Cmc11g0304201 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0304201
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 25762120 .. 25762551 (+)
RNA-Seq Expression	Cmc11g0304201
Synteny	Cmc11g0304201

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTCTATGTATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAATTACAGGGAGCCACAGTGATCTCTAAGATTGATCTTCGGTCGGGATACCATCAGCTGAGGAGTAAGGATGGTGATGTACCGAAGACAGCATTTCGTTCCAGATATGGACACTACGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCCCCGACAGTGTTTATGGACTTAATGAACAGAGTTTTTAGGGAGTTCCTAGATACTTTTGTGATCGTGTTTATTGATGATATCTTAATATACTCCAAGACGGAGGCCGAACATGAGGAGCATTTACGTATAGTTTTGCAAACACTTCGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGGAGTTTTGGCTGA

mRNA sequence

ATGCGTCTATGTATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAATTACAGGGAGCCACAGTGATCTCTAAGATTGATCTTCGGTCGGGATACCATCAGCTGAGGAGTAAGGATGGTGATGTACCGAAGACAGCATTTCGTTCCAGATATGGACACTACGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCCCCGACAGTGTTTATGGACTTAATGAACAGAGTTTTTAGGGAGTTCCTAGATACTTTTGTGATCGTGTTTATTGATGATATCTTAATATACTCCAAGACGGAGGCCGAACATGAGGAGCATTTACGTATAGTTTTGCAAACACTTCGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGGAGTTTTGGCTGA

Coding sequence (CDS)

ATGCGTCTATGTATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAATTACAGGGAGCCACAGTGATCTCTAAGATTGATCTTCGGTCGGGATACCATCAGCTGAGGAGTAAGGATGGTGATGTACCGAAGACAGCATTTCGTTCCAGATATGGACACTACGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCCCCGACAGTGTTTATGGACTTAATGAACAGAGTTTTTAGGGAGTTCCTAGATACTTTTGTGATCGTGTTTATTGATGATATCTTAATATACTCCAAGACGGAGGCCGAACATGAGGAGCATTTACGTATAGTTTTGCAAACACTTCGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGGAGTTTTGGCTGA

Protein sequence

MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVISKIDLRSGYHQLRSKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKWSFG

Homology

[Close]

BLAST of Cmc11g0304201 vs. NCBI nr
Match: KAA0040402.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 279.6 bits (714), Expect = 1.5e-71
Identity = 138/142 (97.18%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVISKIDLRSGYHQLRSKDGDVPKTA 60
           MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATV SKIDLRSGYHQLR KDGDVPKTA
Sbjct: 376 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 435

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120
           FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH
Sbjct: 436 FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 495

Query: 121 LRIVLQTLRDNKLYAKFSKWSF 143
           LRIVLQTLRDNKLYAKFSK  F
Sbjct: 496 LRIVLQTLRDNKLYAKFSKCEF 517

[Close]

BLAST of Cmc11g0304201 vs. NCBI nr
Match: KAA0025469.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 278.5 bits (711), Expect = 3.3e-71
Identity = 137/142 (96.48%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVISKIDLRSGYHQLRSKDGDVPKTA 60
           MRLCIDYRELNKVTVKN+YPLPRIDDLFDQLQGATV SKIDLRSGYHQLR KDGDVPKTA
Sbjct: 641 MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 700

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120
           FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH
Sbjct: 701 FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 760

Query: 121 LRIVLQTLRDNKLYAKFSKWSF 143
           LRIVLQTLRDNKLYAKFSK  F
Sbjct: 761 LRIVLQTLRDNKLYAKFSKCEF 782

[Close]

BLAST of Cmc11g0304201 vs. NCBI nr
Match: KAA0065935.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 278.1 bits (710), Expect = 4.3e-71
Identity = 136/142 (95.77%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVISKIDLRSGYHQLRSKDGDVPKTA 60
           MRLCIDYRELNKVTVKN+YPLPRIDDLFDQLQGATV SKIDLRSGYHQLR KDGDVPKTA
Sbjct: 196 MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 255

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120
           FRSRYGHYEFIVMSFGLTNAP VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH
Sbjct: 256 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 315

Query: 121 LRIVLQTLRDNKLYAKFSKWSF 143
           LRIVLQTLRDNKLYAKFSK+ F
Sbjct: 316 LRIVLQTLRDNKLYAKFSKYEF 337

[Close]

BLAST of Cmc11g0304201 vs. NCBI nr
Match: KAA0033251.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 278.1 bits (710), Expect = 4.3e-71
Identity = 137/142 (96.48%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVISKIDLRSGYHQLRSKDGDVPKTA 60
           MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATV SKIDLRSGYHQLR KDGDVPKTA
Sbjct: 388 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 447

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120
           FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH+EH
Sbjct: 448 FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEH 507

