Cmc11g0305671 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0305671
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	tRNA-intron lyase
Location	CMiso1.1chr11: 27028813 .. 27031833 (-)
RNA-Seq Expression	Cmc11g0305671
Synteny	Cmc11g0305671

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAACCACCACTCTCCAATGTTACAAATAATATCTTTATTCTTTTAATTTTATCTAATCTATGATCTCCAACTACTTTCCTTTTTCTTTTAACTTACTCTCCCCGCCGCCGCACTCTTCTTTTTCTCTTTTATCTCGCGTTGTTGCCGTCGATTTCACTGTTTCACCTCCGGCTTCAATGGCGCCGAGATGGAAAGGGAAGGCTTCAGAAGCCAAAGCTCTAGCTGATCCCATCTCCAGTACTGTACTTCACCTTCAATCTTCTTTCATACAGTCCAACGCTCGAGGATTATTATCTGGTTCTACCATACTTTATCTAGCCGACGAAGAACAAACCGATCTTCTTAATCGCACTTGTTTCGGCCGACAAATTCTTACTGCTGAGAAGGACAAACAATGGTTTCAATTTGGCATGGAGGAGGCTTTTTACTTGTCCTATCACTTGAATTGCCTCAAAATTGTCGATGGACAAGACTGTGAAATGAATTTTCAAGAGCTTTGGCGGTATATGAAGACCCAAAAGGCTACATTCCCTGAGTTTTACATTGCTTACCGACATCTTCGATTGAAGAATTGGGTTGTTAGACCTGGATCTCAATATGGGGTTGATTTTGTGGCGTATCGTCATCATCCGGCTCTTGTTCACTCTGAATTTGCTGTTCTGGTGTTGTCTGAAGGAAGAGACAGTAATGGAAATGGGCGATTGAGGGTTTGGTCTGATTTTCTTTGCACAATTCGGCTTTGTGGAAGTGTTGCTAAAACGTTGCTAGTTCTTTCCGTCAATGATAATGGAAGTGAATTTGTTTCTCCTTCGTGTTTGGACAGTTACTCCATTGAAGAACGCACAGTTACGAGATGGAGTCCAGAACAGTGCCGTGAAAATCCTGCAGAAGTGTGAAATAGACCAAGTAAGATATAATTTAGGGTCTTTTATCTGTTCTTCTTTTTTTTTTTTTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGATAATTTCTGATTGTTCTTCATGTACATCGAGAAACAACTATCTAGGGCTATACAACAGATCTAGTTTTTGATGGGTTTTGAAGATGATAGAGTAAGGGATAGTTCCAATTACTTCGAACTTGAATGCTTGGGGGTAAGGGATAGCTCAAAAAGATATTTCTTTCTGGAATAACTACAATTACACAACTAAACAACGTTGAATGTAAAAGATCCTCAAAGTATATACACTGACAATCACATGCTCCATATCAAAGTATGCCAAATCCTAAGAGCTAATATTAGAAAGAGATTCTAGAAGTGACTACCAAAGTATGTTAAATTATTTCTAAACTCAAAAGTTTGCTCTTGGGAGACTGGAGAGTATGATGAATCTCTTATCTGTATTCTTAACATTTGAGTAACTATGTAGCTGGGTTGTGAATTCGCCATCTGCACTTTTCTCTTGGAGAATTCATCATTATTGATTGCTAGGTTTTCCTTGATGCTCCAATTGCAAACAACAAAATGATGAAGACGATGTTATTTGTTAGAGACATCTTCCTCCATTGTTGCCATAACAGAGTCCCTCCTGAAAATTGTATCATTTGGCAGATCGGCTACTGCCAGTTTAAAATGTCTCATTATATAGACATAACATCTCTCACCTCTTGATGGAATCTACTGTCAAAGACAAGGATACATTTAGCAGTAATTTTAAAAAGTAAAAATCTGCTTGATCCCCAATTCTGAAAATAGTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGCTTTGTTAGGGGTTTAGTAGGGTTTTGGGGATTGGTGTGGAGGTAGGGAGTTTTTGGTAGTGAGAGAATTCACCAAAGGTGAGATTTGGATCTCTCGAACTGTCGGGGTTGTGTTTTGTTCTTTGCAATTTGTGGTCTTGTTCTTAGACTTGATTATCGTTGTAACCTTACTGAACTTTGCTGGTATCTTTGATTATATATGTTGTACAAAGGGGATTTGCGTCTGTTTCTCAGATTGTTAGGTCTTTCTGTGTGCATGAATCTTTAAGTTTTTGATATTTAAAATAACTCTGAGACGTGTCTTAAATCAAAATCATTTCGTACAATAAAAGTACAAAATTGATTTCAACAATTTTAAAAATCACTACTTAACATGTCTTAAACAAACCAGATCGAAAATATTAGATAACAGAGCCAAATTCTTTACATCAATCTGGCTATTACTCTAACGTACTTTCAAAAGAATGTGACTTGCAACTGTTACTTTCTCTTTTGCTTAGGAGCATACATTAATTGACTGACGGGAAAGGTATTGTGTAGAAAGGTGGATGTACTTGAAAGAATTGTAGCTTTGCTAGTTGATAATCTTTTGAAATAGGCCTCTCATTATTGCTAATGCTTTTTATGCAGCTTTTAAGGTATTCTCTTATGAAGATGAACTATGTGCGGAAAATGGAAACCAAGAATTTTGAAGATAATGTAAATGATGCAAGAAAAGGAGGCAGAGGTTTTAACATGTCAAACACTGCAACACGAGGAACTACTGAGAAATCATATCCGTTTCAATAGAGGTTACTACCATTATGTTATATTGCCATGGAAGGAAAACCGTGAGAATATGACTAGGAGGATGGTCTCCTCCATTGTTGTGTTGCTACAATCAAGACATTAGTGGTTTCAATCCTCCTAACTCAAAAGGAAGAAGATTGTTGTGTTATTCATGCTAACCAACAATATTTCTTGGCCACTCACGCTTCAATTTATCGGCTTTATTTATTAGGTGAGATGTCATTTTATCTTAAACATGAAAAGAATCTTATGAGTATGTGCATTAAAGATTTTGATAGAAGAGTAGAGAAATATGATTATGGTAGATTATTCACAACAATCAAAGAGCTTTCACATTATTTAACGGAATAATTATTGTAGGGTGATATATATAGTTGAAATCTTTCGAATTCCTTTCAGGATCACTATCATCACTAGTAAAATAAAACATTGTAATACTAATACCGATTTGTTAATTTGCTCTTAC

