Cmc11g0304441 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0304441
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 25928848 .. 25930653 (+)
RNA-Seq Expression	Cmc11g0304441
Synteny	Cmc11g0304441

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCAGGTAATCTCAGCCATCAGGGCCAGTAAATTGCTCAGTCAGGGTACTTGGGGTATCTTAGCGAGCGTGGTGGATACTAGAGAGGTCGATGTATCCCTGTCATCAGAACCGGTGGTGAGGGACTATCCGGATGTCTTTCCTGAAGAACTTTCAGGGTTACCTCCTCACAGAGAGGTTGAGTTTGCCATAGAGTTGGAGCCAGGCACGGTTCCTATATCCAGAGCCCCTTACAGAATGGCCCCCGCAGAGCTGAAAGAACTAAAAGTGCAGTTACAGGAGTTGCTCGATAAGGGATTCATTCGACCGAGTGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATTGATGCGTCTATGCATTGACTACAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCTATAGTGTTCTCTAGGATTGATCTTCGGTCGGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACAGCATTTCGTTCCAGATATGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGACAGTGTTTATGGACTTGATGAACAGAGTGTTCAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATCTAGATATATTCCAAGACGGAGGCTGAGCATGAGGAGCATTTACGTATGGTTTTGCAAACACTTCGAGATAATAAGTTGTATGCAAAGTTCTTGAAATGCGAGTTTTGGCTGAAGCAGCTGTCCTTTCTAGGCCATGTGGTTTCTAAGGCAAGAGTTTCTTTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGACCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGAACAGTTTCTAAAACCTTAAACAGAAGCTAGTTACTGCACCGGTTCTTACTGTACCTGATGGTTTTGGCAGTTTTGTGATTTATAGTGATGCTTCCAAGAAGGGTTTGGGTTGTGTTTTGATGCAACAAGGTAAGGTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACACATGATTTAGAGTTGGCAGCAGTGGTTTTTGCTTTGAAAATATGGAGGCATTACTTATATGGTGAAAAGATACAGATCTTCACGAATCATAAGAGCTTGAAATACTTCTTTACTCAGAAGGAATTGAATATGAGACAGCGAAGATTGCTTGAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCATTCAGGCAAGGCAAATGTGGTAGCTGATGCTCTTAGTAGAAAGGTATCACATTCAGCAGCACTTATTACCCGACAGGCCCCATTGCATCGAGATCTTGAGCGGGCTGAGATTGCAGTGTCAGTGGGAGCAGCCACTATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAAAGGATCATTGATGCTCAGAGTAACGATCCTTATTTGGATGAGAAGCGGGGCCTAGCAGAGGCAGGGCAGACGGTTGAGTTCTCCATATCCTCTGATGGTGGACTTTTGTTTGAGAGACGCCTCTGTGTGCCATCAGATAGTGCGGTTAAAACAGAATTATTATCTGAGGCTCACAGTTCCCCATGCACCAAGGTAGTACGAAGATGTATCAGGACCTGA

mRNA sequence

ATGCCTCAGGTAATCTCAGCCATCAGGGCCAGTAAATTGCTCAGTCAGGGTACTTGGGGTATCTTAGCGAGCGTGGTGGATACTAGAGAGGTCGATGTATCCCTGTCATCAGAACCGGTGGTGAGGGACTATCCGGATGTCTTTCCTGAAGAACTTTCAGGGTTACCTCCTCACAGAGAGGTTGAGTTTGCCATAGAGTTGGAGCCAGGCACGGTTCCTATATCCAGAGCCCCTTACAGAATGGCCCCCGCAGAGCTGAAAGAACTAAAAGTGCAGTTACAGGAGTTGCTCGATAAGGGATTCATTCGACCGAGTGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATTGATGCGTCTATGCATTGACTACAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCTATAGTGTTCTCTAGGATTGATCTTCGGTCGGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACAGCATTTCGTTCCAGATATGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGACAGTGTTTATGGACTTGATGAACAGAGTGTTCAGGGAGTTCCTAGACACTTTTGTGATCCTGTCCTTTCTAGGCCATGTGGTTTCTAAGGCAAGAGTTTCTTTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGACCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGTTACTGCACCGGTTCTTACTGTACCTGATGGTTTTGGCAGTTTTGTGATTTATAGTGATGCTTCCAAGAAGGGTTTGGGTTGTGTTTTGATGCAACAAGGTAAGGTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACACATGATTTAGAGTTGGCAGCAGTGGTTTTTGCTTTGAAAATATGGAGGCATTACTTATATGGTGAAAAGATACAGATCTTCACGAATCATAAGAGCTTGAAATACTTCTTTACTCAGAAGGAATTGAATATGAGACAGCGAAGATTGCTTGAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCATTCAGGCAAGGCAAATGTGGTAGCTGATGCTCTTAGTAGAAAGGTATCACATTCAGCAGCACTTATTACCCGACAGGCCCCATTGCATCGAGATCTTGAGCGGGCTGAGATTGCAGTGTCAGTGGGAGCAGCCACTATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAAAGGATCATTGATGCTCAGAGTAACGATCCTTATTTGGATGAGAAGCGGGGCCTAGCAGAGGCAGGGCAGACGGTTGAGTTCTCCATATCCTCTGATGGTGGACTTTTGTTTGAGAGACGCCTCTGTGTGCCATCAGATAGTGCGGTTAAAACAGAATTATTATCTGAGGCTCACAGTTCCCCATGCACCAAGGTAGTACGAAGATGTATCAGGACCTGA

