Cmc11g0304351 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0304351
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 25873047 .. 25873655 (+)
RNA-Seq Expression	Cmc11g0304351
Synteny	Cmc11g0304351

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATTCGGTTTAACGAATGCGCCAGCAGTTTTCATGGATCTCATGAACAAGATCTTCCATCAGTATCTAGATCAGTTTGTGATTGTGTTCACTGATGATATATTAGTTTACTCGGTTGACAGAGAATCCCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACATGATAAACAGTTGTACGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAAGAAGTAGTATTTTTGGGACATATAGTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTAGAAGCGATTGTCAATTGGGAAAGACCAACTAGTGCGACAGAAGTACGTAGTTGCTTGGGTTTCAAAGGATACTATAGGCGTTTTATTGAGGATTTCGCTCGATTGGCATTGCCTTTTACCGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGGAATTGAAGAAAAGACTAGTCATAGTACCTATTTTGGCACTTCCTGTAACAGGGAAGGACTATGTGATTTATTGTGATGCTTCAAGGCTAGGATTAGGTTGTGTGCTTATGCAAGATGGGAATGTAATAGCTTATGCTTCAAGGTAG

mRNA sequence

ATGTCATTCGGTTTAACGAATGCGCCAGCAGTTTTCATGGATCTCATGAACAAGATCTTCCATCAGTATCTAGATCAGTTTGTGATTGTGTTCACTGATGATATATTAGTTTACTCGGTTGACAGAGAATCCCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACATGATAAACAGTTGTACGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAAGAAGTAGTATTTTTGGGACATATAGTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTAGAAGCGATTGTCAATTGGGAAAGACCAACTAGTGCGACAGAAGTACGTAGTTGCTTGGGTTTCAAAGGATACTATAGGCGTTTTATTGAGGATTTCGCTCGATTGGCATTGCCTTTTACCGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGGAATTGAAGAAAAGACTAGTCATAGTACCTATTTTGGCACTTCCTGTAACAGGGAAGGACTATGTGATTTATTGTGATGCTTCAAGGCTAGGATTAGGTTGTGTGCTTATGCAAGATGGGAATGTAATAGCTTATGCTTCAAGGTAG

Coding sequence (CDS)

ATGTCATTCGGTTTAACGAATGCGCCAGCAGTTTTCATGGATCTCATGAACAAGATCTTCCATCAGTATCTAGATCAGTTTGTGATTGTGTTCACTGATGATATATTAGTTTACTCGGTTGACAGAGAATCCCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACATGATAAACAGTTGTACGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAAGAAGTAGTATTTTTGGGACATATAGTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTAGAAGCGATTGTCAATTGGGAAAGACCAACTAGTGCGACAGAAGTACGTAGTTGCTTGGGTTTCAAAGGATACTATAGGCGTTTTATTGAGGATTTCGCTCGATTGGCATTGCCTTTTACCGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGGAATTGAAGAAAAGACTAGTCATAGTACCTATTTTGGCACTTCCTGTAACAGGGAAGGACTATGTGATTTATTGTGATGCTTCAAGGCTAGGATTAGGTTGTGTGCTTATGCAAGATGGGAATGTAATAGCTTATGCTTCAAGGTAG

Protein sequence

MSFGLTNAPAVFMDLMNKIFHQYLDQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASR

Homology

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BLAST of Cmc11g0304351 vs. NCBI nr
Match: KAA0053222.1 (hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 387.9 bits (995), Expect = 5.4e-104
Identity = 189/202 (93.56%), Postives = 194/202 (96.04%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLDQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           MSFGLTNAPAVFMDLMN+IFHQYLDQFVIVF DDILVYSVDRESHEEHLRIVLQTL DKQ
Sbjct: 662 MSFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 721

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           LYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNWERPTSATEVRS LG  GYYR
Sbjct: 722 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 781

Query: 121 RFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALPVTGKDYVIYCD 180
           RFIEDF+RLALP TALTRKNAKFEWSDKCEQSFQELKKRLV  PILALPVTGKDYVIYCD
Sbjct: 782 RFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 841

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 842 ASRLGLGCVLMQDGNVIAYASR 863

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BLAST of Cmc11g0304351 vs. NCBI nr
Match: KAA0050493.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 379.0 bits (972), Expect = 2.5e-101
Identity = 184/202 (91.09%), Postives = 191/202 (94.55%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLDQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           M FGLTNAPAVFMDLMN+IFH+YLDQFVIVF DDILVYSVDRESHEEHLRIVLQTL +KQ
Sbjct: 333 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 392