mRNA sequence

TTCAACCACCACTCTCCAATGTTACAAATAATATCTTTATTCTTTTAATTTTATCTAATCTATGATCTCCAACTACTTTCCTTTTTCTTTTAACTTACTCTCCCCGCCGCCGCACTCTTCTTTTTCTCTTTTATCTCGCGTTGTTGCCGTCGATTTCACTGTTTCACCTCCGGCTTCAATGGCGCCGAGATGGAAAGGGAAGGCTTCAGAAGCCAAAGCTCTAGCTGATCCCATCTCCAGTACTGTACTTCACCTTCAATCTTCTTTCATACAGTCCAACGCTCGAGGATTATTATCTGGTTCTACCATACTTTATCTAGCCGACGAAGAACAAACCGATCTTCTTAATCGCACTTGTTTCGGCCGACAAATTCTTACTGCTGAGAAGGACAAACAATGGTTTCAATTTGGCATGGAGGAGGCTTTTTACTTGTCCTATCACTTGAATTGCCTCAAAATTGTCGATGGACAAGACTGTGAAATGAATTTTCAAGAGCTTTGGCGGTATATGAAGACCCAAAAGGCTACATTCCCTGAGTTTTACATTGCTTACCGACATCTTCGATTGAAGAATTGGGTTGTTAGACCTGGATCTCAATATGGGGTTGATTTTGTGGCGTATCGTCATCATCCGGCTCTTGTTCACTCTGAATTTGCTGTTCTGGTGTTGTCTGAAGGAAGAGACAGTAATGGAAATGGGCGATTGAGGGTTTGTTACTCCATTGAAGAACGCACAGTTACGAGATGGAGTCCAGAACAGTGCCGTGAAAATCCTGCAGAAGTGTGAAATAGACCAACTTTTAAGGTATTCTCTTATGAAGATGAACTATGTGCGGAAAATGGAAACCAAGAATTTTGAAGATAATGTAAATGATGCAAGAAAAGGAGGCAGAGGTTTTAACATGTCAAACACTGCAACACGAGGAACTACTGAGAAATCATATCCGTTTCAATAGAGGTTACTACCATTATGTTATATTGCCATGGAAGGAAAACCGTGAGAATATGACTAGGAGGATGGTCTCCTCCATTGTTGTGTTGCTACAATCAAGACATTAGTGGTTTCAATCCTCCTAACTCAAAAGGAAGAAGATTGTTGTGTTATTCATGCTAACCAACAATATTTCTTGGCCACTCACGCTTCAATTTATCGGCTTTATTTATTAGGTGAGATGTCATTTTATCTTAAACATGAAAAGAATCTTATGAGTATGTGCATTAAAGATTTTGATAGAAGAGTAGAGAAATATGATTATGGTAGATTATTCACAACAATCAAAGAGCTTTCACATTATTTAACGGAATAATTATTGTAGGGTGATATATATAGTTGAAATCTTTCGAATTCCTTTCAGGATCACTATCATCACTAGTAAAATAAAACATTGTAATACTAATACCGATTTGTTAATTTGCTCTTAC

Coding sequence (CDS)

