Cmc11g0303921 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0303921
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CMiso1.1chr11: 25485583 .. 25486576 (+)
RNA-Seq Expression	Cmc11g0303921
Synteny	Cmc11g0303921

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCATTTGGGAAAATATCCAACTTTGAATTACATCACCAAAATTATCACATAGGCAAGCAGTGAAAAGAATCATCAAAGGAACATTGAAACATGGACTTCTACTAAAGAAACCTACCAACTTCACCGCTCAGGCCTTTGTTGATGCCGACTGGGCATCTAACCCTGACGACAGACGTTTAACCTCTGGAATATGTGTGTACTTTTGTGGAAATTTCATCACTTGGGAATCAAGAAAGCAACACACTATGTCTAGATCAAGCACCGAAGCAAAATTCCACTGCCTTGCAAACGCAGCCACTGAACTTGTATGGCTAGCCTCCCTCTTCAAAGAACTAAAGATCCATCTACCAAAACCACCAATACTATGGTGGGACAATCTTGGAGCTGTTCACCTAAGCACAAACCCAATACTACACTCAATAACAAAAACATGTAGAGCTAGACATCTACTTTGTCAGAGACCTTATTCTAAAACGGAAGATTACAGTTCAACACCTTCCAGAAACGACTCAAGTTGCAGATATACTGACCAAGCCACTATCTGCACATTCCTTCATTCCACTTCGATCAAAATTAGGTGTTACACATGCTGCAGACATTGGCTTAAGGGGGATATTAAGGCAGCTCACTAACAAAGTCCAGAAAACAGTTGCTAAACAGTTTAGTTGTTAAATATTTAAATCAGTTGTTGTACAGTTTTACTCATAAAGAAATAAGTTTTTCTGTTTTTTCTGTCTACTCATTTCCCATTACGAAAGGAAATGGCATGTACCTAAATAATTCATCCAAAACTTCTCGACTTTCTCTGTTTCTTTACCTTTCTGCTGCCCTCTCTTCACGACAACACACTACTGCCCGACGGCAGCGCGATCGAATAAAATTGGCGGCTGGGATGAACGACGAAAGGACTTCGCACACGTGTGGCTTGCAGATCTCAGCGGCAGAGCATCACGAACGACAGCAAGAACTGCAGCGTGGCTCGGATGGCTTCCA

mRNA sequence

TTCATTTGGGAAAATATCCAACTTTGAATTACATCACCAAAATTATCACATAGGCAAGCAGTGAAAAGAATCATCAAAGGAACATTGAAACATGGACTTCTACTAAAGAAACCTACCAACTTCACCGCTCAGGCCTTTGTTGATGCCGACTGGGCATCTAACCCTGACGACAGACGTTTAACCTCTGGAATATGTGTGTACTTTTGTGGAAATTTCATCACTTGGGAATCAAGAAAGCAACACACTATGTCTAGATCAAGCACCGAAGCAAAATTCCACTGCCTTGCAAACGCAGCCACTGAACTTGTATGGCTAGCCTCCCTCTTCAAAGAACTAAAGATCCATCTACCAAAACCACCAATACTATGGTGGGACAATCTTGGAGCTGTTCACCTAAGCACAAACCCAATACTACACTCAATAACAAAAACATGTAGAGCTAGACATCTACTTTGTCAGAGACCTTATTCTAAAACGGAAGATTACAGTTCAACACCTTCCAGAAACGACTCAAGTTGCAGATATACTGACCAAGCCACTATCTGCACATTCCTTCATTCCACTTCGATCAAAATTAGGTGTTACACATGCTGCAGACATTGGCTTAAGGGGGATATTAAGGCAGCTCACTAACAAAGTCCAGAAAACAGTTGCTAAACAGTTTAGTTGTTAAATATTTAAATCAGTTGTTGTACAGTTTTACTCATAAAGAAATAAGTTTTTCTGTTTTTTCTGTCTACTCATTTCCCATTACGAAAGGAAATGGCATGTACCTAAATAATTCATCCAAAACTTCTCGACTTTCTCTGTTTCTTTACCTTTCTGCTGCCCTCTCTTCACGACAACACACTACTGCCCGACGGCAGCGCGATCGAATAAAATTGGCGGCTGGGATGAACGACGAAAGGACTTCGCACACGTGTGGCTTGCAGATCTCAGCGGCAGAGCATCACGAACGACAGCAAGAACTGCAGCGTGGCTCGGATGGCTTCCA

Coding sequence (CDS)

