Cmc11g0304581 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0304581
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 26018904 .. 26019512 (+)
RNA-Seq Expression	Cmc11g0304581
Synteny	Cmc11g0304581

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATTCGGTTTAACGAATGCGCCAGCGGTTTTCATGGATCTCATGAACAAGATCTTCCATCAGTATTTATATCAGTTTGTGATTGTGTTCACTGATGATATATTAGTTTACTCGGTTGACAGAGAATCCCATGAGGAACATCTAAGGATTGTTCTACAGACTCTACATGATAAACAGTTGTACGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTGGGACATATAGTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTAGAAGCGATTGTCAATTGGGAAAGACCAACTAGTGCGACAGAAGTACGTAGTTGCTTTAGTTTCAAAGGATACTATAGGCGTTTTATTGAGGATTTCTCTCGATTGGCATTGCCTTTTACCGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGGAATTGAAGAAAAGACTAGTCATAGTACCTATTTTGGCACTTCCTGTAACAGGGAAGGACTATGTGATTTATTGTGATGCTTCAAGGCTAGGATTAGGTTGTGTGCTTATGCAAGATGGGAATGTAATAGCTTATGCTTCAAGGTAG

mRNA sequence

ATGTCATTCGGTTTAACGAATGCGCCAGCGGTTTTCATGGATCTCATGAACAAGATCTTCCATCAGTATTTATATCAGTTTGTGATTGTGTTCACTGATGATATATTAGTTTACTCGGTTGACAGAGAATCCCATGAGGAACATCTAAGGATTGTTCTACAGACTCTACATGATAAACAGTTGTACGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTGGGACATATAGTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTAGAAGCGATTGTCAATTGGGAAAGACCAACTAGTGCGACAGAAGTACGTAGTTGCTTTAGTTTCAAAGGATACTATAGGCGTTTTATTGAGGATTTCTCTCGATTGGCATTGCCTTTTACCGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGGAATTGAAGAAAAGACTAGTCATAGTACCTATTTTGGCACTTCCTGTAACAGGGAAGGACTATGTGATTTATTGTGATGCTTCAAGGCTAGGATTAGGTTGTGTGCTTATGCAAGATGGGAATGTAATAGCTTATGCTTCAAGGTAG

Coding sequence (CDS)

ATGTCATTCGGTTTAACGAATGCGCCAGCGGTTTTCATGGATCTCATGAACAAGATCTTCCATCAGTATTTATATCAGTTTGTGATTGTGTTCACTGATGATATATTAGTTTACTCGGTTGACAGAGAATCCCATGAGGAACATCTAAGGATTGTTCTACAGACTCTACATGATAAACAGTTGTACGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTGGGACATATAGTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTAGAAGCGATTGTCAATTGGGAAAGACCAACTAGTGCGACAGAAGTACGTAGTTGCTTTAGTTTCAAAGGATACTATAGGCGTTTTATTGAGGATTTCTCTCGATTGGCATTGCCTTTTACCGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGGAATTGAAGAAAAGACTAGTCATAGTACCTATTTTGGCACTTCCTGTAACAGGGAAGGACTATGTGATTTATTGTGATGCTTCAAGGCTAGGATTAGGTTGTGTGCTTATGCAAGATGGGAATGTAATAGCTTATGCTTCAAGGTAG

Protein sequence

MSFGLTNAPAVFMDLMNKIFHQYLYQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEQVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCFSFKGYYRRFIEDFSRLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASR

Homology

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BLAST of Cmc11g0304581 vs. NCBI nr
Match: KAA0053222.1 (hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 381.3 bits (978), Expect = 5.1e-102
Identity = 188/202 (93.07%), Postives = 191/202 (94.55%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLYQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           MSFGLTNAPAVFMDLMN+IFHQYL QFVIVF DDILVYSVDRESHEEHLRIVLQTL DKQ
Sbjct: 662 MSFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 721

Query: 61  LYAKFSKCEFWLEQVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCFSFKGYYR 120
           LYAKFSKCEFWLEQVVFLGH+VSAKGVSVDPQKVEA+VNWERPTSATEVRS     GYYR
Sbjct: 722 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 781