ATGATCTCCAACTACTTTCCTTTTTCTTTTAACTTACTCTCCCCGCCGCCGCACTCTTCTTTTTCTCTTTTATCTCGCGTTGTTGCCGTCGATTTCACTGTTTCACCTCCGGCTTCAATGGCGCCGAGATGGAAAGGGAAGGCTTCAGAAGCCAAAGCTCTAGCTGATCCCATCTCCAGTACTGTACTTCACCTTCAATCTTCTTTCATACAGTCCAACGCTCGAGGATTATTATCTGGTTCTACCATACTTTATCTAGCCGACGAAGAACAAACCGATCTTCTTAATCGCACTTGTTTCGGCCGACAAATTCTTACTGCTGAGAAGGACAAACAATGGTTTCAATTTGGCATGGAGGAGGCTTTTTACTTGTCCTATCACTTGAATTGCCTCAAAATTGTCGATGGACAAGACTGTGAAATGAATTTTCAAGAGCTTTGGCGGTATATGAAGACCCAAAAGGCTACATTCCCTGAGTTTTACATTGCTTACCGACATCTTCGATTGAAGAATTGGGTTGTTAGACCTGGATCTCAATATGGGGTTGATTTTGTGGCGTATCGTCATCATCCGGCTCTTGTTCACTCTGAATTTGCTGTTCTGGTGTTGTCTGAAGGAAGAGACAGTAATGGAAATGGGCGATTGAGGGTTTGTTACTCCATTGAAGAACGCACAGTTACGAGATGGAGTCCAGAACAGTGCCGTGAAAATCCTGCAGAAGTGTGA

Protein sequence

MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVCYSIEERTVTRWSPEQCRENPAEV

Homology

[Close]

BLAST of Cmc11g0305671 vs. NCBI nr
Match: XP_008463900.1 (PREDICTED: tRNA-splicing endonuclease subunit Sen2-1 isoform X2 [Cucumis melo])

HSP 1 Score: 497.3 bits (1279), Expect = 7.5e-137
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISS 60
           MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISS
Sbjct: 1   MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISS 60

Query: 61  TVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEE 120
           TVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEE
Sbjct: 61  TVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEE 120

Query: 121 AFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQY 180
           AFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQY
Sbjct: 121 AFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQY 180

Query: 181 GVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVCYSIEERTVTRWSPEQCRENPAE 240
           GVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVCYSIEERTVTRWSPEQCRENPAE
Sbjct: 181 GVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVCYSIEERTVTRWSPEQCRENPAE 240

Query: 241 V 242
           V
Sbjct: 241 V 241

[Close]

BLAST of Cmc11g0305671 vs. NCBI nr
Match: XP_008463899.1 (PREDICTED: tRNA-splicing endonuclease subunit Sen2-1 isoform X1 [Cucumis melo])

HSP 1 Score: 474.9 bits (1221), Expect = 4.0e-130
Identity = 240/278 (86.33%), Postives = 240/278 (86.33%), Query Frame = 0


Query: 1   MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISS 60
           MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISS
Sbjct: 1   MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISS 60

Query: 61  TVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEE 120
           TVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEE
Sbjct: 61  TVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEE 120

Query: 121 AFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQY 180
           AFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQY
Sbjct: 121 AFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQY 180

Query: 181 GVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRV----------------------- 240
           GVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRV                       
Sbjct: 181 GVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLSV 240

Query: 241 --------------CYSIEERTVTRWSPEQCRENPAEV 242
                          YSIEERTVTRWSPEQCRENPAEV
Sbjct: 241 NDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV 278

[Close]

BLAST of Cmc11g0305671 vs. NCBI nr
Match: XP_004149565.1 (tRNA-splicing endonuclease subunit Sen2-1 [Cucumis sativus] >KGN47294.1 hypothetical protein Csa_023042 [Cucumis sativus])

HSP 1 Score: 411.0 bits (1055), Expect = 7.1e-111
Identity = 210/271 (77.49%), Postives = 215/271 (79.34%), Query Frame = 0


Query: 8   FSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISSTVLHLQS 67
           F   L  P     F LLS V AVDFTVSPPASMAPRWKGKASEAKALADPIS+T+LHLQS
Sbjct: 11  FFIQLTLPAAAHFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTLLHLQS 70

Query: 68  SFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYH 127
           SFI SNA+GLLSGS ILYLADEEQTDLLNRTCFGR ILTAEKDKQWFQFGMEEAFYLSYH
Sbjct: 71  SFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYH 130

Query: 128 LNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAY 187
           LNCLKIVDGQDCE NFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAY
Sbjct: 131 LNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAY 190

Query: 188 RHHPALVHSEFAVLVLSEGRDSNGNGRLRV------------------------------ 242
           RHHP+LVHSEFAVLVL EGRDSNGNGRLRV                              
Sbjct: 191 RHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGF 250

[Close]