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           LYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNWERP SATEVRS LG  GYYR
Sbjct: 393 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 452

Query: 121 RFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALPVTGKDYVIYCD 180
           RFIEDF+RLALP TALTRKN KFEWSDKCEQSFQELKKRLV  PILALPVTGKDYVIYCD
Sbjct: 453 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 512

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 513 ASRLGLGCVLMQDGNVIAYASR 534

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BLAST of Cmc11g0304351 vs. NCBI nr
Match: KAA0050527.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 379.0 bits (972), Expect = 2.5e-101
Identity = 184/202 (91.09%), Postives = 191/202 (94.55%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLDQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           M FGLTNAPAVFMDLMN+IFH+YLDQFVIVF DDILVYSVDRESHEEHLRIVLQTL +KQ
Sbjct: 440 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 499

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           LYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNWERP SATEVRS LG  GYYR
Sbjct: 500 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 559

Query: 121 RFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALPVTGKDYVIYCD 180
           RFIEDF+RLALP TALTRKN KFEWSDKCEQSFQELKKRLV  PILALPVTGKDYVIYCD
Sbjct: 560 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 619

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 620 ASRLGLGCVLMQDGNVIAYASR 641

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BLAST of Cmc11g0304351 vs. NCBI nr
Match: KAA0066849.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 379.0 bits (972), Expect = 2.5e-101
Identity = 184/202 (91.09%), Postives = 191/202 (94.55%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLDQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           M FGLTNAPAVFMDLMN+IFH+YLDQFVIVF DDILVYSVDRESHEEHLRIVLQTL +KQ
Sbjct: 779 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 838

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           LYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNWERP SATEVRS LG  GYYR
Sbjct: 839 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 898

Query: 121 RFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALPVTGKDYVIYCD 180
           RFIEDF+RLALP TALTRKN KFEWSDKCEQSFQELKKRLV  PILALPVTGKDYVIYCD
Sbjct: 899 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 958

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 959 ASRLGLGCVLMQDGNVIAYASR 980

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BLAST of Cmc11g0304351 vs. NCBI nr
Match: KAA0035455.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >KAA0046782.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK01987.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK03719.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK25877.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 379.0 bits (972), Expect = 2.5e-101
Identity = 184/202 (91.09%), Postives = 191/202 (94.55%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLDQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           M FGLTNAPAVFMDLMN+IFH+YLDQFVIVF DDILVYSVDRESHEEHLRIVLQTL +KQ
Sbjct: 779 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 838

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           LYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNWERP SATEVRS LG  GYYR
Sbjct: 839 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 898

Query: 121 RFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALPVTGKDYVIYCD 180
           RFIEDF+RLALP TALTRKN KFEWSDKCEQSFQELKKRLV  PILALPVTGKDYVIYCD
Sbjct: 899 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 958

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 959 ASRLGLGCVLMQDGNVIAYASR 980

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BLAST of Cmc11g0304351 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 9.1e-38
Identity = 84/204 (41.18%), Postives = 124/204 (60.78%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLDQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           M FGL NAPA F   MN I    L++  +V+ DDI+++S     H   +++V   L D  
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           L  +  KCEF  +E  FLGHIV+  G+  +P KV+AIV++  PT   E+R+ LG  GYYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFIEDFARLALPFTALTRKNAKFEWSDKCE--QSFQELKKRLVIVPILALPVTGKDYVIY 180
           +FI ++A +A P T+  +K  K + + K E  ++F++LK  ++  PIL LP   K +V+ 
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKID-TQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLT 512

Query: 181 CDASRLGLGCVLMQDGNVIAYASR 203
            DAS L LG VL Q+G+ I++ SR
Sbjct: 513 TDASNLALGAVLSQNGHPISFISR 535

[Close]

BLAST of Cmc11g0304351 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.5e-37
Identity = 79/203 (38.92%), Postives = 122/203 (60.10%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLDQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           M FGL NAPA F   MN I    L++  +V+ DDI+V+S   + H + L +V + L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           L  +  KCEF  +E  FLGH+++  G+  +P+K+EAI  +  PT   E+++ LG  GYYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFIEDFARLALPFTALTRKNAKFEWSD-KCEQSFQELKKRLVIVPILALPVTGKDYVIYC 180
           +FI +FA +A P T   +KN K + ++ + + +F++LK  +   PIL +P   K + +  
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513

