAAGATTGAAGGTGAAGTACAGTACTGGAGATGGGATCAGCTAGAGCTTTGGCTTCTGAAGCCTTCCCTTTCCATCTCGGCGCCATTGAAGCCGGAGGTGAAACAGTGAAATCGACGGCAACAACGCGAGATAAAAGAGAAAAAGAAGAGTGCGGCGGCGGGGAGAGTAAGTTAAAAGAAAAAGGAAAGTAGTTGGAGATCATAGATTAGATAAAATTAAAAGAATAAAGATATTATTTGTAACATTGGAGAGTGGTGGTTGAACCTCCCAACCTCTAACTACATACTTACAATTTCTAACAAAAATTAAGGATACAAATGTGTGGCAATAATCTAAAATGAT

mRNA sequence

TGTTAAGAATACAGATAAGAGATTCATCATACTCTCCAGTCTCCCAAGAGCAAACTTTTGAGTTTAGAAATAATTTAACATACTTTGGTAGTCACTTCTAGAATCTCTTTCTAATATTAGCTCTTAGGATTTGGCATACTTTGATATGGAGCATGTGATTGTCAGTGTATATACTTTGAGGATCTTTTACATTCAACGTTGTTTAGTTGTGTAATTGTAGTTATTCCAGAAAGAAATATCTTTTTGAGCTATCCCTTACCCCCAAGCATTCAAGTTCGAAGTAATTGGAACTATCCCTTACTCTATCATCTTCAAAACCCATCAAAAACTAGATCTGTTGTATAGCCCTAGATAGTTGTTTCTCGATGTACATGAAGAACAATCAGAAATTATCCACACACACACACACACACACACACACACACACACACACAAAAAAAAAAAAAAAAAGAAGAACAGATAAAAGACCCTAAATTATATCTTACTTGGTCTATTTCACACTTCTGCAGGATTTTCACGGCACTGTTCTGGACTCCATCTCGTAACTGTGCGTTCTTCAATGGAGTAACTGTCCAAACACGAAGGAGAAACAAATTCACTTCCATTATCATTGACGGAAAGAACTAGCAACGTTTTAGCAACACTTCCACAAAGCCGAATTGTGCAAAGAAAATCAGACCAAACCCTCAATCGCCCATTTCCATTACTGTCTCTTCCTTCAGACAACACCAGAACAGCAAATTCAGAGTGAACAAGAGCCGGATGATGACGATACGCCACAAAATCAACCCCATATTGAGATCCAGGTCTAACAACCCAATTCTTCAATCGAAGATGTCGGTAAGCAATGTAAAACTCAGGGAATGTAGCCTTTTGGGTCTTCATATACCGCCAAAGCTCTTGAAAATTCATTTCACAGTCTTGTCCATCGACAATTTTGAGGCAATTCAAGTGATAGGACAAGTAAAAAGCCTCCTCCATGCCAAATTGAAACCATTGTTTGTCCTTCTCAGCAGTAAGAATTTGTCGGCCGAAACAAGTGCGATTAAGAAGATCGGTTTGTTCTTCGTCGGCTAGATAAAGTATGGTAGAACCAGATAATAATCCTCGAGCGTTGGACTGTATGAAAGAAGATTGAAGGTGAAGTACAGTACTGGAGATGGGATCAGCTAGAGCTTTGGCTTCTGAAGCCTTCCCTTTCCATCTCGGCGCCATTGAAGCCGGAGGTGAAACAGTGAAATCGACGGCAACAACGCGAGATAAAAGAGAAAAAGAAGAGTGCGGCGGCGGGGAGAGTAAGTTAAAAGAAAAAGGAAAGTAGTTGGAGATCATAGATTAGATAAAATTAAAAGAATAAAGATATTATTTGTAACATTGGAGAGTGGTGGTTGAACCTCCCAACCTCTAACTACATACTTACAATTTCTAACAAAAATTAAGGATACAAATGTGTGGCAATAATCTAAAATGAT

Coding sequence (CDS)

ATGATGACGATACGCCACAAAATCAACCCCATATTGAGATCCAGGTCTAACAACCCAATTCTTCAATCGAAGATGTCGGTAAGCAATGTAAAACTCAGGGAATGTAGCCTTTTGGGTCTTCATATACCGCCAAAGCTCTTGAAAATTCATTTCACAGTCTTGTCCATCGACAATTTTGAGGCAATTCAAGTGATAGGACAAGTAAAAAGCCTCCTCCATGCCAAATTGAAACCATTGTTTGTCCTTCTCAGCAGTAAGAATTTGTCGGCCGAAACAAGTGCGATTAAGAAGATCGGTTTGTTCTTCGTCGGCTAG

Protein sequence

MMTIRHKINPILRSRSNNPILQSKMSVSNVKLRECSLLGLHIPPKLLKIHFTVLSIDNFEAIQVIGQVKSLLHAKLKPLFVLLSSKNLSAETSAIKKIGLFFVG

Homology

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BLAST of Cmc11g0305681 vs. ExPASy TrEMBL
Match: A0A2P2IH09 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.6e-10
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 0


Query: 1   MMTIRHKINPILRSRSNNPILQSKMSVSNVKLRECSLLGLHIPPKLLKIHFTVLSIDNFE 60
           ++++ +K++ ILRS  ++P+  SKMS+   K R+  LLG H+ P+L  I++ ++S  NFE
Sbjct: 55  VVSVGNKVHTILRSGPHDPVFHSKMSICLAKFRKIWLLGFHVQPQLQTINYRIISSSNFE 114

Query: 61  AIQVIGQVKSLLHAKLKP-LFVLLSSKNLSAET 93
           A Q I QVK  LH + +P L +LLSS +   ET
Sbjct: 115 ASQRIAQVKGFLHTQFEPLLIILLSSDHRPPET 147

The following BLAST results are available for this feature:

BLAST of Cmc11g0305681 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc11g0305681 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc11g0305681 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P2IH09	5.6e-10	41.94	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

BLAST of Cmc11g0305681 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0305681.1	Cmc11g0305681.1	mRNA