BLAST of Cmc11g0305671 vs. NCBI nr
Match: KAA0035302.1 (tRNA-splicing endonuclease subunit Sen2-1 isoform X1 [Cucumis melo var. makuwa] >TYK14334.1 tRNA-splicing endonuclease subunit Sen2-1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 400.2 bits (1027), Expect = 1.3e-107
Identity = 201/239 (84.10%), Postives = 201/239 (84.10%), Query Frame = 0


Query: 40  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTC 99
           MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTC
Sbjct: 1   MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTC 60

Query: 100 FGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPE 159
           FGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPE
Sbjct: 61  FGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPE 120

Query: 160 FYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRV-- 219
           FYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRV  
Sbjct: 121 FYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWS 180

Query: 220 -----------------------------------CYSIEERTVTRWSPEQCRENPAEV 242
                                               YSIEERTVTRWSPEQCRENPAEV
Sbjct: 181 DFLCTIRLCGSVAKTLLVLSVNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV 239

[Close]

BLAST of Cmc11g0305671 vs. NCBI nr
Match: XP_038900547.1 (tRNA-splicing endonuclease subunit Sen2-1 [Benincasa hispida] >XP_038900548.1 tRNA-splicing endonuclease subunit Sen2-1 [Benincasa hispida] >XP_038900549.1 tRNA-splicing endonuclease subunit Sen2-1 [Benincasa hispida] >XP_038900550.1 tRNA-splicing endonuclease subunit Sen2-1 [Benincasa hispida] >XP_038900551.1 tRNA-splicing endonuclease subunit Sen2-1 [Benincasa hispida])

HSP 1 Score: 347.4 bits (890), Expect = 9.7e-92
Identity = 175/239 (73.22%), Postives = 184/239 (76.99%), Query Frame = 0


Query: 40  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTC 99
           MAPRWKGK SEAKALADP+S+ VL LQSS  QSNA+GLLSGS +LY ADEEQTDLLNR C
Sbjct: 1   MAPRWKGKGSEAKALADPMSNIVLQLQSSLTQSNAQGLLSGSAVLYQADEEQTDLLNRAC 60

Query: 100 FGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPE 159
           FGR ILTAEKDKQWFQFGMEEAFYL YHLNCLKIVDGQDCE N QELW+ MK+QK TFPE
Sbjct: 61  FGRPILTAEKDKQWFQFGMEEAFYLLYHLNCLKIVDGQDCEKNVQELWQDMKSQKPTFPE 120

Query: 160 FYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRV-- 219
           FYIAY+HLRLKNWVVRPGSQYGVDFVAYRHHPALVHSE+AVLVLSEG  SN NGRLRV  
Sbjct: 121 FYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEYAVLVLSEGGGSNENGRLRVWS 180

Query: 220 -----------------------------------CYSIEERTVTRWSPEQCRENPAEV 242
                                               YSIEERTVTRWSPEQCRENPA+V
Sbjct: 181 DFLCTIRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV 239

[Close]

BLAST of Cmc11g0305671 vs. ExPASy Swiss-Prot
Match: Q9LSS3 (tRNA-splicing endonuclease subunit Sen2-2 OS=Arabidopsis thaliana OX=3702 GN=SEN2 PE=2 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.6e-52
Identity = 109/232 (46.98%), Postives = 142/232 (61.21%), Query Frame = 0


Query: 40  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTC 99
           MAPRWK K +EAKALA+PIS +V  LQ S  ++ + G LS   +L   + EQ +LL+R C
Sbjct: 1   MAPRWKWKGAEAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRCC 60

Query: 100 FGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPE 159
           FGR +L+AEK K+W Q   EEAF+L Y+L C+KI     C  N  + W YMK+++  FP 
Sbjct: 61  FGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLENEVDTWLYMKSKRPNFPM 120

Query: 160 FYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDS---------- 219
           F+ AY HLR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV S   D           
Sbjct: 121 FFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLVQSGDSDRLRVWSDIHCA 180

Query: 220 ----------------NGNGR-----LRVC---YSIEERTVTRWSPEQCREN 238
                           NGN +     L VC   +++EE+T++RWSPE  RE+
Sbjct: 181 VRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSRED 232

[Close]

BLAST of Cmc11g0305671 vs. ExPASy Swiss-Prot
Match: Q9M1E8 (tRNA-splicing endonuclease subunit Sen2-1 OS=Arabidopsis thaliana OX=3702 GN=SEN1 PE=2 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 5.0e-51
Identity = 112/238 (47.06%), Postives = 140/238 (58.82%), Query Frame = 0


Query: 40  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTC 99
           MAPRWK K +EAKALA+P+S TV  L+SS  Q+ A G LS   +L   + E+ +LL+R C
Sbjct: 1   MAPRWKWKGAEAKALAEPVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAELLDRCC 60

Query: 100 FGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQDCEMNFQELWRYMKTQKATFP 159
           FGR ++ AEKDK+W Q   EEAF+L Y L C+KI + G+  E N  +LWR M + K  F 
Sbjct: 61  FGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHGRSLE-NEVDLWRSMSSFKQDFA 120