Query: 181 DASRLGLGCVLMQDGNVIAYASR 203
           DAS + LG VL QDG+ ++Y SR
Sbjct: 514 DASDVALGAVLSQDGHPLSYISR 536

[Close]

BLAST of Cmc11g0304351 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.0e-33
Identity = 86/217 (39.63%), Postives = 120/217 (55.30%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLDQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           + FGL NAPA+F  +++ I  +++ +   V+ DDI+V+S D ++H ++LR+VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           L     K  F   +V FLG+IV+A G+  DP+KV AI     PTS  E++  LG   YYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFIEDFARLALPFTALTR---KNAKFEWSDKCE--------QSFQELKKRLVIVPILALP 180
           +FI+D+A++A P T LTR    N K   S K          QSF +LK  L    ILA P
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFP 429

Query: 181 VTGKDYVIYCDASRLGLGCVLMQD----GNVIAYASR 203
              K + +  DAS   +G VL QD       IAY SR
Sbjct: 430 CFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISR 466

[Close]

BLAST of Cmc11g0304351 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.1e-27
Identity = 71/206 (34.47%), Postives = 106/206 (51.46%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLDQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           + FGL  AP  F  +M   F         ++ DD++V     +   ++L  V     +  
Sbjct: 442 LPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYN 501

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           L     KC F++ EV FLGH  + KG+  D +K + I N+  P  A   R  + F  YYR
Sbjct: 502 LKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYR 561

Query: 121 RFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALPVTGKDYVIYCD 180
           RFI++FA  +   T L +KN  FEW+D+C+++F  LK +L+   +L  P   K++ I  D
Sbjct: 562 RFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTD 621

Query: 181 ASRLGLGCVLMQDGN----VIAYASR 203
           AS+   G VL Q+ N     +AYASR
Sbjct: 622 ASKQACGAVLTQNHNGHQLPVAYASR 647

[Close]

BLAST of Cmc11g0304351 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.3e-27
Identity = 71/214 (33.18%), Postives = 108/214 (50.47%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLDQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           + FGL NA ++F   ++ +  + + +   V+ DD++++S +   H  H+  VL+ L D  
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           +     K  F+ E V +LG IVS  G   DP+KV+AI  +  P    +VRS LG   YYR
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428

Query: 121 RFIEDFARLALPFTALTR-----------KNAKFEWSDKCEQSFQELKKRLVIVP-ILAL 180
            FI+DFA +A P T + +           K    E+++    +FQ L+  L     IL  
Sbjct: 429 VFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKY 488

Query: 181 PVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASR 203
           P   K + +  DAS  G+G VL Q+G  I   SR
Sbjct: 489 PDFKKPFDLTTDASASGIGAVLSQEGRPITMISR 522

[Close]

BLAST of Cmc11g0304351 vs. ExPASy TrEMBL
Match: A0A5A7UBV9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00060 PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 2.6e-104
Identity = 189/202 (93.56%), Postives = 194/202 (96.04%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLDQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           MSFGLTNAPAVFMDLMN+IFHQYLDQFVIVF DDILVYSVDRESHEEHLRIVLQTL DKQ
Sbjct: 662 MSFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 721

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           LYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNWERPTSATEVRS LG  GYYR
Sbjct: 722 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 781

Query: 121 RFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALPVTGKDYVIYCD 180
           RFIEDF+RLALP TALTRKNAKFEWSDKCEQSFQELKKRLV  PILALPVTGKDYVIYCD
Sbjct: 782 RFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 841

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 842 ASRLGLGCVLMQDGNVIAYASR 863

[Close]

BLAST of Cmc11g0304351 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.2e-101
Identity = 184/202 (91.09%), Postives = 191/202 (94.55%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLDQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           M FGLTNAPAVFMDLMN+IFH+YLDQFVIVF DDILVYSVDRESHEEHLRIVLQTL +KQ
Sbjct: 741 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 800

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           LYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNWERP SATEVRS LG  GYYR
Sbjct: 801 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 860

Query: 121 RFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALPVTGKDYVIYCD 180
           RFIEDF+RLALP TALTRKN KFEWSDKCEQSFQELKKRLV  PILALPVTGKDYVIYCD
Sbjct: 861 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 920

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 921 ASRLGLGCVLMQDGNVIAYASR 942

[Close]