Coding sequence (CDS)

ATGCCTCAGGTAATCTCAGCCATCAGGGCCAGTAAATTGCTCAGTCAGGGTACTTGGGGTATCTTAGCGAGCGTGGTGGATACTAGAGAGGTCGATGTATCCCTGTCATCAGAACCGGTGGTGAGGGACTATCCGGATGTCTTTCCTGAAGAACTTTCAGGGTTACCTCCTCACAGAGAGGTTGAGTTTGCCATAGAGTTGGAGCCAGGCACGGTTCCTATATCCAGAGCCCCTTACAGAATGGCCCCCGCAGAGCTGAAAGAACTAAAAGTGCAGTTACAGGAGTTGCTCGATAAGGGATTCATTCGACCGAGTGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATTGATGCGTCTATGCATTGACTACAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCTATAGTGTTCTCTAGGATTGATCTTCGGTCGGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACAGCATTTCGTTCCAGATATGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGACAGTGTTTATGGACTTGATGAACAGAGTGTTCAGGGAGTTCCTAGACACTTTTGTGATCCTGTCCTTTCTAGGCCATGTGGTTTCTAAGGCAAGAGTTTCTTTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGACCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGTTACTGCACCGGTTCTTACTGTACCTGATGGTTTTGGCAGTTTTGTGATTTATAGTGATGCTTCCAAGAAGGGTTTGGGTTGTGTTTTGATGCAACAAGGTAAGGTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACACATGATTTAGAGTTGGCAGCAGTGGTTTTTGCTTTGAAAATATGGAGGCATTACTTATATGGTGAAAAGATACAGATCTTCACGAATCATAAGAGCTTGAAATACTTCTTTACTCAGAAGGAATTGAATATGAGACAGCGAAGATTGCTTGAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCATTCAGGCAAGGCAAATGTGGTAGCTGATGCTCTTAGTAGAAAGGTATCACATTCAGCAGCACTTATTACCCGACAGGCCCCATTGCATCGAGATCTTGAGCGGGCTGAGATTGCAGTGTCAGTGGGAGCAGCCACTATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAAAGGATCATTGATGCTCAGAGTAACGATCCTTATTTGGATGAGAAGCGGGGCCTAGCAGAGGCAGGGCAGACGGTTGAGTTCTCCATATCCTCTGATGGTGGACTTTTGTTTGAGAGACGCCTCTGTGTGCCATCAGATAGTGCGGTTAAAACAGAATTATTATCTGAGGCTCACAGTTCCCCATGCACCAAGGTAGTACGAAGATGTATCAGGACCTGA

Protein sequence

MPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELSGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGLMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAIVFSRIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVILSFLGHVVSKARVSLDPAKIEAVTSWTRPSTVSEVRSFLGLAVTAPVLTVPDGFGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRLLELVKDYDCEILYHSGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAATMQLAQLTVQPTLRQRIIDAQSNDPYLDEKRGLAEAGQTVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPCTKVVRRCIRT

Homology

[Close]

BLAST of Cmc11g0304441 vs. NCBI nr
Match: KAA0036553.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 906.4 bits (2341), Expect = 1.1e-259
Identity = 479/567 (84.48%), Postives = 485/567 (85.54%), Query Frame = 0


Query: 1   MPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELSGLPPHRE 60
           +PQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEEL GLPPHRE
Sbjct: 387 LPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHRE 446

Query: 61  VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 120
           VEFAIELEP TVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD
Sbjct: 447 VEFAIELEPDTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 506

Query: 121 GLMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAIVFSRIDLRSGYHQLRIKDGDVPK 180
           G MRLCIDYRELNKVTVKNRYPLP IDDLFDQLQ A VFS+IDLRSGYHQLRIKDGDVPK
Sbjct: 507 GSMRLCIDYRELNKVTVKNRYPLPWIDDLFDQLQEATVFSKIDLRSGYHQLRIKDGDVPK 566

Query: 181 TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFV------------------ 240
           TAFRSRYGHYEFIVMSFGLTNAP VFMDLMNRVFREFLDTFV                  
Sbjct: 567 TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 626

Query: 241 ----ILSFLGHVVSKARVSLDPAKIEAVTSWTRPSTVSEVRSFLGLA------------- 300
               I+SFLGHVVSKA VS+DPAKIEAVT WTRPSTVSE RSFLGLA             
Sbjct: 627 EHLRIVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEFRSFLGLAGYYRRFVENFSHI 686

Query: 301 -------------------------------VTAPVLTVPDGFGSFVIYSDASKKGLGCV 360
                                          VTAPVLTVPDG GSFVIYSDASKKGLGCV
Sbjct: 687 ATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCV 746

Query: 361 LMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTNHKSLKYF 420
           LMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFT+HKSLKYF
Sbjct: 747 LMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYF 806

Query: 421 FTQKELNMRQRRLLELVKDYDCEILYHSGKANVVADALSRKVSHSAALITRQAPLHRDLE 480
           FTQKELNMRQRR LELVKDYDCEILYH GKANVVADALSRKVSHSAALITRQAPLHRDLE
Sbjct: 807 FTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLE 866