Query: 121 RFIEDFSRLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALPVTGKDYVIYCD 180
           RFIEDFSRLALP TALTRKNAKFEWSDKCEQSFQELKKRLV  PILALPVTGKDYVIYCD
Sbjct: 782 RFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 841

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 842 ASRLGLGCVLMQDGNVIAYASR 863

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BLAST of Cmc11g0304581 vs. NCBI nr
Match: KAA0050493.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 372.5 bits (955), Expect = 2.4e-99
Identity = 183/202 (90.59%), Postives = 188/202 (93.07%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLYQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           M FGLTNAPAVFMDLMN+IFH+YL QFVIVF DDILVYSVDRESHEEHLRIVLQTL +KQ
Sbjct: 333 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 392

Query: 61  LYAKFSKCEFWLEQVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCFSFKGYYR 120
           LYAKFSKCEFWLEQVVFLGH+VSAKGVSVDPQKVEA+VNWERP SATEVRS     GYYR
Sbjct: 393 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 452

Query: 121 RFIEDFSRLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALPVTGKDYVIYCD 180
           RFIEDFSRLALP TALTRKN KFEWSDKCEQSFQELKKRLV  PILALPVTGKDYVIYCD
Sbjct: 453 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 512

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 513 ASRLGLGCVLMQDGNVIAYASR 534

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BLAST of Cmc11g0304581 vs. NCBI nr
Match: KAA0050527.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 372.5 bits (955), Expect = 2.4e-99
Identity = 183/202 (90.59%), Postives = 188/202 (93.07%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLYQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           M FGLTNAPAVFMDLMN+IFH+YL QFVIVF DDILVYSVDRESHEEHLRIVLQTL +KQ
Sbjct: 440 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 499

Query: 61  LYAKFSKCEFWLEQVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCFSFKGYYR 120
           LYAKFSKCEFWLEQVVFLGH+VSAKGVSVDPQKVEA+VNWERP SATEVRS     GYYR
Sbjct: 500 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 559

Query: 121 RFIEDFSRLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALPVTGKDYVIYCD 180
           RFIEDFSRLALP TALTRKN KFEWSDKCEQSFQELKKRLV  PILALPVTGKDYVIYCD
Sbjct: 560 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 619

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 620 ASRLGLGCVLMQDGNVIAYASR 641

[Close]

BLAST of Cmc11g0304581 vs. NCBI nr
Match: KAA0066849.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 372.5 bits (955), Expect = 2.4e-99
Identity = 183/202 (90.59%), Postives = 188/202 (93.07%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLYQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           M FGLTNAPAVFMDLMN+IFH+YL QFVIVF DDILVYSVDRESHEEHLRIVLQTL +KQ
Sbjct: 779 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 838

Query: 61  LYAKFSKCEFWLEQVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCFSFKGYYR 120
           LYAKFSKCEFWLEQVVFLGH+VSAKGVSVDPQKVEA+VNWERP SATEVRS     GYYR
Sbjct: 839 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 898

Query: 121 RFIEDFSRLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALPVTGKDYVIYCD 180
           RFIEDFSRLALP TALTRKN KFEWSDKCEQSFQELKKRLV  PILALPVTGKDYVIYCD
Sbjct: 899 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 958

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 959 ASRLGLGCVLMQDGNVIAYASR 980

[Close]

BLAST of Cmc11g0304581 vs. NCBI nr
Match: KAA0035455.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >KAA0046782.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK01987.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK03719.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK25877.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 372.5 bits (955), Expect = 2.4e-99
Identity = 183/202 (90.59%), Postives = 188/202 (93.07%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLYQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           M FGLTNAPAVFMDLMN+IFH+YL QFVIVF DDILVYSVDRESHEEHLRIVLQTL +KQ
Sbjct: 779 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 838

Query: 61  LYAKFSKCEFWLEQVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCFSFKGYYR 120
           LYAKFSKCEFWLEQVVFLGH+VSAKGVSVDPQKVEA+VNWERP SATEVRS     GYYR
Sbjct: 839 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 898