ATGTCTAGATCAAGCACCGAAGCAAAATTCCACTGCCTTGCAAACGCAGCCACTGAACTTGTATGGCTAGCCTCCCTCTTCAAAGAACTAAAGATCCATCTACCAAAACCACCAATACTATGGTGGGACAATCTTGGAGCTGTTCACCTAAGCACAAACCCAATACTACACTCAATAACAAAAACATGTAGAGCTAGACATCTACTTTGTCAGAGACCTTATTCTAAAACGGAAGATTACAGTTCAACACCTTCCAGAAACGACTCAAGTTGCAGATATACTGACCAAGCCACTATCTGCACATTCCTTCATTCCACTTCGATCAAAATTAGGTGTTACACATGCTGCAGACATTGGCTTAAGGGGGATATTAAGGCAGCTCACTAA

Protein sequence

MSRSSTEAKFHCLANAATELVWLASLFKELKIHLPKPPILWWDNLGAVHLSTNPILHSITKTCRARHLLCQRPYSKTEDYSSTPSRNDSSCRYTDQATICTFLHSTSIKIRCYTCCRHWLKGDIKAAH

Homology

[Close]

BLAST of Cmc11g0303921 vs. NCBI nr
Match: TYK26823.1 (serine/threonine-protein kinase TIO-like [Cucumis melo var. makuwa])

HSP 1 Score: 274.6 bits (701), Expect = 4.2e-70
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MSRSSTEAKFHCLANAATELVWLASLFKELKIHLPKPPILWWDNLGAVHLSTNPILHSIT 60
           MSRSSTEAKFHCLANAATELVWLASLFKELKIHLPKPPILWWDNLGAVHLSTNPILHSIT
Sbjct: 310 MSRSSTEAKFHCLANAATELVWLASLFKELKIHLPKPPILWWDNLGAVHLSTNPILHSIT 369

Query: 61  KTCRARHLLCQRPYSKTEDYSSTPSRNDSSCRYTDQATICTFLHSTSIKIRCYTCCRHWL 120
           KTCRARHLLCQRPYSKTEDYSSTPSRNDSSCRYTDQATICTFLHSTSIKIRCYTCCRHWL
Sbjct: 370 KTCRARHLLCQRPYSKTEDYSSTPSRNDSSCRYTDQATICTFLHSTSIKIRCYTCCRHWL 429

Query: 121 KGDIKAAH 129
           KGDIKAAH
Sbjct: 430 KGDIKAAH 437

[Close]

BLAST of Cmc11g0303921 vs. NCBI nr
Match: KAA0033503.1 (serine/threonine-protein kinase TIO-like [Cucumis melo var. makuwa])

HSP 1 Score: 274.6 bits (701), Expect = 4.2e-70
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MSRSSTEAKFHCLANAATELVWLASLFKELKIHLPKPPILWWDNLGAVHLSTNPILHSIT 60
           MSRSSTEAKFHCLANAATELVWLASLFKELKIHLPKPPILWWDNLGAVHLSTNPILHSIT
Sbjct: 333 MSRSSTEAKFHCLANAATELVWLASLFKELKIHLPKPPILWWDNLGAVHLSTNPILHSIT 392

Query: 61  KTCRARHLLCQRPYSKTEDYSSTPSRNDSSCRYTDQATICTFLHSTSIKIRCYTCCRHWL 120
           KTCRARHLLCQRPYSKTEDYSSTPSRNDSSCRYTDQATICTFLHSTSIKIRCYTCCRHWL
Sbjct: 393 KTCRARHLLCQRPYSKTEDYSSTPSRNDSSCRYTDQATICTFLHSTSIKIRCYTCCRHWL 452

Query: 121 KGDIKAAH 129
           KGDIKAAH
Sbjct: 453 KGDIKAAH 460

[Close]

BLAST of Cmc11g0303921 vs. NCBI nr
Match: KAE8652955.1 (hypothetical protein Csa_017752, partial [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-14
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1   MSRSSTEAKFHCLANAATELVWLASLFKELKIHLPKPPILWWDNLGAVHLSTNPILHSIT 60
           +SRS TE +  CLAN ATE+VWLASLFKELKI  PK PIL  DNLG VHLS NPILHSIT
Sbjct: 54  VSRSITEVELCCLANTATEVVWLASLFKELKILPPKQPILRCDNLGVVHLSANPILHSIT 113

Query: 61  K 62
           K
Sbjct: 114 K 114

[Close]

BLAST of Cmc11g0303921 vs. NCBI nr
Match: XP_016902754.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 4.3e-14
Identity = 43/61 (70.49%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1   MSRSSTEAKFHCLANAATELVWLASLFKELKIHLPKPPILWWDNLGAVHLSTNPILHSIT 60
           +SRSSTEA++ CLA  ATELVW+ SL  +L I LP PPILW DNL AVHLS NPILHS T
Sbjct: 166 ISRSSTEAEYRCLALLATELVWIRSLLNDLYIDLPFPPILWCDNLSAVHLSANPILHSKT 225

Query: 61  K 62
           K
Sbjct: 226 K 226

[Close]

BLAST of Cmc11g0303921 vs. NCBI nr
Match: KAA0048296.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK10641.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 4.3e-14
Identity = 43/61 (70.49%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1   MSRSSTEAKFHCLANAATELVWLASLFKELKIHLPKPPILWWDNLGAVHLSTNPILHSIT 60
           +SRSSTEA++ CLA  ATELVW+ SL  +L I LP PPILW DNL AVHLS NPILHS T
Sbjct: 211 ISRSSTEAEYRCLALLATELVWIRSLLNDLYIDLPFPPILWCDNLSAVHLSANPILHSKT 270

Query: 61  K 62
           K
Sbjct: 271 K 271

[Close]

BLAST of Cmc11g0303921 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-10
Identity = 28/59 (47.46%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 3    RSSTEAKFHCLANAATELVWLASLFKELKIHLPKPPILWWDNLGAVHLSTNPILHSITK 62
            RSSTEA++  +AN ++E+ W+ SL  EL I L +PP+++ DN+GA +L  NP+ HS  K
Sbjct: 1351 RSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMK 1409

[Close]

BLAST of Cmc11g0303921 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-10
Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 3    RSSTEAKFHCLANAATELVWLASLFKELKIHLPKPPILWWDNLGAVHLSTNPILHSITK 62
            RSSTEA++  +AN ++EL W+ SL  EL I L  PP+++ DN+GA +L  NP+ HS  K
Sbjct: 1334 RSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMK 1392

[Close]

BLAST of Cmc11g0303921 vs. ExPASy TrEMBL
Match: A0A5A7SSR7 (Serine/threonine-protein kinase TIO-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00420 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.0e-70
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MSRSSTEAKFHCLANAATELVWLASLFKELKIHLPKPPILWWDNLGAVHLSTNPILHSIT 60
           MSRSSTEAKFHCLANAATELVWLASLFKELKIHLPKPPILWWDNLGAVHLSTNPILHSIT
Sbjct: 333 MSRSSTEAKFHCLANAATELVWLASLFKELKIHLPKPPILWWDNLGAVHLSTNPILHSIT 392

Query: 61  KTCRARHLLCQRPYSKTEDYSSTPSRNDSSCRYTDQATICTFLHSTSIKIRCYTCCRHWL 120
           KTCRARHLLCQRPYSKTEDYSSTPSRNDSSCRYTDQATICTFLHSTSIKIRCYTCCRHWL
Sbjct: 393 KTCRARHLLCQRPYSKTEDYSSTPSRNDSSCRYTDQATICTFLHSTSIKIRCYTCCRHWL 452

Query: 121 KGDIKAAH 129
           KGDIKAAH
Sbjct: 453 KGDIKAAH 460

[Close]

BLAST of Cmc11g0303921 vs. ExPASy TrEMBL
Match: A0A5D3DT79 (Serine/threonine-protein kinase TIO-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00110 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.0e-70
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MSRSSTEAKFHCLANAATELVWLASLFKELKIHLPKPPILWWDNLGAVHLSTNPILHSIT 60
           MSRSSTEAKFHCLANAATELVWLASLFKELKIHLPKPPILWWDNLGAVHLSTNPILHSIT
Sbjct: 310 MSRSSTEAKFHCLANAATELVWLASLFKELKIHLPKPPILWWDNLGAVHLSTNPILHSIT 369

Query: 61  KTCRARHLLCQRPYSKTEDYSSTPSRNDSSCRYTDQATICTFLHSTSIKIRCYTCCRHWL 120
           KTCRARHLLCQRPYSKTEDYSSTPSRNDSSCRYTDQATICTFLHSTSIKIRCYTCCRHWL
Sbjct: 370 KTCRARHLLCQRPYSKTEDYSSTPSRNDSSCRYTDQATICTFLHSTSIKIRCYTCCRHWL 429