Query: 481 RAEIAVSVGAATMQLAQLTVQPTLRQRIIDAQSNDPYLDEKRGLAEAGQTVEFSISSDGG 502
           RAEIAVSVGA TMQLAQLTVQPTLRQRIIDAQSNDPYL EKRGLAEAGQ VEFS+SSDGG
Sbjct: 867 RAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGG 926

[Close]

BLAST of Cmc11g0304441 vs. NCBI nr
Match: KAA0058464.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 905.2 bits (2338), Expect = 2.6e-259
Identity = 479/590 (81.19%), Postives = 488/590 (82.71%), Query Frame = 0


Query: 1   MPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELSGLPPHRE 60
           +PQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYP+VFPEEL GLPPHRE
Sbjct: 232 LPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPNVFPEELPGLPPHRE 291

Query: 61  VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 120
           VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD
Sbjct: 292 VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 351

Query: 121 GLMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAIVFSRIDLRSGYHQLRIKDGDVPK 180
           G MRLCIDYRELNKVTVKNRYPLP+IDDLFDQLQGA VFS+IDLRSGYHQLRIKDGDVPK
Sbjct: 352 GSMRLCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK 411

Query: 181 TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIL---------------- 240
           TAFRSRYGHYEFIVMSFGLTNAP VFMDLMNRVFREFLDTFVI+                
Sbjct: 412 TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIMFIDDILIYSKTEAEHE 471

Query: 241 -----------------------------SFLGHVVSKARVSLDPAKIEAVTSWTRPSTV 300
                                        SFLGHVVSK RVS+DPAKIEAVT WTRPSTV
Sbjct: 472 EHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKVRVSVDPAKIEAVTGWTRPSTV 531

Query: 301 SEVRSFLGLA--------------------------------------------VTAPVL 360
           SEVRSFLGLA                                            VTAPVL
Sbjct: 532 SEVRSFLGLAGYYQRFGENFSRIATPLTQLTRKGAPFVWSKACEDSFQDLKQKLVTAPVL 591

Query: 361 TVPDGFGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 420
           TVPDG+GSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK
Sbjct: 592 TVPDGYGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 651

Query: 421 IWRHYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRLLELVKDYDCEILYHSGKANVVADA 480
           IWRHYLYGEKIQIFT+HKSLKYFFTQKELNMRQRR LELVKDYDCEILYH GKANVVADA
Sbjct: 652 IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA 711

Query: 481 LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAATMQLAQLTVQPTLRQRIIDAQSNDPY 502
           LSRKVSHSAALITRQAPLHRDLERAEIAVSVGA TMQLAQLTVQPTLRQRIIDAQ NDPY
Sbjct: 712 LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQGNDPY 771

[Close]

BLAST of Cmc11g0304441 vs. NCBI nr
Match: TYK01613.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 904.0 bits (2335), Expect = 5.7e-259
Identity = 481/590 (81.53%), Postives = 487/590 (82.54%), Query Frame = 0


Query: 1    MPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELSGLPPHRE 60
            +PQVISAIRASKLLSQGTWGILASVVDTRE DVSLSSEPVVRDYPDVFPEEL GLPPHRE
Sbjct: 754  LPQVISAIRASKLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHRE 813

Query: 61   VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 120
            VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD
Sbjct: 814  VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 873

Query: 121  GLMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAIVFSRIDLRSGYHQLRIKDGDVPK 180
            G MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGA VFS+IDLRSGYHQLRIKD DVPK
Sbjct: 874  GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK 933

Query: 181  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVI----------------- 240
            TAFRSRYGHYEFIVMSFGLTNAP VFMDLMNRVFREFLDTFVI                 
Sbjct: 934  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 993

Query: 241  ----------------------------LSFLGHVVSKARVSLDPAKIEAVTSWTRPSTV 300
                                        +SFLGHVVSKA VS+DPAKIEAVT WTRPSTV
Sbjct: 994  EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTV 1053

Query: 301  SEVRSFLGLA--------------------------------------------VTAPVL 360
            SEVRSFLGLA                                            VTAPVL
Sbjct: 1054 SEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVL 1113

Query: 361  TVPDGFGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 420
            TVPDG GSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK
Sbjct: 1114 TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 1173

Query: 421  IWRHYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRLLELVKDYDCEILYHSGKANVVADA 480
            IWRHYLYGEKIQIFT+HKSLKYFFTQKELNMRQRR LELVKDYDCEILYH GKANVVADA
Sbjct: 1174 IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA 1233

Query: 481  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAATMQLAQLTVQPTLRQRIIDAQSNDPY 502
            LSRKVSHSAALITRQAPLHRDLERAEIAVSVGA TMQLAQLTVQPTLRQRIIDAQSNDPY
Sbjct: 1234 LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPY 1293

[Close]

BLAST of Cmc11g0304441 vs. NCBI nr
Match: KAA0048687.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 902.1 bits (2330), Expect = 2.2e-258
Identity = 480/590 (81.36%), Postives = 486/590 (82.37%), Query Frame = 0


Query: 1    MPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELSGLPPHRE 60
            +PQVISAIRASKLLSQGTWGILASVVDTRE DVSLSSEPVVRDYPDVFPEEL GLPPHRE
Sbjct: 500  LPQVISAIRASKLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHRE 559