Query: 160 EFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRV- 219
             Y AY HLR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV S G    GN RL+V 
Sbjct: 121 ILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLVQSIG----GNDRLKVW 180

Query: 220 -----------------------------------C---YSIEERTVTRWSPEQCREN 238
                                              C   Y++EE+T+ RWSPE  RE+
Sbjct: 181 SDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSRED 233

[Close]

BLAST of Cmc11g0305671 vs. ExPASy Swiss-Prot
Match: Q5Z6B1 (Probable tRNA-splicing endonuclease subunit Sen2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0530700 PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 5.1e-43
Identity = 105/245 (42.86%), Postives = 131/245 (53.47%), Query Frame = 0


Query: 42  PRWK----GKASEAKALADPISSTVLHLQSSFIQSNARGLLS---GSTILYLADEEQTDL 101
           PRWK    GK   + A A+P+S+ V  L++SFI S    +LS   GS +L +   EQ  +
Sbjct: 6   PRWKKGKDGKDFASLAAANPMSAIVSELKASFISSKPVAILSGPGGSAVLGVG-PEQAVI 65

Query: 102 LNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQK 161
           LNR  FG  I  A   K WFQ   EE FYL + LNC+++    + +M+  ELW Y ++  
Sbjct: 66  LNRAAFGHAIENATAQKHWFQLSPEEVFYLCHALNCIRVDSLDNKQMSEIELWDYFRSGS 125

Query: 162 ATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRD-SNGNG 221
            +FPE Y AY HLRLKNWVVR G QYG DFVAYRHHPALVHSEFAV+V+ EG +  N  G
Sbjct: 126 ESFPEMYKAYAHLRLKNWVVRSGLQYGADFVAYRHHPALVHSEFAVVVVPEGAEFGNRCG 185

Query: 222 RLRV-----------------------------------CYS---IEERTVTRWSPEQCR 241
           RL V                                   C     + ERT+TRW  +QCR
Sbjct: 186 RLEVWSDLLCALRASGSVAKTLLVLTISSSSKCELSSPDCLEQLVVHERTITRWILQQCR 245

[Close]

BLAST of Cmc11g0305671 vs. ExPASy Swiss-Prot
Match: Q5ZIN2 (tRNA-splicing endonuclease subunit Sen2 OS=Gallus gallus OX=9031 GN=TSEN2 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.4e-13
Identity = 37/105 (35.24%), Postives = 57/105 (54.29%), Query Frame = 0


Query: 112 QWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKN 171
           ++ Q  +EEAF+L Y L CL +  G++  +   +LW      K +F   Y+AY + R K 
Sbjct: 291 EYLQLSLEEAFFLVYALGCLTVYYGEE-PLTILKLWEIFSEVKPSFKTTYMAYHYFRSKG 350

Query: 172 WVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLR 217
           WV + G +YG D + YR  P   H+ ++  V++E  D N  G LR
Sbjct: 351 WVPKVGLKYGTDLLLYRKGPPFYHASYS--VIAELVDDNFEGSLR 392

[Close]

BLAST of Cmc11g0305671 vs. ExPASy Swiss-Prot
Match: Q6P7W5 (tRNA-splicing endonuclease subunit Sen2 OS=Mus musculus OX=10090 GN=Tsen2 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.4e-13
Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = 0


Query: 112 QWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKN 171
           ++ Q  +EEAF+L+Y L CL I   ++  +   +LW+     + TF   Y+AY + R K 
Sbjct: 290 EYLQLSLEEAFFLAYALGCLSIYYEKE-PLTIVKLWQAFTAVQPTFRTTYMAYHYFRSKG 349

Query: 172 WVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVCYS 221
           WV + G +YG D + YR  P   H+ ++V++  E  D N  G LR  +S
Sbjct: 350 WVPKVGLKYGTDLLLYRKGPPFYHASYSVII--ELLDDNYEGSLRRPFS 395

[Close]

BLAST of Cmc11g0305671 vs. ExPASy TrEMBL
Match: A0A1S3CKR5 (tRNA-intron lyase OS=Cucumis melo OX=3656 GN=LOC103501916 PE=3 SV=1)

HSP 1 Score: 497.3 bits (1279), Expect = 3.7e-137
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISS 60
           MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISS
Sbjct: 1   MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISS 60

Query: 61  TVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEE 120
           TVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEE
Sbjct: 61  TVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEE 120

Query: 121 AFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQY 180
           AFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQY
Sbjct: 121 AFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQY 180

Query: 181 GVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVCYSIEERTVTRWSPEQCRENPAE 240
           GVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVCYSIEERTVTRWSPEQCRENPAE
Sbjct: 181 GVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVCYSIEERTVTRWSPEQCRENPAE 240