Query: 121 RFIEDFSRLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALPVTGKDYVIYCD 180
           RFIEDFSRLALP TALTRKN KFEWSDKCEQSFQELKKRLV  PILALPVTGKDYVIYCD
Sbjct: 899 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 958

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 959 ASRLGLGCVLMQDGNVIAYASR 980

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BLAST of Cmc11g0304581 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.2e-35
Identity = 80/204 (39.22%), Postives = 121/204 (59.31%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLYQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           M FGL NAPA F   MN I    L +  +V+ DDI+++S     H   +++V   L D  
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKCEFWLEQVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCFSFKGYYR 120
           L  +  KCEF  ++  FLGHIV+  G+  +P KV+AIV++  PT   E+R+     GYYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFIEDFSRLALPFTALTRKNAKFEWSDKCE--QSFQELKKRLVIVPILALPVTGKDYVIY 180
           +FI +++ +A P T+  +K  K + + K E  ++F++LK  ++  PIL LP   K +V+ 
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKID-TQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLT 512

Query: 181 CDASRLGLGCVLMQDGNVIAYASR 203
            DAS L LG VL Q+G+ I++ SR
Sbjct: 513 TDASNLALGAVLSQNGHPISFISR 535

[Close]

BLAST of Cmc11g0304581 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.6e-34
Identity = 75/203 (36.95%), Postives = 119/203 (58.62%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLYQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           M FGL NAPA F   MN I    L +  +V+ DDI+V+S   + H + L +V + L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKCEFWLEQVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCFSFKGYYR 120
           L  +  KCEF  ++  FLGH+++  G+  +P+K+EAI  +  PT   E+++     GYYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFIEDFSRLALPFTALTRKNAKFEWSD-KCEQSFQELKKRLVIVPILALPVTGKDYVIYC 180
           +FI +F+ +A P T   +KN K + ++ + + +F++LK  +   PIL +P   K + +  
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513

Query: 181 DASRLGLGCVLMQDGNVIAYASR 203
           DAS + LG VL QDG+ ++Y SR
Sbjct: 514 DASDVALGAVLSQDGHPLSYISR 536

[Close]

BLAST of Cmc11g0304581 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 7.5e-32
Identity = 84/217 (38.71%), Postives = 118/217 (54.38%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLYQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           + FGL NAPA+F  +++ I  +++ +   V+ DDI+V+S D ++H ++LR+VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFSKCEFWLEQVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCFSFKGYYR 120
           L     K  F   QV FLG+IV+A G+  DP+KV AI     PTS  E++       YYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFIEDFSRLALPFTALTR---KNAKFEWSDKCE--------QSFQELKKRLVIVPILALP 180
           +FI+D++++A P T LTR    N K   S K          QSF +LK  L    ILA P
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFP 429

Query: 181 VTGKDYVIYCDASRLGLGCVLMQD----GNVIAYASR 203
              K + +  DAS   +G VL QD       IAY SR
Sbjct: 430 CFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISR 466

[Close]

BLAST of Cmc11g0304581 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.6e-26
Identity = 69/206 (33.50%), Postives = 106/206 (51.46%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLYQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           + FGL  AP  F  +M   F         ++ DD++V     +   ++L  V     +  
Sbjct: 442 LPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYN 501

Query: 61  LYAKFSKCEFWLEQVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCFSFKGYYR 120
           L     KC F++ +V FLGH  + KG+  D +K + I N+  P  A   R   +F  YYR
Sbjct: 502 LKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYR 561

Query: 121 RFIEDFSRLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALPVTGKDYVIYCD 180
           RFI++F+  +   T L +KN  FEW+D+C+++F  LK +L+   +L  P   K++ I  D
Sbjct: 562 RFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTD 621

Query: 181 ASRLGLGCVLMQDGN----VIAYASR 203
           AS+   G VL Q+ N     +AYASR
Sbjct: 622 ASKQACGAVLTQNHNGHQLPVAYASR 647