Query: 61   VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 120
            VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD
Sbjct: 560  VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 619

Query: 121  GLMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAIVFSRIDLRSGYHQLRIKDGDVPK 180
            G MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGA VFS+IDLRSGYHQLRIKD DVPK
Sbjct: 620  GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK 679

Query: 181  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVI----------------- 240
            TAFRSRYGHYEFIVMSFGLTNAP VFMDLMNRVFREFLDTFVI                 
Sbjct: 680  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 739

Query: 241  ----------------------------LSFLGHVVSKARVSLDPAKIEAVTSWTRPSTV 300
                                        +SFLGHVVSKA VS+DPAKIEAVT WTRPSTV
Sbjct: 740  EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTV 799

Query: 301  SEVRSFLGLA--------------------------------------------VTAPVL 360
            SEVRSFLGLA                                            VTAPVL
Sbjct: 800  SEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL 859

Query: 361  TVPDGFGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 420
            TVPDG GSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK
Sbjct: 860  TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 919

Query: 421  IWRHYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRLLELVKDYDCEILYHSGKANVVADA 480
            IWRHYLYGEKIQIFT+HKSLKYFFTQKELNMRQRR LELVKDYDCEILYH GKANVVADA
Sbjct: 920  IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA 979

Query: 481  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAATMQLAQLTVQPTLRQRIIDAQSNDPY 502
            LSRKVSHSAALITRQAPLHRDLERAEIAVSVGA TMQLAQLTVQPTLRQRIIDAQSNDPY
Sbjct: 980  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPY 1039

[Close]

BLAST of Cmc11g0304441 vs. NCBI nr
Match: KAA0037244.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 901.0 bits (2327), Expect = 4.8e-258
Identity = 479/590 (81.19%), Postives = 486/590 (82.37%), Query Frame = 0


Query: 1    MPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELSGLPPHRE 60
            +PQVISAIRASKLLSQGTWGILASVVDTREVDVSLS EPVVRDYPDVFPEEL GLPPHRE
Sbjct: 534  LPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSLEPVVRDYPDVFPEELPGLPPHRE 593

Query: 61   VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 120
            VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD
Sbjct: 594  VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 653

Query: 121  GLMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAIVFSRIDLRSGYHQLRIKDGDVPK 180
            G MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGA VFS+IDLRSGYHQLRIKD DVPK
Sbjct: 654  GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK 713

Query: 181  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVI----------------- 240
            TAFRSRYGHYEFIVMSFGLTNAP VFMDLMNRVFREFLDTFVI                 
Sbjct: 714  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHE 773

Query: 241  ----------------------------LSFLGHVVSKARVSLDPAKIEAVTSWTRPSTV 300
                                        +SFLGHVVSKA VS+DPAKIEAVT WTRPSTV
Sbjct: 774  EHLRMVLQTLRDNKLYAKFLKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTV 833

Query: 301  SEVRSFLGLA--------------------------------------------VTAPVL 360
            SEVRSFLGLA                                            VTAPVL
Sbjct: 834  SEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL 893

Query: 361  TVPDGFGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 420
            TVPDG GSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK
Sbjct: 894  TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 953

Query: 421  IWRHYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRLLELVKDYDCEILYHSGKANVVADA 480
            IWRHYLYGEKIQIFT+HKSLKYFFTQKELNMRQRR LELVKDYDCEILYH GKANVVADA
Sbjct: 954  IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA 1013

Query: 481  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAATMQLAQLTVQPTLRQRIIDAQSNDPY 502
            LSRKVSHSAALITRQAPLHRDLERAEIAVSVGA TMQLAQLTVQPTLRQRIIDAQSNDPY
Sbjct: 1014 LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPY 1073

[Close]

BLAST of Cmc11g0304441 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.0e-53
Identity = 130/411 (31.63%), Postives = 196/411 (47.69%), Query Frame = 0


Query: 79  YRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGL-----MRLCIDYRELN 138
           Y    A  +E++ Q+Q++L++G IR S SP+ +P+  V KK         R+ IDYR+LN
Sbjct: 213 YSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLN 272

Query: 139 KVTVKNRYPLPRIDDLFDQLQGAIVFSRIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFI 198
           ++TV +R+P+P +D++  +L     F+ IDL  G+HQ+ +    V KTAF +++GHYE++
Sbjct: 273 EITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYL 332

Query: 199 VMSFGLTNAPTVFMDLMNRVFRE--------FLDTFVILS-------------------- 258
            M FGL NAP  F   MN + R         +LD  ++ S                    
Sbjct: 333 RMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKA 392

Query: 259 -----------------FLGHVVSKARVSLDPAKIEAVTSWTRPSTVSEVRSFLGLA--- 318
                            FLGHV++   +  +P KIEA+  +  P+   E+++FLGL    
Sbjct: 393 NLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYY 452

Query: 319 ------------------------------------------VTAPVLTVPDGFGSFVIY 378
                                                        P+L VPD    F + 
Sbjct: 453 RKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLT 512

Query: 379 SDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQ 395
           +DAS   LG VL Q G  ++Y SR L  HE NY T + EL A+V+A K +RHYL G   +
Sbjct: 513 TDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFE 572

[Close]

BLAST of Cmc11g0304441 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 5.1e-53
Identity = 152/544 (27.94%), Postives = 243/544 (44.67%), Query Frame = 0