Query: 121 LRIVLQTLRDNKLYAKFSKWSF 143
           LRIVLQTLRDNKLYAKFSK  F
Sbjct: 508 LRIVLQTLRDNKLYAKFSKCEF 529

[Close]

BLAST of Cmc11g0304201 vs. NCBI nr
Match: KAA0026271.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 277.7 bits (709), Expect = 5.6e-71
Identity = 137/142 (96.48%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVISKIDLRSGYHQLRSKDGDVPKTA 60
           MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATV SKIDLRSGYHQLR KDGDVPKTA
Sbjct: 191 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 250

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120
           FRSRYGHYEFIVMSFGLTNAP VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH
Sbjct: 251 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 310

Query: 121 LRIVLQTLRDNKLYAKFSKWSF 143
           LRIVLQTLRDNKLYAKFSK  F
Sbjct: 311 LRIVLQTLRDNKLYAKFSKCEF 332

[Close]

BLAST of Cmc11g0304201 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.5e-36
Identity = 73/130 (56.15%), Postives = 97/130 (74.62%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVISKIDLRSGYHQLRSKDGDVPKTA 60
           +R+CIDYR L KVT+KN+YP+PR+DDLFD+L  AT  +K+DLRSGY Q+R   GD PKT 
Sbjct: 6   LRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTT 65

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDIL---IYSKTEAEH 120
             +RYG +EF VM FGLTNA   F +LMN V  E+LD FV+V++DD++   IYS +  EH
Sbjct: 66  CVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHEH 125

Query: 121 EEHLRIVLQT 128
            +HLR+V ++
Sbjct: 126 IKHLRVVRES 135

[Close]

BLAST of Cmc11g0304201 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 129.4 bits (324), Expect = 3.2e-29
Identity = 65/141 (46.10%), Postives = 90/141 (63.83%), Query Frame = 0


Query: 2   RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVISKIDLRSGYHQLRSKDGDVPKTAF 61
           RLC+DYR LNK T+ + +PLPRID+L  ++  A + + +DL SGYHQ+  +  D  KTAF
Sbjct: 647 RLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAF 706

Query: 62  RSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHL 121
            +  G YE+ VM FGL NAP+ F   M   FR+    FV V++DDILI+S++  EH +HL
Sbjct: 707 VTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHL 766

Query: 122 RIVLQTLRDNKLYAKFSKWSF 143
             VL+ L++  L  K  K  F
Sbjct: 767 DTVLERLKNENLIVKKKKCKF 785

[Close]

BLAST of Cmc11g0304201 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 129.4 bits (324), Expect = 3.2e-29
Identity = 65/141 (46.10%), Postives = 90/141 (63.83%), Query Frame = 0


Query: 2   RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVISKIDLRSGYHQLRSKDGDVPKTAF 61
           RLC+DYR LNK T+ + +PLPRID+L  ++  A + + +DL SGYHQ+  +  D  KTAF
Sbjct: 673 RLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAF 732

Query: 62  RSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHL 121
            +  G YE+ VM FGL NAP+ F   M   FR+    FV V++DDILI+S++  EH +HL
Sbjct: 733 VTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHL 792

Query: 122 RIVLQTLRDNKLYAKFSKWSF 143
             VL+ L++  L  K  K  F
Sbjct: 793 DTVLERLKNENLIVKKKKCKF 811

[Close]

BLAST of Cmc11g0304201 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.6e-28
Identity = 58/142 (40.85%), Postives = 94/142 (66.20%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVISKIDLRSGYHQLRSKDGDVPKTA 60
           +R+ +DY+ LNK    N YPLP I+ L  ++QG+T+ +K+DL+S YH +R + GD  K A
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120
           FR   G +E++VM +G++ AP  F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H
Sbjct: 522 FRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581

Query: 121 LRIVLQTLRDNKLYAKFSKWSF 143
           ++ VLQ L++  L    +K  F
Sbjct: 582 VKDVLQKLKNANLIINQAKCEF 603

[Close]

BLAST of Cmc11g0304201 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.6e-28
Identity = 58/142 (40.85%), Postives = 94/142 (66.20%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVISKIDLRSGYHQLRSKDGDVPKTA 60
           +R+ +DY+ LNK    N YPLP I+ L  ++QG+T+ +K+DL+S YH +R + GD  K A
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120
           FR   G +E++VM +G++ AP  F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H
Sbjct: 522 FRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581

Query: 121 LRIVLQTLRDNKLYAKFSKWSF 143
           ++ VLQ L++  L    +K  F
Sbjct: 582 VKDVLQKLKNANLIINQAKCEF 603

[Close]

BLAST of Cmc11g0304201 vs. ExPASy TrEMBL
Match: A0A5A7TAB9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00160 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 7.1e-72
Identity = 138/142 (97.18%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVISKIDLRSGYHQLRSKDGDVPKTA 60
           MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATV SKIDLRSGYHQLR KDGDVPKTA
Sbjct: 376 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 435

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120
           FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH
Sbjct: 436 FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 495

Query: 121 LRIVLQTLRDNKLYAKFSKWSF 143
           LRIVLQTLRDNKLYAKFSK  F
Sbjct: 496 LRIVLQTLRDNKLYAKFSKCEF 517

[Close]

BLAST of Cmc11g0304201 vs. ExPASy TrEMBL
Match: A0A5A7SJH3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G00700 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.6e-71
Identity = 137/142 (96.48%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVISKIDLRSGYHQLRSKDGDVPKTA 60
           MRLCIDYRELNKVTVKN+YPLPRIDDLFDQLQGATV SKIDLRSGYHQLR KDGDVPKTA
Sbjct: 641 MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 700

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120
           FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH
Sbjct: 701 FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 760

Query: 121 LRIVLQTLRDNKLYAKFSKWSF 143
           LRIVLQTLRDNKLYAKFSK  F
Sbjct: 761 LRIVLQTLRDNKLYAKFSKCEF 782

[Close]

BLAST of Cmc11g0304201 vs. ExPASy TrEMBL
Match: A0A5A7VJN7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold62G00030 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.1e-71
Identity = 136/142 (95.77%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVISKIDLRSGYHQLRSKDGDVPKTA 60
           MRLCIDYRELNKVTVKN+YPLPRIDDLFDQLQGATV SKIDLRSGYHQLR KDGDVPKTA
Sbjct: 196 MRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 255

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120
           FRSRYGHYEFIVMSFGLTNAP VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH
Sbjct: 256 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 315

Query: 121 LRIVLQTLRDNKLYAKFSKWSF 143
           LRIVLQTLRDNKLYAKFSK+ F
Sbjct: 316 LRIVLQTLRDNKLYAKFSKYEF 337

[Close]

BLAST of Cmc11g0304201 vs. ExPASy TrEMBL
Match: A0A5A7SUW2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00470 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.1e-71
Identity = 137/142 (96.48%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVISKIDLRSGYHQLRSKDGDVPKTA 60
           MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATV SKIDLRSGYHQLR KDGDVPKTA
Sbjct: 388 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 447

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120
           FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH+EH
Sbjct: 448 FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEH 507

Query: 121 LRIVLQTLRDNKLYAKFSKWSF 143
           LRIVLQTLRDNKLYAKFSK  F
Sbjct: 508 LRIVLQTLRDNKLYAKFSKCEF 529

[Close]

BLAST of Cmc11g0304201 vs. ExPASy TrEMBL
Match: A0A5A7SQU8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00040 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 2.7e-71
Identity = 137/142 (96.48%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1    MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVISKIDLRSGYHQLRSKDGDVPKTA 60
            MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATV SKIDLRSGYHQLR KDGDVPKTA
Sbjct: 994  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 1053

Query: 61   FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120
            FRSRYGHYEFIVMSFGLTNAP VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH
Sbjct: 1054 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 1113

Query: 121  LRIVLQTLRDNKLYAKFSKWSF 143
            LRIVLQTLRDNKLYAKFSK  F
Sbjct: 1114 LRIVLQTLRDNKLYAKFSKCEF 1135

The following BLAST results are available for this feature:

BLAST of Cmc11g0304201 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040402.1	1.5e-71	97.18	pol protein [Cucumis melo var. makuwa]	[more]
KAA0025469.1	3.3e-71	96.48	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065935.1	4.3e-71	95.77	pol protein [Cucumis melo var. makuwa]	[more]
KAA0033251.1	4.3e-71	96.48	pol protein [Cucumis melo var. makuwa]	[more]
KAA0026271.1	5.6e-71	96.48	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0304201 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P31843	3.5e-36	56.15	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
Q99315	3.2e-29	46.10	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	3.2e-29	46.10	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	3.6e-28	40.85	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	3.6e-28	40.85	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc11g0304201 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TAB9	7.1e-72	97.18	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35...	[more]
A0A5A7SJH3	1.6e-71	96.48	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41...	[more]
A0A5A7VJN7	2.1e-71	95.77	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold62...	[more]
A0A5A7SUW2	2.1e-71	96.48	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84...	[more]
A0A5A7SQU8	2.7e-71	96.48	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]

BLAST of Cmc11g0304201 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..79 e-value: 5.4E-60 score: 204.3
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..139
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..139
None	No IPR available	CDD	cd01647	RT_LTR	coord: 2..143 e-value: 8.01261E-73 score: 213.611
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 19..143 e-value: 5.4E-60 score: 204.3
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..142 e-value: 2.2E-23 score: 82.9
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0304201.1	Cmc11g0304201.1	mRNA