[Close]

BLAST of Cmc11g0304581 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 6.8e-25
Identity = 68/214 (31.78%), Postives = 106/214 (49.53%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLYQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           + FGL NA ++F   ++ +  + + +   V+ DD++++S +   H  H+  VL+ L D  
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  LYAKFSKCEFWLEQVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCFSFKGYYR 120
           +     K  F+ E V +LG IVS  G   DP+KV+AI  +  P    +VRS      YYR
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428

Query: 121 RFIEDFSRLALPFTALTR-----------KNAKFEWSDKCEQSFQELKKRLVIVP-ILAL 180
            FI+DF+ +A P T + +           K    E+++    +FQ L+  L     IL  
Sbjct: 429 VFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKY 488

Query: 181 PVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASR 203
           P   K + +  DAS  G+G VL Q+G  I   SR
Sbjct: 489 PDFKKPFDLTTDASASGIGAVLSQEGRPITMISR 522

[Close]

BLAST of Cmc11g0304581 vs. ExPASy TrEMBL
Match: A0A5A7UBV9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00060 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 2.5e-102
Identity = 188/202 (93.07%), Postives = 191/202 (94.55%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLYQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           MSFGLTNAPAVFMDLMN+IFHQYL QFVIVF DDILVYSVDRESHEEHLRIVLQTL DKQ
Sbjct: 662 MSFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 721

Query: 61  LYAKFSKCEFWLEQVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCFSFKGYYR 120
           LYAKFSKCEFWLEQVVFLGH+VSAKGVSVDPQKVEA+VNWERPTSATEVRS     GYYR
Sbjct: 722 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 781

Query: 121 RFIEDFSRLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALPVTGKDYVIYCD 180
           RFIEDFSRLALP TALTRKNAKFEWSDKCEQSFQELKKRLV  PILALPVTGKDYVIYCD
Sbjct: 782 RFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 841

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 842 ASRLGLGCVLMQDGNVIAYASR 863

[Close]

BLAST of Cmc11g0304581 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.1e-99
Identity = 183/202 (90.59%), Postives = 188/202 (93.07%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLYQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           M FGLTNAPAVFMDLMN+IFH+YL QFVIVF DDILVYSVDRESHEEHLRIVLQTL +KQ
Sbjct: 741 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 800

Query: 61  LYAKFSKCEFWLEQVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCFSFKGYYR 120
           LYAKFSKCEFWLEQVVFLGH+VSAKGVSVDPQKVEA+VNWERP SATEVRS     GYYR
Sbjct: 801 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 860

Query: 121 RFIEDFSRLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALPVTGKDYVIYCD 180
           RFIEDFSRLALP TALTRKN KFEWSDKCEQSFQELKKRLV  PILALPVTGKDYVIYCD
Sbjct: 861 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 920

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 921 ASRLGLGCVLMQDGNVIAYASR 942

[Close]

BLAST of Cmc11g0304581 vs. ExPASy TrEMBL
Match: A0A5D3BHI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00450 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.1e-99
Identity = 183/202 (90.59%), Postives = 188/202 (93.07%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLYQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           M FGLTNAPAVFMDLMN+IFH+YL QFVIVF DDILVYSVDRESHEEHLRIVLQTL +KQ
Sbjct: 779 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 838

Query: 61  LYAKFSKCEFWLEQVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCFSFKGYYR 120
           LYAKFSKCEFWLEQVVFLGH+VSAKGVSVDPQKVEA+VNWERP SATEVRS     GYYR
Sbjct: 839 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 898

Query: 121 RFIEDFSRLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALPVTGKDYVIYCD 180
           RFIEDFSRLALP TALTRKN KFEWSDKCEQSFQELKKRLV  PILALPVTGKDYVIYCD
Sbjct: 899 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 958

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 959 ASRLGLGCVLMQDGNVIAYASR 980