Query: 241 V 242
           V
Sbjct: 241 V 241

[Close]

BLAST of Cmc11g0305671 vs. ExPASy TrEMBL
Match: A0A1S3CK86 (tRNA-intron lyase OS=Cucumis melo OX=3656 GN=LOC103501916 PE=3 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 1.9e-130
Identity = 240/278 (86.33%), Postives = 240/278 (86.33%), Query Frame = 0


Query: 1   MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISS 60
           MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISS
Sbjct: 1   MISNYFPFSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISS 60

Query: 61  TVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEE 120
           TVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEE
Sbjct: 61  TVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEE 120

Query: 121 AFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQY 180
           AFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQY
Sbjct: 121 AFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQY 180

Query: 181 GVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRV----------------------- 240
           GVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRV                       
Sbjct: 181 GVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWSDFLCTIRLCGSVAKTLLVLSV 240

Query: 241 --------------CYSIEERTVTRWSPEQCRENPAEV 242
                          YSIEERTVTRWSPEQCRENPAEV
Sbjct: 241 NDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV 278

[Close]

BLAST of Cmc11g0305671 vs. ExPASy TrEMBL
Match: A0A0A0KEN4 (tRNA-intron lyase OS=Cucumis sativus OX=3659 GN=Csa_6G290260 PE=3 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 3.4e-111
Identity = 210/271 (77.49%), Postives = 215/271 (79.34%), Query Frame = 0


Query: 8   FSFNLLSPPPHSSFSLLSRVVAVDFTVSPPASMAPRWKGKASEAKALADPISSTVLHLQS 67
           F   L  P     F LLS V AVDFTVSPPASMAPRWKGKASEAKALADPIS+T+LHLQS
Sbjct: 11  FFIQLTLPAAAHFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTLLHLQS 70

Query: 68  SFIQSNARGLLSGSTILYLADEEQTDLLNRTCFGRQILTAEKDKQWFQFGMEEAFYLSYH 127
           SFI SNA+GLLSGS ILYLADEEQTDLLNRTCFGR ILTAEKDKQWFQFGMEEAFYLSYH
Sbjct: 71  SFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYH 130

Query: 128 LNCLKIVDGQDCEMNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAY 187
           LNCLKIVDGQDCE NFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAY
Sbjct: 131 LNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAY 190

Query: 188 RHHPALVHSEFAVLVLSEGRDSNGNGRLRV------------------------------ 242
           RHHP+LVHSEFAVLVL EGRDSNGNGRLRV                              
Sbjct: 191 RHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGF 250

[Close]

BLAST of Cmc11g0305671 vs. ExPASy TrEMBL
Match: A0A5A7SVN0 (tRNA-intron lyase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00650 PE=3 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 6.1e-108
Identity = 201/239 (84.10%), Postives = 201/239 (84.10%), Query Frame = 0


Query: 40  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTC 99
           MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTC
Sbjct: 1   MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTC 60

Query: 100 FGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPE 159
           FGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPE
Sbjct: 61  FGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPE 120

Query: 160 FYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRV-- 219
           FYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRV  
Sbjct: 121 FYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRVWS 180

Query: 220 -----------------------------------CYSIEERTVTRWSPEQCRENPAEV 242
                                               YSIEERTVTRWSPEQCRENPAEV
Sbjct: 181 DFLCTIRLCGSVAKTLLVLSVNDNGSEFVSPSCLDSYSIEERTVTRWSPEQCRENPAEV 239

[Close]

BLAST of Cmc11g0305671 vs. ExPASy TrEMBL
Match: A0A6J1G716 (tRNA-intron lyase OS=Cucurbita moschata OX=3662 GN=LOC111451414 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 7.0e-88
Identity = 166/237 (70.04%), Postives = 179/237 (75.53%), Query Frame = 0


Query: 40  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTC 99
           M PRWKGK SEAKALADP+S  VL LQSS  QS+A+GLLS  ++LY ADEEQ +LLNR C
Sbjct: 1   MGPRWKGKGSEAKALADPVSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60

Query: 100 FGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPE 159
           FGR I++AEKDKQWFQFGMEEAFYLSY+LNCLKIVDGQDCE NF ELW YMK+QKATFPE
Sbjct: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYYLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120

Query: 160 FYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRV-- 219
           FY AY++LR+KNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG  SN NGRLRV  
Sbjct: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGSNENGRLRVWS 180

Query: 220 -----------------------------------CYSIEERTVTRWSPEQCRENPA 240
                                               YSIEERTVTRWSPEQCRENPA
Sbjct: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPA 237

[Close]

BLAST of Cmc11g0305671 vs. TAIR 10
Match: AT5G60230.2 (splicing endonuclease 2 )

HSP 1 Score: 209.1 bits (531), Expect = 3.8e-54
Identity = 110/233 (47.21%), Postives = 143/233 (61.37%), Query Frame = 0