Query: 73  PISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD-----GLMRLCI 132
           PI    Y +A     E++ Q+QE+L++G IR S SP+ +P   V KK         R+ I
Sbjct: 206 PIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVI 265

Query: 133 DYRELNKVTVKNRYPLPRIDDLFDQLQGAIVFSRIDLRSGYHQLRIKDGDVPKTAFRSRY 192
           DYR+LN++T+ +RYP+P +D++  +L     F+ IDL  G+HQ+ + +  + KTAF ++ 
Sbjct: 266 DYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKS 325

Query: 193 GHYEFIVMSFGLTNAPTVFMDLMNRVFRE--------FLDTFVILS-------------- 252
           GHYE++ M FGL NAP  F   MN + R         +LD  +I S              
Sbjct: 326 GHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVF 385

Query: 253 -----------------------FLGHVVSKARVSLDPAKIEAVTSWTRPSTVSEVRSFL 312
                                  FLGH+V+   +  +P K++A+ S+  P+   E+R+FL
Sbjct: 386 TKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFL 445

Query: 313 GLA---------------------------------------------VTAPVLTVPDGF 372
           GL                                              +  P+L +PD  
Sbjct: 446 GLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFE 505

Query: 373 GSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYL 432
             FV+ +DAS   LG VL Q G  +++ SR L  HE NY   + EL A+V+A K +RHYL
Sbjct: 506 KKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYL 565

Query: 433 YGEKIQIFTNHKSLKYFFTQKELNMRQRRLLELVKDYDCEILYHSGKANVVADALSR-KV 492
            G +  I ++H+ L++    KE   +  R    + +Y  +I Y  GK N VADALSR K+
Sbjct: 566 LGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSRIKI 625

Query: 493 SHSAALITRQAPLHRDLERAEIAVSVGAATMQLAQLTVQPT--LRQRIIDAQSNDPYLDE 508
             +      Q     D                L  LT +P    +++II  +S+   ++ 
Sbjct: 626 EENHHSEATQHSAEED-------------NSNLIHLTEKPINYFKKQIIFIKSDKNKVEH 685

[Close]

BLAST of Cmc11g0304441 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 2.0e-49
Identity = 132/465 (28.39%), Postives = 216/465 (46.45%), Query Frame = 0


Query: 43  DYPDVFPEELSGLPPHREVEFAIELEPGT---VPISRAPYRMAPAELKELKVQLQELLDK 102
           ++P +F   LSG+     VE A++ E  T    PI    Y        E++ Q+ ELL  
Sbjct: 94  EFPRIFEPPLSGM----SVETAVKAEIRTNTQDPIYAKSYPYPVNMRGEVERQIDELLQD 153

Query: 103 GFIRPSVSPWGAPVLFVKKK-----DGLMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ 162
           G IRPS SP+ +P+  V KK     +   R+ +D++ LN VT+ + YP+P I+     L 
Sbjct: 154 GIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLASLG 213

Query: 163 GAIVFSRIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVF 222
            A  F+ +DL SG+HQ+ +K+ D+PKTAF +  G YEF+ + FGL NAP +F  +++ + 
Sbjct: 214 NAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDIL 273

Query: 223 RE--------FLDTFVILS-------------------------------------FLGH 282
           RE        ++D  ++ S                                     FLG+
Sbjct: 274 REHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGY 333

Query: 283 VVSKARVSLDPAKIEAVTSWTRPSTVSEVRSFLGLA------------------------ 342
           +V+   +  DP K+ A++    P++V E++ FLG+                         
Sbjct: 334 IVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGL 393

Query: 343 -------------------------------VTAPVLTVPDGFGSFVIYSDASKKGLGCV 395
                                           ++ +L  P     F + +DAS   +G V
Sbjct: 394 YANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAV 453

[Close]

BLAST of Cmc11g0304441 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 3.0e-45
Identity = 126/412 (30.58%), Postives = 190/412 (46.12%), Query Frame = 0


Query: 92  QLQELLDKGFIRPSVSPWGAPVLFVKKK------DGLMRLCIDYRELNKVTVKNRYPLPR 151
           ++++LL  G IRPS SP+ +P   V KK      +   RL ID+R+LN+ T+ +RYP+P 
Sbjct: 200 EVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYPMPS 259

Query: 152 IDDLFDQLQGAIVFSRIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPTV 211
           I  +   L  A  F+ +DL+SGYHQ+ + + D  KT+F    G YEF  + FGL NA ++
Sbjct: 260 IPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSI 319

Query: 212 FMDLMNRVFRE--------FLDTFVILS-------------------------------- 271
           F   ++ V RE        ++D  +I S                                
Sbjct: 320 FQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFF 379

Query: 272 -----FLGHVVSKARVSLDPAKIEAVTSWTRPSTVSEVRSFLGL------------AVTA 331
                +LG +VSK     DP K++A+  +  P  V +VRSFLGL            A+  
Sbjct: 380 KESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIAR 439

Query: 332 P--------------------------------------------VLTVPDGFGSFVIYS 391
           P                                            +L  PD    F + +
Sbjct: 440 PITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTT 499

Query: 392 DASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEK-IQ 396
           DAS  G+G VL Q+G+ +   SR LK  EQNY T++ EL A+V+AL   +++LYG + I 
Sbjct: 500 DASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREIN 559