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BLAST of Cmc11g0304581 vs. ExPASy TrEMBL
Match: A0A5A7T1Y5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00980 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.1e-99
Identity = 183/202 (90.59%), Postives = 188/202 (93.07%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLYQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           M FGLTNAPAVFMDLMN+IFH+YL QFVIVF DDILVYSVDRESHEEHLRIVLQTL +KQ
Sbjct: 779 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 838

Query: 61  LYAKFSKCEFWLEQVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCFSFKGYYR 120
           LYAKFSKCEFWLEQVVFLGH+VSAKGVSVDPQKVEA+VNWERP SATEVRS     GYYR
Sbjct: 839 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 898

Query: 121 RFIEDFSRLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALPVTGKDYVIYCD 180
           RFIEDFSRLALP TALTRKN KFEWSDKCEQSFQELKKRLV  PILALPVTGKDYVIYCD
Sbjct: 899 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 958

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 959 ASRLGLGCVLMQDGNVIAYASR 980

[Close]

BLAST of Cmc11g0304581 vs. ExPASy TrEMBL
Match: A0A5A7UUL6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold132G00090 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.1e-99
Identity = 183/202 (90.59%), Postives = 188/202 (93.07%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLYQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           M FGLTNAPAVFMDLMN+IFH+YL QFVIVF DDILVYSVDRESHEEHLRIVLQTL +KQ
Sbjct: 411 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 470

Query: 61  LYAKFSKCEFWLEQVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCFSFKGYYR 120
           LYAKFSKCEFWLEQVVFLGH+VSAKGVSVDPQKVEA+VNWERP SATEVRS     GYYR
Sbjct: 471 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 530

Query: 121 RFIEDFSRLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALPVTGKDYVIYCD 180
           RFIEDFSRLALP TALTRKN KFEWSDKCEQSFQELKKRLV  PILALPVTGKDYVIYCD
Sbjct: 531 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 590

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 591 ASRLGLGCVLMQDGNVIAYASR 612

[Close]

BLAST of Cmc11g0304581 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 108.6 bits (270), Expect = 5.9e-24
Identity = 51/124 (41.13%), Postives = 76/124 (61.29%), Query Frame = 0


Query: 48  HLRIVLQTLHDKQLYAKFSKCEFWLEQVVFLG--HIVSAKGVSVDPQKVEAIVNWERPTS 107
           HL +VLQ     Q YA   KC F   Q+ +LG  HI+S +GVS DP K+EA+V W  P +
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 ATEVRSCFSFKGYYRRFIEDFSRLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPI 167
            TE+R      GYYRRF++++ ++  P T L +KN+  +W++    +F+ LK  +  +P+
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 168 LALP 170
           LALP
Sbjct: 123 LALP 125

The following BLAST results are available for this feature:

BLAST of Cmc11g0304581 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053222.1	5.1e-102	93.07	hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa]	[more]
KAA0050493.1	2.4e-99	90.59	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0050527.1	2.4e-99	90.59	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0066849.1	2.4e-99	90.59	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0035455.1	2.4e-99	90.59	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >KAA0046782.1...	[more]

BLAST of Cmc11g0304581 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	4.2e-35	39.22	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	1.6e-34	36.95	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	7.5e-32	38.71	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10394	3.6e-26	33.50	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]
P10401	6.8e-25	31.78	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]

BLAST of Cmc11g0304581 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UBV9	2.5e-102	93.07	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U2V7	1.1e-99	90.59	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5D3BHI1	1.1e-99	90.59	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T1Y5	1.1e-99	90.59	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold43...	[more]
A0A5A7UUL6	1.1e-99	90.59	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]

BLAST of Cmc11g0304581 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	5.9e-24	41.13	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..176 e-value: 1.8E-26 score: 93.9
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..87 e-value: 1.9E-30 score: 107.4
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 145..202 e-value: 1.0E-14 score: 54.3
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..81 e-value: 5.2E-14 score: 52.3
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..82 score: 9.798072
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 80..202
None	No IPR available	PANTHER	PTHR24559:SF355	PROTEIN, PUTATIVE-RELATED	coord: 80..202
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 2.09044E-34 score: 118.467
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0304581.1	Cmc11g0304581.1	mRNA