BLAST of Cmc11g0304351 vs. ExPASy TrEMBL
Match: A0A5D3BHI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00450 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.2e-101
Identity = 184/202 (91.09%), Postives = 191/202 (94.55%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLDQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           M FGLTNAPAVFMDLMN+IFH+YLDQFVIVF DDILVYSVDRESHEEHLRIVLQTL +KQ
Sbjct: 779 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 838

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           LYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNWERP SATEVRS LG  GYYR
Sbjct: 839 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 898

Query: 121 RFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALPVTGKDYVIYCD 180
           RFIEDF+RLALP TALTRKN KFEWSDKCEQSFQELKKRLV  PILALPVTGKDYVIYCD
Sbjct: 899 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 958

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 959 ASRLGLGCVLMQDGNVIAYASR 980

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BLAST of Cmc11g0304351 vs. ExPASy TrEMBL
Match: A0A5A7T1Y5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00980 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.2e-101
Identity = 184/202 (91.09%), Postives = 191/202 (94.55%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLDQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           M FGLTNAPAVFMDLMN+IFH+YLDQFVIVF DDILVYSVDRESHEEHLRIVLQTL +KQ
Sbjct: 779 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 838

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           LYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNWERP SATEVRS LG  GYYR
Sbjct: 839 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 898

Query: 121 RFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALPVTGKDYVIYCD 180
           RFIEDF+RLALP TALTRKN KFEWSDKCEQSFQELKKRLV  PILALPVTGKDYVIYCD
Sbjct: 899 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 958

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 959 ASRLGLGCVLMQDGNVIAYASR 980

[Close]

BLAST of Cmc11g0304351 vs. ExPASy TrEMBL
Match: A0A5A7UUL6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold132G00090 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.2e-101
Identity = 184/202 (91.09%), Postives = 191/202 (94.55%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNKIFHQYLDQFVIVFTDDILVYSVDRESHEEHLRIVLQTLHDKQ 60
           M FGLTNAPAVFMDLMN+IFH+YLDQFVIVF DDILVYSVDRESHEEHLRIVLQTL +KQ
Sbjct: 411 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 470

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           LYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNWERP SATEVRS LG  GYYR
Sbjct: 471 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 530

Query: 121 RFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALPVTGKDYVIYCD 180
           RFIEDF+RLALP TALTRKN KFEWSDKCEQSFQELKKRLV  PILALPVTGKDYVIYCD
Sbjct: 531 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 590

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 591 ASRLGLGCVLMQDGNVIAYASR 612

[Close]

BLAST of Cmc11g0304351 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 112.5 bits (280), Expect = 4.1e-25
Identity = 52/124 (41.94%), Postives = 78/124 (62.90%), Query Frame = 0


Query: 48  HLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLG--HIVSAKGVSVDPQKVEAIVNWERPTS 107
           HL +VLQ     Q YA   KC F   ++ +LG  HI+S +GVS DP K+EA+V W  P +
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 ATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPI 167
            TE+R  LG  GYYRRF++++ ++  P T L +KN+  +W++    +F+ LK  +  +P+
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 168 LALP 170
           LALP
Sbjct: 123 LALP 125

The following BLAST results are available for this feature:

BLAST of Cmc11g0304351 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053222.1	5.4e-104	93.56	hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa]	[more]
KAA0050493.1	2.5e-101	91.09	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0050527.1	2.5e-101	91.09	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0066849.1	2.5e-101	91.09	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0035455.1	2.5e-101	91.09	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >KAA0046782.1...	[more]

BLAST of Cmc11g0304351 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	9.1e-38	41.18	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	3.5e-37	38.92	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	1.0e-33	39.63	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10394	1.1e-27	34.47	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]
P10401	4.3e-27	33.18	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]

BLAST of Cmc11g0304351 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UBV9	2.6e-104	93.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U2V7	1.2e-101	91.09	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5D3BHI1	1.2e-101	91.09	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T1Y5	1.2e-101	91.09	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold43...	[more]
A0A5A7UUL6	1.2e-101	91.09	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]

BLAST of Cmc11g0304351 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	4.1e-25	41.94	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..87 e-value: 2.9E-31 score: 110.1
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..176 e-value: 2.5E-28 score: 99.9
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 145..202 e-value: 1.0E-14 score: 54.3
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..81 e-value: 1.5E-14 score: 54.0
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..82 score: 10.003062
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 80..202
None	No IPR available	PANTHER	PTHR24559:SF355	PROTEIN, PUTATIVE-RELATED	coord: 80..202
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 3.84999E-36 score: 122.704
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0304351.1	Cmc11g0304351.1	mRNA