[Close]

BLAST of Cmc11g0304441 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 7.4e-44
Identity = 141/561 (25.13%), Postives = 244/561 (43.49%), Query Frame = 0


Query: 40  VVRDYPDVFPE-ELSGLP-PHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELL 99
           + +++ D+  E     LP P + +EF +EL      +    Y + P +++ +  ++ + L
Sbjct: 377 IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGL 436

Query: 100 DKGFIRPSVSPWGAPVLFVKKKDGLMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAI 159
             G IR S +    PV+FV KK+G +R+ +DY+ LNK    N YPLP I+ L  ++QG+ 
Sbjct: 437 KSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGST 496

Query: 160 VFSRIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREF 219
           +F+++DL+S YH +R++ GD  K AFR   G +E++VM +G++ AP  F   +N +  E 
Sbjct: 497 IFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEA 556

Query: 220 LDTFVI---------------------------------------------LSFLGHVVS 279
            ++ V+                                             + F+G+ +S
Sbjct: 557 KESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHIS 616

Query: 280 KARVSLDPAKIEAVTSWTRPSTVSEVRSFLG----------------------------- 339
           +   +     I+ V  W +P    E+R FLG                             
Sbjct: 617 EKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRW 676

Query: 340 ---------------LAVTAPVLTVPDGFGSFVIYSDASKKGLGCVLMQQGK-----VVA 399
                            V+ PVL   D     ++ +DAS   +G VL Q+        V 
Sbjct: 677 KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736

Query: 400 YASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTNHKSLKYFFTQKE-- 459
           Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I T+H++L    T +   
Sbjct: 737 YYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEP 796

Query: 460 LNMRQRRLLELVKDYDCEILYHSGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIA 499
            N R  R    ++D++ EI Y  G AN +ADALSR       ++    P+ +D E   I 
Sbjct: 797 ENKRLARWQLFLQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNSIN 856

[Close]

BLAST of Cmc11g0304441 vs. ExPASy TrEMBL
Match: A0A5A7T0Y9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00570 PE=4 SV=1)

HSP 1 Score: 906.4 bits (2341), Expect = 5.5e-260
Identity = 479/567 (84.48%), Postives = 485/567 (85.54%), Query Frame = 0


Query: 1   MPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELSGLPPHRE 60
           +PQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEEL GLPPHRE
Sbjct: 387 LPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHRE 446

Query: 61  VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 120
           VEFAIELEP TVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD
Sbjct: 447 VEFAIELEPDTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 506

Query: 121 GLMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAIVFSRIDLRSGYHQLRIKDGDVPK 180
           G MRLCIDYRELNKVTVKNRYPLP IDDLFDQLQ A VFS+IDLRSGYHQLRIKDGDVPK
Sbjct: 507 GSMRLCIDYRELNKVTVKNRYPLPWIDDLFDQLQEATVFSKIDLRSGYHQLRIKDGDVPK 566

Query: 181 TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFV------------------ 240
           TAFRSRYGHYEFIVMSFGLTNAP VFMDLMNRVFREFLDTFV                  
Sbjct: 567 TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 626

Query: 241 ----ILSFLGHVVSKARVSLDPAKIEAVTSWTRPSTVSEVRSFLGLA------------- 300
               I+SFLGHVVSKA VS+DPAKIEAVT WTRPSTVSE RSFLGLA             
Sbjct: 627 EHLRIVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEFRSFLGLAGYYRRFVENFSHI 686

Query: 301 -------------------------------VTAPVLTVPDGFGSFVIYSDASKKGLGCV 360
                                          VTAPVLTVPDG GSFVIYSDASKKGLGCV
Sbjct: 687 ATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCV 746

Query: 361 LMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTNHKSLKYF 420
           LMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFT+HKSLKYF
Sbjct: 747 LMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYF 806

Query: 421 FTQKELNMRQRRLLELVKDYDCEILYHSGKANVVADALSRKVSHSAALITRQAPLHRDLE 480
           FTQKELNMRQRR LELVKDYDCEILYH GKANVVADALSRKVSHSAALITRQAPLHRDLE
Sbjct: 807 FTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLE 866

Query: 481 RAEIAVSVGAATMQLAQLTVQPTLRQRIIDAQSNDPYLDEKRGLAEAGQTVEFSISSDGG 502
           RAEIAVSVGA TMQLAQLTVQPTLRQRIIDAQSNDPYL EKRGLAEAGQ VEFS+SSDGG
Sbjct: 867 RAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGG 926

[Close]

BLAST of Cmc11g0304441 vs. ExPASy TrEMBL
Match: A0A5A7UTH9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold132G00530 PE=4 SV=1)

HSP 1 Score: 905.2 bits (2338), Expect = 1.2e-259
Identity = 479/590 (81.19%), Postives = 488/590 (82.71%), Query Frame = 0


Query: 1   MPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELSGLPPHRE 60
           +PQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYP+VFPEEL GLPPHRE
Sbjct: 232 LPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPNVFPEELPGLPPHRE 291

Query: 61  VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 120
           VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD
Sbjct: 292 VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 351

Query: 121 GLMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAIVFSRIDLRSGYHQLRIKDGDVPK 180
           G MRLCIDYRELNKVTVKNRYPLP+IDDLFDQLQGA VFS+IDLRSGYHQLRIKDGDVPK
Sbjct: 352 GSMRLCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK 411