Query: 121 KGDIKAAH 129
           KGDIKAAH
Sbjct: 430 KGDIKAAH 437

[Close]

BLAST of Cmc11g0303921 vs. ExPASy TrEMBL
Match: A0A5D3CFS1 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00030 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.1e-14
Identity = 43/61 (70.49%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1   MSRSSTEAKFHCLANAATELVWLASLFKELKIHLPKPPILWWDNLGAVHLSTNPILHSIT 60
           +SRSSTEA++ CLA  ATELVW+ SL  +L I LP PPILW DNL AVHLS NPILHS T
Sbjct: 211 ISRSSTEAEYRCLALLATELVWIRSLLNDLYIDLPFPPILWCDNLSAVHLSANPILHSKT 270

Query: 61  K 62
           K
Sbjct: 271 K 271

[Close]

BLAST of Cmc11g0303921 vs. ExPASy TrEMBL
Match: A0A1S4E3F1 (uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=LOC107991866 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.1e-14
Identity = 43/61 (70.49%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1   MSRSSTEAKFHCLANAATELVWLASLFKELKIHLPKPPILWWDNLGAVHLSTNPILHSIT 60
           +SRSSTEA++ CLA  ATELVW+ SL  +L I LP PPILW DNL AVHLS NPILHS T
Sbjct: 166 ISRSSTEAEYRCLALLATELVWIRSLLNDLYIDLPFPPILWCDNLSAVHLSANPILHSKT 225

Query: 61  K 62
           K
Sbjct: 226 K 226

[Close]

BLAST of Cmc11g0303921 vs. ExPASy TrEMBL
Match: A0A6P9DWK5 (uncharacterized mitochondrial protein AtMg00810-like OS=Juglans regia OX=51240 GN=LOC118343988 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.1e-13
Identity = 46/95 (48.42%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 1   MSRSSTEAKFHCLANAATELVWLASLFKELKIHLPKPPILWWDNLGAVHLSTNPILHSIT 60
           ++ SSTEA++  LAN   E++WL SL KEL I LPK PILW DNLGA +LS NPILHS T
Sbjct: 269 VAHSSTEAEYKALANTTAEVLWLQSLLKELHIFLPKAPILWCDNLGATYLSVNPILHSRT 328

Query: 61  KTCRAR-HLLCQRPYSKTEDYSSTPSRNDSSCRYT 95
           K      H +  R  +KT   +  PS++  +  +T
Sbjct: 329 KHMEIDFHFVRDRVAAKTIQVAFLPSKDQLADIFT 363

[Close]

BLAST of Cmc11g0303921 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 64.3 bits (155), Expect = 8.1e-11
Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 1   MSRSSTEAKFHCLANAATELVWLASLFKELKIHLPKPPILWWDNLGAVHLSTNPILHSIT 60
           +S+SS EA++  L+ A  E++WLA  F+EL++ L KP +L+ DN  A+H++TN + H  T
Sbjct: 482 VSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERT 541

Query: 61  KTCRAR-HLLCQRP-YSKTEDYS 82
           K   +  H + +R  Y  T  YS
Sbjct: 542 KHIESDCHSVRERSVYQATLSYS 564

The following BLAST results are available for this feature:

BLAST of Cmc11g0303921 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK26823.1	4.2e-70	100.00	serine/threonine-protein kinase TIO-like [Cucumis melo var. makuwa]	[more]
KAA0033503.1	4.2e-70	100.00	serine/threonine-protein kinase TIO-like [Cucumis melo var. makuwa]	[more]
KAE8652955.1	1.1e-14	75.41	hypothetical protein Csa_017752, partial [Cucumis sativus]	[more]
XP_016902754.1	4.3e-14	70.49	PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]	[more]
KAA0048296.1	4.3e-14	70.49	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK10641.1 putative m...	[more]

BLAST of Cmc11g0303921 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	2.3e-10	47.46	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	3.0e-10	49.15	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc11g0303921 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SSR7	2.0e-70	100.00	Serine/threonine-protein kinase TIO-like OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3DT79	2.0e-70	100.00	Serine/threonine-protein kinase TIO-like OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CFS1	2.1e-14	70.49	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S4E3F1	2.1e-14	70.49	uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A6P9DWK5	5.1e-13	48.42	uncharacterized mitochondrial protein AtMg00810-like OS=Juglans regia OX=51240 G...	[more]

BLAST of Cmc11g0303921 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	8.1e-11	39.76	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 2..61 e-value: 7.67721E-20 score: 77.1233

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0303921.1	Cmc11g0303921.1	mRNA