Query: 39  SMAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRT 98
           SMAPRWK K +EAKALA+PIS +V  LQ S  ++ + G LS   +L   + EQ +LL+R 
Sbjct: 5   SMAPRWKWKGAEAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRC 64

Query: 99  CFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFP 158
           CFGR +L+AEK K+W Q   EEAF+L Y+L C+KI     C  N  + W YMK+++  FP
Sbjct: 65  CFGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLENEVDTWLYMKSKRPNFP 124

Query: 159 EFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDS--------- 218
            F+ AY HLR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV S   D          
Sbjct: 125 MFFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLVQSGDSDRLRVWSDIHC 184

Query: 219 -----------------NGNGR-----LRVC---YSIEERTVTRWSPEQCREN 238
                            NGN +     L VC   +++EE+T++RWSPE  RE+
Sbjct: 185 AVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSRED 237

[Close]

BLAST of Cmc11g0305671 vs. TAIR 10
Match: AT5G60230.1 (splicing endonuclease 2 )

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-53
Identity = 109/232 (46.98%), Postives = 142/232 (61.21%), Query Frame = 0


Query: 40  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTC 99
           MAPRWK K +EAKALA+PIS +V  LQ S  ++ + G LS   +L   + EQ +LL+R C
Sbjct: 1   MAPRWKWKGAEAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRCC 60

Query: 100 FGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFPE 159
           FGR +L+AEK K+W Q   EEAF+L Y+L C+KI     C  N  + W YMK+++  FP 
Sbjct: 61  FGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLENEVDTWLYMKSKRPNFPM 120

Query: 160 FYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDS---------- 219
           F+ AY HLR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV S   D           
Sbjct: 121 FFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLVQSGDSDRLRVWSDIHCA 180

Query: 220 ----------------NGNGR-----LRVC---YSIEERTVTRWSPEQCREN 238
                           NGN +     L VC   +++EE+T++RWSPE  RE+
Sbjct: 181 VRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSRED 232

[Close]

BLAST of Cmc11g0305671 vs. TAIR 10
Match: AT3G45590.1 (splicing endonuclease 1 )

HSP 1 Score: 202.6 bits (514), Expect = 3.6e-52
Identity = 112/238 (47.06%), Postives = 140/238 (58.82%), Query Frame = 0


Query: 40  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTC 99
           MAPRWK K +EAKALA+P+S TV  L+SS  Q+ A G LS   +L   + E+ +LL+R C
Sbjct: 1   MAPRWKWKGAEAKALAEPVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAELLDRCC 60

Query: 100 FGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQDCEMNFQELWRYMKTQKATFP 159
           FGR ++ AEKDK+W Q   EEAF+L Y L C+KI + G+  E N  +LWR M + K  F 
Sbjct: 61  FGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHGRSLE-NEVDLWRSMSSFKQDFA 120

Query: 160 EFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRV- 219
             Y AY HLR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV S G    GN RL+V 
Sbjct: 121 ILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLVQSIG----GNDRLKVW 180

Query: 220 -----------------------------------C---YSIEERTVTRWSPEQCREN 238
                                              C   Y++EE+T+ RWSPE  RE+
Sbjct: 181 SDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSRED 233

[Close]

BLAST of Cmc11g0305671 vs. TAIR 10
Match: AT3G45590.2 (splicing endonuclease 1 )

HSP 1 Score: 202.6 bits (514), Expect = 3.6e-52
Identity = 112/238 (47.06%), Postives = 140/238 (58.82%), Query Frame = 0


Query: 40  MAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRTC 99
           MAPRWK K +EAKALA+P+S TV  L+SS  Q+ A G LS   +L   + E+ +LL+R C
Sbjct: 1   MAPRWKWKGAEAKALAEPVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAELLDRCC 60

Query: 100 FGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQDCEMNFQELWRYMKTQKATFP 159
           FGR ++ AEKDK+W Q   EEAF+L Y L C+KI + G+  E N  +LWR M + K  F 
Sbjct: 61  FGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHGRSLE-NEVDLWRSMSSFKQDFA 120

Query: 160 EFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDSNGNGRLRV- 219
             Y AY HLR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV S G    GN RL+V 
Sbjct: 121 ILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLVQSIG----GNDRLKVW 180

Query: 220 -----------------------------------C---YSIEERTVTRWSPEQCREN 238
                                              C   Y++EE+T+ RWSPE  RE+
Sbjct: 181 SDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSRED 233

[Close]

BLAST of Cmc11g0305671 vs. TAIR 10
Match: AT3G45577.1 (tRNA-intron endonucleases )

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-16
Identity = 51/133 (38.35%), Postives = 63/133 (47.37%), Query Frame = 0


Query: 39  SMAPRWKGKASEAKALADPISSTVLHLQSSFIQSNARGLLSGSTILYLADEEQTDLLNRT 98
           SMAPRWK                            A G LS   +      EQ +LL+R 
Sbjct: 16  SMAPRWKW---------------------------ALGFLSSCNVFL---SEQAELLDRY 75

Query: 99  CFGRQILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEMNFQELWRYMKTQKATFP 158
           CFGR +  AEKDK+W Q   EEAF+L Y L C+KI       +N  +LWR +++ K  F 
Sbjct: 76  CFGRLVFGAEKDKRWIQLSYEEAFFLFYKLKCIKISLHGRSLVNGVDLWRSIRSFKPNFT 118

Query: 159 EFYIAYRHLRLKN 172
             Y AY HLR KN
Sbjct: 136 ILYKAYSHLRSKN 118

The following BLAST results are available for this feature:

BLAST of Cmc11g0305671 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463900.1	7.5e-137	100.00	PREDICTED: tRNA-splicing endonuclease subunit Sen2-1 isoform X2 [Cucumis melo]	[more]
XP_008463899.1	4.0e-130	86.33	PREDICTED: tRNA-splicing endonuclease subunit Sen2-1 isoform X1 [Cucumis melo]	[more]
XP_004149565.1	7.1e-111	77.49	tRNA-splicing endonuclease subunit Sen2-1 [Cucumis sativus] >KGN47294.1 hypothet...	[more]
KAA0035302.1	1.3e-107	84.10	tRNA-splicing endonuclease subunit Sen2-1 isoform X1 [Cucumis melo var. makuwa] ...	[more]
XP_038900547.1	9.7e-92	73.22	tRNA-splicing endonuclease subunit Sen2-1 [Benincasa hispida] >XP_038900548.1 tR...	[more]

BLAST of Cmc11g0305671 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSS3	1.6e-52	46.98	tRNA-splicing endonuclease subunit Sen2-2 OS=Arabidopsis thaliana OX=3702 GN=SEN...	[more]
Q9M1E8	5.0e-51	47.06	tRNA-splicing endonuclease subunit Sen2-1 OS=Arabidopsis thaliana OX=3702 GN=SEN...	[more]
Q5Z6B1	5.1e-43	42.86	Probable tRNA-splicing endonuclease subunit Sen2 OS=Oryza sativa subsp. japonica...	[more]
Q5ZIN2	5.4e-13	35.24	tRNA-splicing endonuclease subunit Sen2 OS=Gallus gallus OX=9031 GN=TSEN2 PE=2 S...	[more]
Q6P7W5	5.4e-13	34.86	tRNA-splicing endonuclease subunit Sen2 OS=Mus musculus OX=10090 GN=Tsen2 PE=1 S...	[more]

BLAST of Cmc11g0305671 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CKR5	3.7e-137	100.00	tRNA-intron lyase OS=Cucumis melo OX=3656 GN=LOC103501916 PE=3 SV=1	[more]
A0A1S3CK86	1.9e-130	86.33	tRNA-intron lyase OS=Cucumis melo OX=3656 GN=LOC103501916 PE=3 SV=1	[more]
A0A0A0KEN4	3.4e-111	77.49	tRNA-intron lyase OS=Cucumis sativus OX=3659 GN=Csa_6G290260 PE=3 SV=1	[more]
A0A5A7SVN0	6.1e-108	84.10	tRNA-intron lyase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G006...	[more]
A0A6J1G716	7.0e-88	70.04	tRNA-intron lyase OS=Cucurbita moschata OX=3662 GN=LOC111451414 PE=3 SV=1	[more]

BLAST of Cmc11g0305671 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60230.2	3.8e-54	47.21	splicing endonuclease 2	[more]
AT5G60230.1	1.1e-53	46.98	splicing endonuclease 2	[more]
AT3G45590.1	3.6e-52	47.06	splicing endonuclease 1	[more]
AT3G45590.2	3.6e-52	47.06	splicing endonuclease 1	[more]
AT3G45577.1	1.9e-16	38.35	tRNA-intron endonucleases	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006678	tRNA intron endonuclease, N-terminal	PFAM	PF02778	tRNA_int_endo_N	coord: 75..147 e-value: 8.6E-12 score: 44.5
IPR006677	tRNA intron endonuclease, catalytic domain-like	PFAM	PF01974	tRNA_int_endo	coord: 161..207 e-value: 4.3E-16 score: 58.7
IPR011856	tRNA endonuclease-like domain superfamily	GENE3D	3.40.1350.10		coord: 156..228 e-value: 9.1E-17 score: 62.9
IPR006676	tRNA-splicing endonuclease	PANTHER	PTHR21227	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2	coord: 40..217
None	No IPR available	PANTHER	PTHR21227:SF2	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2-1-LIKE	coord: 40..217
IPR036167	tRNA intron endonuclease, catalytic domain-like superfamily	SUPERFAMILY	53032	tRNA-intron endonuclease catalytic domain-like	coord: 157..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0305671.1	Cmc11g0305671.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000213	tRNA-intron endonuclease activity
molecular_function	GO:0004518	nuclease activity