Query: 181 TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIL---------------- 240
           TAFRSRYGHYEFIVMSFGLTNAP VFMDLMNRVFREFLDTFVI+                
Sbjct: 412 TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIMFIDDILIYSKTEAEHE 471

Query: 241 -----------------------------SFLGHVVSKARVSLDPAKIEAVTSWTRPSTV 300
                                        SFLGHVVSK RVS+DPAKIEAVT WTRPSTV
Sbjct: 472 EHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKVRVSVDPAKIEAVTGWTRPSTV 531

Query: 301 SEVRSFLGLA--------------------------------------------VTAPVL 360
           SEVRSFLGLA                                            VTAPVL
Sbjct: 532 SEVRSFLGLAGYYQRFGENFSRIATPLTQLTRKGAPFVWSKACEDSFQDLKQKLVTAPVL 591

Query: 361 TVPDGFGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 420
           TVPDG+GSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK
Sbjct: 592 TVPDGYGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 651

Query: 421 IWRHYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRLLELVKDYDCEILYHSGKANVVADA 480
           IWRHYLYGEKIQIFT+HKSLKYFFTQKELNMRQRR LELVKDYDCEILYH GKANVVADA
Sbjct: 652 IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA 711

Query: 481 LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAATMQLAQLTVQPTLRQRIIDAQSNDPY 502
           LSRKVSHSAALITRQAPLHRDLERAEIAVSVGA TMQLAQLTVQPTLRQRIIDAQ NDPY
Sbjct: 712 LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQGNDPY 771

[Close]

BLAST of Cmc11g0304441 vs. ExPASy TrEMBL
Match: A0A5D3BPI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002120 PE=4 SV=1)

HSP 1 Score: 904.0 bits (2335), Expect = 2.8e-259
Identity = 481/590 (81.53%), Postives = 487/590 (82.54%), Query Frame = 0


Query: 1    MPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELSGLPPHRE 60
            +PQVISAIRASKLLSQGTWGILASVVDTRE DVSLSSEPVVRDYPDVFPEEL GLPPHRE
Sbjct: 754  LPQVISAIRASKLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHRE 813

Query: 61   VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 120
            VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD
Sbjct: 814  VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 873

Query: 121  GLMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAIVFSRIDLRSGYHQLRIKDGDVPK 180
            G MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGA VFS+IDLRSGYHQLRIKD DVPK
Sbjct: 874  GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK 933

Query: 181  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVI----------------- 240
            TAFRSRYGHYEFIVMSFGLTNAP VFMDLMNRVFREFLDTFVI                 
Sbjct: 934  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 993

Query: 241  ----------------------------LSFLGHVVSKARVSLDPAKIEAVTSWTRPSTV 300
                                        +SFLGHVVSKA VS+DPAKIEAVT WTRPSTV
Sbjct: 994  EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTV 1053

Query: 301  SEVRSFLGLA--------------------------------------------VTAPVL 360
            SEVRSFLGLA                                            VTAPVL
Sbjct: 1054 SEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVL 1113

Query: 361  TVPDGFGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 420
            TVPDG GSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK
Sbjct: 1114 TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 1173

Query: 421  IWRHYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRLLELVKDYDCEILYHSGKANVVADA 480
            IWRHYLYGEKIQIFT+HKSLKYFFTQKELNMRQRR LELVKDYDCEILYH GKANVVADA
Sbjct: 1174 IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA 1233

Query: 481  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAATMQLAQLTVQPTLRQRIIDAQSNDPY 502
            LSRKVSHSAALITRQAPLHRDLERAEIAVSVGA TMQLAQLTVQPTLRQRIIDAQSNDPY
Sbjct: 1234 LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPY 1293

[Close]

BLAST of Cmc11g0304441 vs. ExPASy TrEMBL
Match: A0A5A7U330 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G00040 PE=4 SV=1)

HSP 1 Score: 902.1 bits (2330), Expect = 1.0e-258
Identity = 480/590 (81.36%), Postives = 486/590 (82.37%), Query Frame = 0


Query: 1    MPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELSGLPPHRE 60
            +PQVISAIRASKLLSQGTWGILASVVDTRE DVSLSSEPVVRDYPDVFPEEL GLPPHRE
Sbjct: 500  LPQVISAIRASKLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHRE 559

Query: 61   VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 120
            VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD
Sbjct: 560  VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 619

Query: 121  GLMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAIVFSRIDLRSGYHQLRIKDGDVPK 180
            G MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGA VFS+IDLRSGYHQLRIKD DVPK
Sbjct: 620  GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK 679

Query: 181  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVI----------------- 240
            TAFRSRYGHYEFIVMSFGLTNAP VFMDLMNRVFREFLDTFVI                 
Sbjct: 680  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 739

Query: 241  ----------------------------LSFLGHVVSKARVSLDPAKIEAVTSWTRPSTV 300
                                        +SFLGHVVSKA VS+DPAKIEAVT WTRPSTV
Sbjct: 740  EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTV 799

Query: 301  SEVRSFLGLA--------------------------------------------VTAPVL 360
            SEVRSFLGLA                                            VTAPVL
Sbjct: 800  SEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL 859

Query: 361  TVPDGFGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 420
            TVPDG GSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK
Sbjct: 860  TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 919

Query: 421  IWRHYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRLLELVKDYDCEILYHSGKANVVADA 480
            IWRHYLYGEKIQIFT+HKSLKYFFTQKELNMRQRR LELVKDYDCEILYH GKANVVADA
Sbjct: 920  IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA 979

Query: 481  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAATMQLAQLTVQPTLRQRIIDAQSNDPY 502
            LSRKVSHSAALITRQAPLHRDLERAEIAVSVGA TMQLAQLTVQPTLRQRIIDAQSNDPY
Sbjct: 980  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPY 1039

[Close]

BLAST of Cmc11g0304441 vs. ExPASy TrEMBL
Match: A0A5A7T190 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G001700 PE=4 SV=1)

HSP 1 Score: 901.0 bits (2327), Expect = 2.3e-258
Identity = 479/590 (81.19%), Postives = 486/590 (82.37%), Query Frame = 0


Query: 1    MPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELSGLPPHRE 60
            +PQVISAIRASKLLSQGTWGILASVVDTREVDVSLS EPVVRDYPDVFPEEL GLPPHRE
Sbjct: 534  LPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSLEPVVRDYPDVFPEELPGLPPHRE 593

Query: 61   VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 120
            VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD
Sbjct: 594  VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 653

Query: 121  GLMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAIVFSRIDLRSGYHQLRIKDGDVPK 180
            G MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGA VFS+IDLRSGYHQLRIKD DVPK
Sbjct: 654  GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK 713

Query: 181  TAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVI----------------- 240
            TAFRSRYGHYEFIVMSFGLTNAP VFMDLMNRVFREFLDTFVI                 
Sbjct: 714  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHE 773

Query: 241  ----------------------------LSFLGHVVSKARVSLDPAKIEAVTSWTRPSTV 300
                                        +SFLGHVVSKA VS+DPAKIEAVT WTRPSTV
Sbjct: 774  EHLRMVLQTLRDNKLYAKFLKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTV 833

Query: 301  SEVRSFLGLA--------------------------------------------VTAPVL 360
            SEVRSFLGLA                                            VTAPVL
Sbjct: 834  SEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL 893

Query: 361  TVPDGFGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 420
            TVPDG GSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK
Sbjct: 894  TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 953

Query: 421  IWRHYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRLLELVKDYDCEILYHSGKANVVADA 480
            IWRHYLYGEKIQIFT+HKSLKYFFTQKELNMRQRR LELVKDYDCEILYH GKANVVADA
Sbjct: 954  IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA 1013

Query: 481  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAATMQLAQLTVQPTLRQRIIDAQSNDPY 502
            LSRKVSHSAALITRQAPLHRDLERAEIAVSVGA TMQLAQLTVQPTLRQRIIDAQSNDPY
Sbjct: 1014 LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPY 1073

[Close]

BLAST of Cmc11g0304441 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 2.0e-04
Identity = 20/43 (46.51%), Postives = 29/43 (67.44%), Query Frame = 0


Query: 224 LSFLG--HVVSKARVSLDPAKIEAVTSWTRPSTVSEVRSFLGL 265
           +++LG  H++S   VS DPAK+EA+  W  P   +E+R FLGL
Sbjct: 30  IAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGL 72

The following BLAST results are available for this feature:

BLAST of Cmc11g0304441 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036553.1	1.1e-259	84.48	pol protein [Cucumis melo var. makuwa]	[more]
KAA0058464.1	2.6e-259	81.19	pol protein [Cucumis melo var. makuwa]	[more]
TYK01613.1	5.7e-259	81.53	pol protein [Cucumis melo var. makuwa]	[more]
KAA0048687.1	2.2e-258	81.36	pol protein [Cucumis melo var. makuwa]	[more]
KAA0037244.1	4.8e-258	81.19	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0304441 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	3.0e-53	31.63	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	5.1e-53	27.94	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	2.0e-49	28.39	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	3.0e-45	30.58	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P0CT41	7.4e-44	25.13	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc11g0304441 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T0Y9	5.5e-260	84.48	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19...	[more]
A0A5A7UTH9	1.2e-259	81.19	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5D3BPI1	2.8e-259	81.53	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5A7U330	1.0e-258	81.36	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5A7T190	2.3e-258	81.19	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37...	[more]

BLAST of Cmc11g0304441 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	2.0e-04	46.51	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.370		coord: 278..345 e-value: 1.6E-8 score: 36.4
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 62..201 e-value: 4.6E-64 score: 217.6
None	No IPR available	PANTHER	PTHR24559:SF383	DNA/RNA POLYMERASES SUPERFAMILY PROTEIN	coord: 3..185
None	No IPR available	PANTHER	PTHR24559:SF383	DNA/RNA POLYMERASES SUPERFAMILY PROTEIN	coord: 223..410 coord: 338..401
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 223..410 coord: 3..185 coord: 338..401
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 281..396 e-value: 1.31297E-55 score: 179.996
None	No IPR available	CDD	cd01647	RT_LTR	coord: 100..223 e-value: 1.02389E-60 score: 195.507
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 279..374 e-value: 2.8E-31 score: 107.9
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 116..220 e-value: 1.5E-10 score: 40.9
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 141..222 e-value: 4.6E-64 score: 217.6
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 40..380

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0304441.1	Cmc11g0304441.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding