Cmc11g0303881 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0303881
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr11: 25451611 .. 25454666 (+)
RNA-Seq Expression	Cmc11g0303881
Synteny	Cmc11g0303881

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTATTTGATGAGTTTGAGAAGAAAGGAAAAGAAAAAGAAGAATAATAATTAATATTATTATTTTTAGTTAAATGGGACAAAGAGAGTTTGGACTCCATCTTCTTCCTCTTAAAAACCCTAAAAGAAAAACCCTAACCCCTCAATCAACCCGCCGCCACTCTCCTCCGTCCAGTAGCCACCGCGAGTCACTGTCGGCCGCCGCATCTTCTTCGTCAATCGAAGCCTAGCCGCGCATCCCAATCATTCGACAGTCACGTCGTCGTTCGCAGCCGATCATCCGCATCCGCCGCTCTCCTCTGCCGTCAGTCGCTGCCCCAACCCCAACCCGCGTGAATCCGTATCGTGCAGCCAACCCGAGCCAATCTACTACCCCGAGCTTCCACCCGCAGATTCGAGGTGAGCCTTACCGCCGTCAGCGTCTTCATCTATATTTCGTGTGTCGCCGATAAAGCCTAGCTGCGTCAGCCATCCGTCGAAGCTCTTCCGTCGCAGCCGTGAGCAAGCATGTGCAAGCTACCATTCCCAACCGCGCTTTATCTTTTAGTCGTGAAGATCGAGCCTCGCCTTCGCCTGAGCCACGCCAGCCACCCGCACCTTCGCCCGAGCTGCGCCAGCCACCCGCATGAATCCGAGACGCGCCCCAGCCGTTGACCTTCAGCCGAGCCGTTTCCCTATCAAATCGAGCCGCCTGTTTTCCTTCAACTAAGCCACCTAGGTAGTTTTTCCCCTAGTCAAGCCATATTGAGCCACCAAGCTTATTTTTGGCTTTTTACCTATTTTTGGTAAGTTTGAGTTGGGTTTTGGTTAGTGCCCGACAAATATTGATTTTGGATCCTAGATAATTTAATTATGGATTTAACTGAATTTTTTTATGATAGATCAATTGGAAGTTGAACTGTGGAACCTTGTCCTAAATTAAGGTAAATTAAGGTTGAGTTGGATCCGACCTCCACTTTGAGTAAGTTGAATTAACTTGATTTTTTTTATCCTAAATTAACTGCAAATTTAGTTATTTTCTTAGCATTTTACCCTTAATGTTTAGGATCTTTCTTGGGAAGCTTGACCTAGCTGTAATGATTTTAATTCTTTCGATTAAACTAATCTCCAAGTAAGAGATTTTACGACTAGACTTTCGACTGAAATTAAAAGATCACATGTGTGTATGGTTATGCATGGACGATAGCTTATTTGCATAACTCGATGTTATTTATTATGACTGACATTGTATTGATGTTTGATGTTGATGACTGATGTCATGTTATGACTGGTAGTATGTTGATGAAGACGACTGCATTATGCTTATGATTAAGATATTTGGATAAGTATGTTATGATTGTTATGTCATGCATGCCATGTTTATGATAATATTATGACACGTTACATGCTATGGATAGGGTATATTGTTAGCTTCACCTATTAGAGTCGTACCCACATGGGTGTCCCTCGAGATCACCACCTTTTATGATTGTGTAGCTCGACGGGATCACCAGTCCACTATGACATTGACATAGACATGATTATGAGTGATTTGACGGGGTCACTCACAGTCCGATTGTCTTAGTGTTCCCTTTGGGTACATTAAAGACAATTTTGTTCTAGATGTTCCTTTGGGTTCACCGAGGACCAGATATATTCCTACGGGACCACAAATTGCATGTGTATGGGAACGTGCTAGTTCAGAGGTACTACCTTTACAGGACTCTAATAGGAAGTTAACATACACCTAGCAGGACTAGTAGTGGGTCCCTTATTGAGTTTATTTTATGCTCACTTTTTCTTGTTTAATTTTACAGGTAAGAGTAGAGGGAAGCTGGTGAATGACAAAAAGTGACCGTGGCGAGCCATAGGGATCATTATTGCTTTCGCTTTATGTCGTTTGATCTGATGCATTATTTTATTTTATTTTATTTAAAACTAGATAGGGCCCGAGTTAAGATTTTGTTAAATTTTATCTTTAAAATATTTGTTTATGATTTTAATAAGTATTTGAGGTTTTGTTTTATTTTCTATTTTTTTTATTTAAGAAATTTTATTATCTTTTTAATTAGTAATGGCCTCAGCTTAGTATAAGGAGTTGGATCGTTACACGGTGCTTCTTCTCATATATGCCATGACAAATCCTTGTTTAATAAGCTTCACAGTATCAAAATATGATAGTCATACTGCTTACTAAAGTCCGTCTAAAAGTTGAGTACACATGTGACATTCCAATAGCAAAACAAGTGATTTTAAAATATGTTTTTTACACTCCTGAATTCAATACAATTTACTGTCATGAGTGCTCTTCTTAAGGATAAGAGATATTCTATATCCTTCACTAACTCTAATTGTATCATTCAGGACAAGTCACAGTTTCAAAAATGATTGGGAAGATTAAATTAATCAGTGGACTCTACTTGCTCAGAATAAAGGACGATAAGAGTAAAGAGTTTTCTACTCGATCTACTGCATTACTATGTAAAGCATCCACAACCACATGGCATAAACGCATGGGACACCCCTCTATCAATAAAATAAAAGAATTGTCCAAAAGGATAGAGATTTCCGATTCTTTGAATTGTAAAGAAACTTGTCATGTTTGTCTCTTAGCTAAACAGAAACGTCTTTCATTTCCAGCCTTGAATAATGTTGCTGAAAACATATTTGACCTTGTGCATTGTGGCATATGGGGTCCTTTTAAAACTCAAACTCATGTAGGTCATTCTTATTTTGCTACCATAGTTGATGATAAGTTAAGATATACTTGGGTTCATCTTTTGAGAAATAAAAACAATATTCTACAAGTCATCCCTTGTTTCTTTAAACTTGTTGAGACCCAATTTTCAAAGGTGATTAAAAACTTTCGTCCTAGCAATGCTCTTGAGTTAAATTTCAAAGAACTCTTTGCTAAAACTGGAACCAACCACCAGTTTTCATGTGCTTACACTCCACAGCATAACTCAGTTGTTGAGAGAAAACATCAGTACCTCCTTAATGTTGCAAGAACTTTGATGTTTCAGTCCAAAGTTCTCCTTGCCTTCTGGGGAGAATGTGTTCTGACGCAGCTTACTTGA

mRNA sequence

GTTTTATTTGATGAGTTTGAGAAGAAAGGAAAAGAAAAAGAAGAATAATAATTAATATTATTATTTTTAGTTAAATGGGACAAAGAGAGTTTGGACTCCATCTTCTTCCTCTTAAAAACCCTAAAAGAAAAACCCTAACCCCTCAATCAACCCGCCGCCACTCTCCTCCGTCCAGTAGCCACCGCGAGTCACTGTCGGCCGCCGCATCTTCTTCGTCAATCGAAGCCTAGCCGCGCATCCCAATCATTCGACAGTCACGTCGTCGTTCGCAGCCGATCATCCGCATCCGCCGCTCTCCTCTGCCGTCAGTCGCTGCCCCAACCCCAACCCGCGTGAATCCGTATCGTGCAGCCAACCCGAGCCAATCTACTACCCCGAGCTTCCACCCGCAGATTCGAGGTGAGCCTTACCGCCGTCAGCGTCTTCATCTATATTTCGTGTGTCGCCGATAAAGCCTAGCTGCGTCAGCCATCCGTCGAAGCTCTTCCGTCGCAGCCGTGAGCAAGCATGTGCAAGCTACCATTCCCAACCGCGCTTTATCTTTTAGTCGTGAAGATCGAGCCTCGCCTTCGCCTGAGCCACGCCAGCCACCCGCACCTTCGCCCGAGCTGCGCCAGCCACCCGCATGAATCCGAGACGCGCCCCAGCCGTTGACCTTCAGCCGAGCCGTTTCCCTATCAAATCGAGCCGCCTGTTTTCCTTCAACTAAGCCACCTAGGTAGTTTTTCCCCTAGTCAAGCCATATTGAGCCACCAAGCTTATTTTTGGCTTTTTACCTATTTTTGATCAATTGGAAGTTGAACTGTGGAACCTTGTCCTAAATTAAGGTAAATTAAGGTTGAGTTGGATCCGACCTCCACTTTGAGTAAGTTGAATTAACTTGATTTTTTTTATCCTAAATTAACTGCAAATTTAGTTATTTTCTTAGCATTTTACCCTTAATGTTTAGGATCTTTCTTGGGAAGCTTGACCTAGCTGTAATGATTTTAATTCTTTCGATTAAACTAATCTCCAAGTAAGAGATTTTACGACTAGACTTTCGACTGAAATTAAAAGATCACATGTGTGTATGGTTATGCATGGACGATAGCTTATTTGCATAACTCGATGTTATTTATTATGACTGACATTGTATTGATGTTTGATGTTGATGACTGATGTCATGTTATGACTGGTAGTATGTTGATGAAGACGACTGCATTATGCTTATGATTAAGATATTTGGATAAGTATGTTATGATTGTTATGTCATGCATGCCATGTTTATGATAATATTATGACACGTTACATGCTATGGATAGGGTATATTGTTAGCTTCACCTATTAGAGTCGTACCCACATGGGTGTCCCTCGAGATCACCACCTTTTATGATTGTGTAGCTCGACGGGATCACCAGTCCACTATGACATTGACATAGACATGATTATGAGTGATTTGACGGGGTCACTCACAGTCCGATTGTCTTAGTGTTCCCTTTGGGTACATTAAAGACAATTTTGTTCTAGATGTTCCTTTGGGTTCACCGAGGACCAGATATATTCCTACGGGACCACAAATTGCATGTGTATGGGAACGTGCTAGTTCAGAGGTAAGAGTAGAGGGAAGCTGGTGAATGACAAAAAGTGACCGTGGCGAGCCATAGGGATCATTATTGCTTTCGCTTTATGTCGTTTGATCTGATGCATTATTTTATTTTATTTTATTTAAAACTAGATAGGGCCCGAGTTAAGATTTTGTTAAATTTTATCTTTAAAATATTTGTTTATGATTTTAATAAGTATTTGAGGTTTTGTTTTATTTTCTATTTTTTTTATTTAAGAAATTTTATTATCTTTTTAATTAGTAATGGCCTCAGCTTAGTATAAGGAGTTGGATCGTTACACGGTGCTTCTTCTCATATATGCCATGACAAATCCTTGTTTAATAAGCTTCACAGTATCAAAATATGATAGTCATACTGCTTACTAAAGTCCGTCTAAAAGTTGAGTACACATGTGACATTCCAATAGCAAAACAAGTGATTTTAAAATATGTTTTTTACACTCCTGAATTCAATACAATTTACTGTCATGAGTGCTCTTCTTAAGGATAAGAGATATTCTATATCCTTCACTAACTCTAATTGTATCATTCAGGACAAGTCACAGTTTCAAAAATGATTGGGAAGATTAAATTAATCAGTGGACTCTACTTGCTCAGAATAAAGGACGATAAGAGTAAAGAGTTTTCTACTCGATCTACTGCATTACTATGTAAAGCATCCACAACCACATGGCATAAACGCATGGGACACCCCTCTATCAATAAAATAAAAGAATTGTCCAAAAGGATAGAGATTTCCGATTCTTTGAATTGTAAAGAAACTTGTCATGTTTGTCTCTTAGCTAAACAGAAACGTCTTTCATTTCCAGCCTTGAATAATGTTGCTGAAAACATATTTGACCTTGTGCATTGTGGCATATGGGGTCCTTTTAAAACTCAAACTCATGTAGGTCATTCTTATTTTGCTACCATAGTTGATGATAAGTTAAGATATACTTGGGTTCATCTTTTGAGAAATAAAAACAATATTCTACAAGTCATCCCTTGTTTCTTTAAACTTGTTGAGACCCAATTTTCAAAGGTGATTAAAAACTTTCGTCCTAGCAATGCTCTTGAGTTAAATTTCAAAGAACTCTTTGCTAAAACTGGAACCAACCACCAGTTTTCATGTGCTTACACTCCACAGCATAACTCAGTTGTTGAGAGAAAACATCAGTACCTCCTTAATGTTGCAAGAACTTTGATGTTTCAGTCCAAAGTTCTCCTTGCCTTCTGGGGAGAATGTGTTCTGACGCAGCTTACTTGA

Coding sequence (CDS)

ATGATTGGGAAGATTAAATTAATCAGTGGACTCTACTTGCTCAGAATAAAGGACGATAAGAGTAAAGAGTTTTCTACTCGATCTACTGCATTACTATGTAAAGCATCCACAACCACATGGCATAAACGCATGGGACACCCCTCTATCAATAAAATAAAAGAATTGTCCAAAAGGATAGAGATTTCCGATTCTTTGAATTGTAAAGAAACTTGTCATGTTTGTCTCTTAGCTAAACAGAAACGTCTTTCATTTCCAGCCTTGAATAATGTTGCTGAAAACATATTTGACCTTGTGCATTGTGGCATATGGGGTCCTTTTAAAACTCAAACTCATGTAGGTCATTCTTATTTTGCTACCATAGTTGATGATAAGTTAAGATATACTTGGGTTCATCTTTTGAGAAATAAAAACAATATTCTACAAGTCATCCCTTGTTTCTTTAAACTTGTTGAGACCCAATTTTCAAAGGTGATTAAAAACTTTCGTCCTAGCAATGCTCTTGAGTTAAATTTCAAAGAACTCTTTGCTAAAACTGGAACCAACCACCAGTTTTCATGTGCTTACACTCCACAGCATAACTCAGTTGTTGAGAGAAAACATCAGTACCTCCTTAATGTTGCAAGAACTTTGATGTTTCAGTCCAAAGTTCTCCTTGCCTTCTGGGGAGAATGTGTTCTGACGCAGCTTACTTGA

Protein sequence

MIGKIKLISGLYLLRIKDDKSKEFSTRSTALLCKASTTTWHKRMGHPSINKIKELSKRIEISDSLNCKETCHVCLLAKQKRLSFPALNNVAENIFDLVHCGIWGPFKTQTHVGHSYFATIVDDKLRYTWVHLLRNKNNILQVIPCFFKLVETQFSKVIKNFRPSNALELNFKELFAKTGTNHQFSCAYTPQHNSVVERKHQYLLNVARTLMFQSKVLLAFWGECVLTQLT

Homology

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BLAST of Cmc11g0303881 vs. NCBI nr
Match: KAG7587171.1 (Integrase catalytic core [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 228.4 bits (581), Expect = 6.2e-56
Identity = 115/230 (50.00%), Postives = 152/230 (66.09%), Query Frame = 0


Query: 1   MIGKIKLISGLYLLRIKDDKSKEFST--RSTALLCKASTTTWHKRMGHPSINKIKELSKR 60
           MIG   L+  LY+L ++  K+   ++   +      A  T WH+R+GHPS  K+++LS  
Sbjct: 572 MIGSANLLHNLYILNLQSLKTPTNASIVNNFCGSLTADGTIWHQRLGHPSTAKLEQLSGT 631

Query: 61  IEISDS-LNCKETCHVCLLAKQKRLSFPALNNVAENIFDLVHCGIWGPFKTQTHVGHSYF 120
           + ++ S L+    CHVC LAKQKRLSFP  NNV+ N FDL+H  IWGPF  ++  G+ +F
Sbjct: 632 LSLAKSALSSHTHCHVCPLAKQKRLSFPFNNNVSSNPFDLIHLDIWGPFSVESIEGYKFF 691

Query: 121 ATIVDDKLRYTWVHLLRNKNNILQVIPCFFKLVETQFSKVIKNFRPSNALELNFKELFAK 180
            TIVDD  R TW+++L+NK+++  V   F KL+ TQ+   IK  R  NA EL F EL  +
Sbjct: 692 LTIVDDCTRVTWIYMLKNKSDVSNVFSTFIKLIFTQYQTKIKAIRSDNAPELKFNELVKE 751

Query: 181 TGTNHQFSCAYTPQHNSVVERKHQYLLNVARTLMFQSKVLLAFWGECVLT 228
            G  H FSCAYTPQ NSVVERKHQ+LLNVAR L+FQSKV L +W +CVLT
Sbjct: 752 NGMIHYFSCAYTPQQNSVVERKHQHLLNVARALLFQSKVPLIYWSDCVLT 801

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BLAST of Cmc11g0303881 vs. NCBI nr
Match: CAE5963143.1 (unnamed protein product [Arabidopsis arenosa])

HSP 1 Score: 227.3 bits (578), Expect = 1.4e-55
Identity = 115/234 (49.15%), Postives = 158/234 (67.52%), Query Frame = 0


Query: 1   MIGKIKLISGLYLLRIKDDKSKEFSTRSTALLCKA----STTTWHKRMGHPSINKIKELS 60
           MIGK +L + LY L   D +S+   +++++L+C      S++ WH R+GHPS +KI+ LS
Sbjct: 96  MIGKGRLQNKLYFL---DSESQSSQSQASSLICNLNNSDSSSLWHSRLGHPSFSKIQALS 155

Query: 61  KRIEISDS-LNCKETCHVCLLAKQKRLSFPALNNVAENIFDLVHCGIWGPFKTQTHVGHS 120
           + + +S + L     C  C LAKQ+RLSFP+LNNV++N FDLVH  +WGPF   +  G  
Sbjct: 156 EDLSLSKTKLKDWSHCKTCHLAKQRRLSFPSLNNVSKNPFDLVHLDVWGPFSVVSTEGFR 215

Query: 121 YFATIVDDKLRYTWVHLLRNKNNILQVIPCFFKLVETQFSKVIKNFRPSNALELNFKELF 180
           YF T+VDD  R TWV+LL++K+++L V P F  LVETQ+S+ +K  R  NA EL+F  L 
Sbjct: 216 YFLTLVDDCSRVTWVYLLKSKSDVLTVFPSFLNLVETQYSQKVKAIRSDNAPELSFTSLL 275

Query: 181 AKTGTNHQFSCAYTPQHNSVVERKHQYLLNVARTLMFQSKVLLAFWGECVLTQL 230
           A  G  H FSC  TPQ NSVVERKHQ++LNVAR L+FQS V L +W +C+ T +
Sbjct: 276 ASKGIFHYFSCVDTPQQNSVVERKHQHILNVARALLFQSNVPLEYWSDCIKTSV 326

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BLAST of Cmc11g0303881 vs. NCBI nr
Match: CAA3023561.1 (retroelement pol poly [Olea europaea subsp. europaea])

HSP 1 Score: 226.9 bits (577), Expect = 1.8e-55
Identity = 110/228 (48.25%), Postives = 150/228 (65.79%), Query Frame = 0


Query: 1   MIGKIKLISGLYLLRIKDDKSKEFSTRSTALLCKASTTTWHKRMGHPSINKIKELSKRIE 60
           MIGK  +I GLY+L  KD     F++ S A +   S   WH R+GH S  ++  L   + 
Sbjct: 46  MIGKGSIIQGLYVLDTKD-----FNSVSDAFIGSVSAHVWHNRLGHLSFKRLDVLKDHLP 105

Query: 61  ISDSLNCKE-TCHVCLLAKQKRLSFPALNNVAENIFDLVHCGIWGPFKTQTHVGHSYFAT 120
               ++ K   C++C LAKQ+RLSF + N+++   FDL+HC IWGP+   +H G+ YF T
Sbjct: 106 YDTEMSNKHLPCYICPLAKQRRLSFESHNHLSNQPFDLIHCDIWGPYHVTSHFGYRYFMT 165

Query: 121 IVDDKLRYTWVHLLRNKNNILQVIPCFFKLVETQFSKVIKNFRPSNALELNFKELFAKTG 180
           +VDD  R+TW+++L+ K++ +  +  FF LV TQF  VIK+FR  NA EL+FK+ F++ G
Sbjct: 166 LVDDHFRFTWLYMLKQKSDAVGAVHRFFNLVATQFRAVIKSFRSDNAGELSFKDFFSEKG 225

Query: 181 TNHQFSCAYTPQHNSVVERKHQYLLNVARTLMFQSKVLLAFWGECVLT 228
             HQFSC   PQ NSVVERKHQ+LLNVAR L FQS+V + FW ECVLT
Sbjct: 226 VIHQFSCVERPQQNSVVERKHQHLLNVARALFFQSRVPIKFWSECVLT 268

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BLAST of Cmc11g0303881 vs. NCBI nr
Match: XP_012857659.1 (PREDICTED: uncharacterized protein LOC105976934 [Erythranthe guttata])

HSP 1 Score: 224.9 bits (572), Expect = 6.9e-55
Identity = 113/227 (49.78%), Postives = 148/227 (65.20%), Query Frame = 0


Query: 2   IGKIKLISGLYLLRIKDDKSKEFSTRSTALLCKASTTTWHKRMGHPSINKIKELSKRIEI 61
           IGK   + GLY+L   D  S   S    A   K S T WH R+GH    K+  L+K+  +
Sbjct: 501 IGKGNKVQGLYVL---DPVSA--SPIEHAFCNKISATVWHHRLGHIPQPKLAFLAKKFSL 560

Query: 62  S-DSLNCKETCHVCLLAKQKRLSFPALNNVAENIFDLVHCGIWGPFKTQTHVGHSYFATI 121
           S D ++    C+VC LAKQKRL F   ++V+  +FDL+HC IWGPFK  ++ G  YF T+
Sbjct: 561 SVDKISESSCCYVCPLAKQKRLHFSNSSSVSTAMFDLIHCDIWGPFKVPSYSGFHYFVTL 620

Query: 122 VDDKLRYTWVHLLRNKNNILQVIPCFFKLVETQFSKVIKNFRPSNALELNFKELFAKTGT 181
           VDD  R+TWVHLL+ K+ ++ V+P F K+V  QF K IK FR  NA EL FK LF + G 
Sbjct: 621 VDDYSRFTWVHLLKTKSEVITVVPRFLKMVLNQFGKSIKVFRSDNAYELQFKSLFDELGV 680

Query: 182 NHQFSCAYTPQHNSVVERKHQYLLNVARTLMFQSKVLLAFWGECVLT 228
            HQFSC YTPQ N++VERKHQ++LNVAR+L FQS + + +W EC+LT
Sbjct: 681 IHQFSCVYTPQQNAIVERKHQHILNVARSLFFQSHIPITYWSECILT 722

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BLAST of Cmc11g0303881 vs. NCBI nr
Match: KAA0065480.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] >TYK08721.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 2.6e-54
Identity = 117/223 (52.47%), Postives = 148/223 (66.37%), Query Frame = 0


Query: 1   MIGKIKLISGLYLLRIKDDKSKEFSTRSTALLCK---ASTTTWHKRMGHPSINKIKELSK 60
           MIGK    +GLY+L      +KE +T   A   K    S  TWH+R+GH S   +  LS 
Sbjct: 476 MIGKASCQNGLYVL------NKEANTNCIAAGVKINAISVDTWHQRLGHLSPKCLSSLSS 535

Query: 61  RIEISDSLNCKETCHVCLLAKQKRLSFPALNNVAENIFDLVHCGIWGPFKTQTHVGHSYF 120
            + +S+      +CHVC LAKQKRLSF + NNVA + FDLVH  IWGPFK  ++ G+ YF
Sbjct: 536 TLCLSNHSIHHSSCHVCPLAKQKRLSFHSNNNVASSPFDLVHADIWGPFKIPSYGGYKYF 595

Query: 121 ATIVDDKLRYTWVHLLRNKNNILQVIPCFFKLVETQFSKVIKNFRPSNALELNFKELFAK 180
            T+VDD LR+TWV++LR K+++L ++P FF+L+ETQFSKVIK+FR  NA EL   E FA+
Sbjct: 596 LTLVDDCLRFTWVYMLRQKSDVLHIVPKFFQLIETQFSKVIKSFRSDNAPELKLTEFFAQ 655

Query: 181 TGTNHQFSCAYTPQHNSVVERKHQYLLNVARTLMFQSKVLLAF 221
            GT HQFSC   PQ NSVVERKHQ+LLNVAR L F  +    F
Sbjct: 656 KGTVHQFSCVEQPQQNSVVERKHQHLLNVARALFFSQEFQSVF 692

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BLAST of Cmc11g0303881 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 8.8e-29
Identity = 69/196 (35.20%), Postives = 106/196 (54.08%), Query Frame = 0


Query: 36  STTTWHKRMGHPSINKIKELSKRIEISDSLNCK-ETCHVCLLAKQKRLSFPALNNVAENI 95
           S   WHKRMGH S   ++ L+K+  IS +     + C  CL  KQ R+SF   +    NI
Sbjct: 421 SVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNI 480

Query: 96  FDLVHCGIWGPFKTQTHVGHSYFATIVDDKLRYTWVHLLRNKNNILQVIPCFFKLVETQF 155
            DLV+  + GP + ++  G+ YF T +DD  R  WV++L+ K+ + QV   F  LVE + 
Sbjct: 481 LDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERET 540

Query: 156 SKVIKNFRPSNALEL---NFKELFAKTGTNHQFSCAYTPQHNSVVERKHQYLLNVARTLM 215
            + +K  R  N  E     F+E  +  G  H+ +   TPQHN V ER ++ ++   R+++
Sbjct: 541 GRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSML 600

Query: 216 FQSKVLLAFWGECVLT 228
             +K+  +FWGE V T
Sbjct: 601 RMAKLPKSFWGEAVQT 616

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BLAST of Cmc11g0303881 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.4e-18
Identity = 51/192 (26.56%), Postives = 95/192 (49.48%), Query Frame = 0


Query: 34  KASTTTWHKRMGHPSINKIKELSKRIEISDSLNCKE---TCHVCLLAKQKRLSFPALNNV 93
           KA+ ++WH R+GHP+ + +  +     +S  LN      +C  CL+ K  ++ F      
Sbjct: 461 KATHSSWHARLGHPAPSILNSVISNYSLS-VLNPSHKFLSCSDCLINKSNKVPFSQSTIN 520

Query: 94  AENIFDLVHCGIWGPFKTQTHVGHSYFATIVDDKLRYTWVHLLRNKNNILQVIPCFFKLV 153
           +    + ++  +W      +H  + Y+   VD   RYTW++ L+ K+ + +    F  L+
Sbjct: 521 STRPLEYIYSDVWSS-PILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLL 580

Query: 154 ETQFSKVIKNFRPSNALE-LNFKELFAKTGTNHQFSCAYTPQHNSVVERKHQYLLNVART 213
           E +F   I  F   N  E +   E F++ G +H  S  +TP+HN + ERKH++++    T
Sbjct: 581 ENRFQTRIGTFYSDNGGEFVALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLT 640

Query: 214 LMFQSKVLLAFW 222
           L+  + +   +W
Sbjct: 641 LLSHASIPKTYW 650

[Close]

BLAST of Cmc11g0303881 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-17
Identity = 60/201 (29.85%), Postives = 94/201 (46.77%), Query Frame = 0


Query: 40  WHKRMGHPSINKIKELSKRIEISD-------SLNCKETCHVCLLAKQKRLSFPAL---NN 99
           WH+R GH S  K+ E+ ++   SD        L+C E C  CL  KQ RL F  L    +
Sbjct: 418 WHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSC-EICEPCLNGKQARLPFKQLKDKTH 477

Query: 100 VAENIFDLVHCGIWGPFKTQTHVGHSYFATIVDDKLRYTWVHLLRNKNNILQVIPCFFKL 159
           +   +F +VH  + GP    T    +YF   VD    Y   +L++ K+++  +   F   
Sbjct: 478 IKRPLF-VVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAK 537

Query: 160 VETQFSKVIKNFRPSNALEL---NFKELFAKTGTNHQFSCAYTPQHNSVVERKHQYLLNV 219
            E  F+  +      N  E      ++   K G ++  +  +TPQ N V ER  + +   
Sbjct: 538 SEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEK 597

Query: 220 ARTLMFQSKVLLAFWGECVLT 228
           ART++  +K+  +FWGE VLT
Sbjct: 598 ARTMVSGAKLDKSFWGEAVLT 616

[Close]

BLAST of Cmc11g0303881 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.6e-16
Identity = 46/191 (24.08%), Postives = 93/191 (48.69%), Query Frame = 0


Query: 34  KASTTTWHKRMGHPSINKIKEL--SKRIEISDSLNCKETCHVCLLAKQKRLSFPALNNVA 93
           KA+ ++WH R+GHPS+  +  +  +  + + +  +   +C  C + K  ++ F      +
Sbjct: 440 KATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITS 499

Query: 94  ENIFDLVHCGIWGPFKTQTHVGHSYFATIVDDKLRYTWVHLLRNKNNILQVIPCFFKLVE 153
               + ++  +W      +   + Y+   VD   RYTW++ L+ K+ +      F  LVE
Sbjct: 500 SKPLEYIYSDVWSS-PILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVE 559

Query: 154 TQFSKVIKNFRPSNALE-LNFKELFAKTGTNHQFSCAYTPQHNSVVERKHQYLLNVARTL 213
            +F   I      N  E +  ++  ++ G +H  S  +TP+HN + ERKH++++ +  TL
Sbjct: 560 NRFQTRIGTLYSDNGGEFVVLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTL 619

Query: 214 MFQSKVLLAFW 222
           +  + V   +W
Sbjct: 620 LSHASVPKTYW 629

[Close]

BLAST of Cmc11g0303881 vs. ExPASy TrEMBL
Match: A0A5A7VE66 (Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00250 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.3e-54
Identity = 117/223 (52.47%), Postives = 148/223 (66.37%), Query Frame = 0


Query: 1   MIGKIKLISGLYLLRIKDDKSKEFSTRSTALLCK---ASTTTWHKRMGHPSINKIKELSK 60
           MIGK    +GLY+L      +KE +T   A   K    S  TWH+R+GH S   +  LS 
Sbjct: 476 MIGKASCQNGLYVL------NKEANTNCIAAGVKINAISVDTWHQRLGHLSPKCLSSLSS 535

Query: 61  RIEISDSLNCKETCHVCLLAKQKRLSFPALNNVAENIFDLVHCGIWGPFKTQTHVGHSYF 120
            + +S+      +CHVC LAKQKRLSF + NNVA + FDLVH  IWGPFK  ++ G+ YF
Sbjct: 536 TLCLSNHSIHHSSCHVCPLAKQKRLSFHSNNNVASSPFDLVHADIWGPFKIPSYGGYKYF 595

Query: 121 ATIVDDKLRYTWVHLLRNKNNILQVIPCFFKLVETQFSKVIKNFRPSNALELNFKELFAK 180
            T+VDD LR+TWV++LR K+++L ++P FF+L+ETQFSKVIK+FR  NA EL   E FA+
Sbjct: 596 LTLVDDCLRFTWVYMLRQKSDVLHIVPKFFQLIETQFSKVIKSFRSDNAPELKLTEFFAQ 655

Query: 181 TGTNHQFSCAYTPQHNSVVERKHQYLLNVARTLMFQSKVLLAF 221
            GT HQFSC   PQ NSVVERKHQ+LLNVAR L F  +    F
Sbjct: 656 KGTVHQFSCVEQPQQNSVVERKHQHLLNVARALFFSQEFQSVF 692

[Close]

BLAST of Cmc11g0303881 vs. ExPASy TrEMBL
Match: A0A5D3D1N3 (Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00250 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 9.1e-53
Identity = 109/227 (48.02%), Postives = 147/227 (64.76%), Query Frame = 0


Query: 2   IGKIKLISGLYLLRIKDDKSKEFSTRSTALLCKASTTTWHKRMGHPSINKIKELSKRIEI 61
           IG  KL  GLY+L    D+   F +       KAS   WH+RMGHPS   +  L   + +
Sbjct: 108 IGSAKLFQGLYIL----DQPTCFPSICAVTANKAS--LWHQRMGHPSTETLNSLQIPLFL 167

Query: 62  SDSLNCKET-CHVCLLAKQKRLSFPALNNVAENIFDLVHCGIWGPFKTQTHVGHSYFATI 121
             S   K + C +C LAKQ++LSF + N+++ N FDL+H  IWGPF T+T+  +SYF TI
Sbjct: 168 KPSTVDKMSHCTICPLAKQRKLSFTSNNHLSSNAFDLIHVDIWGPFSTETYSEYSYFLTI 227

Query: 122 VDDKLRYTWVHLLRNKNNILQVIPCFFKLVETQFSKVIKNFRPSNALELNFKELFAKTGT 181
           VDD  RYTWV +L+ K++++ +IP FFKL+ETQ+ K IK  R  NA +L F   F + G 
Sbjct: 228 VDDATRYTWVFMLKLKSDVISIIPHFFKLIETQYGKAIKKVRSDNAHKLKFTTFFEQKGV 287

Query: 182 NHQFSCAYTPQHNSVVERKHQYLLNVARTLMFQSKVLLAFWGECVLT 228
            HQ+SC   PQ NSVVE+KHQ++LN AR L FQS+V L FWG+C++T
Sbjct: 288 IHQYSCVQWPQQNSVVEKKHQHILNTARALYFQSQVPLNFWGDCIVT 328

[Close]

BLAST of Cmc11g0303881 vs. ExPASy TrEMBL
Match: A0A5A7VQN7 (Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G002210 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 9.1e-53
Identity = 109/227 (48.02%), Postives = 147/227 (64.76%), Query Frame = 0


Query: 2   IGKIKLISGLYLLRIKDDKSKEFSTRSTALLCKASTTTWHKRMGHPSINKIKELSKRIEI 61
           IG  KL  GLY+L    D+   F +       KAS   WH+RMGHPS   +  L   + +
Sbjct: 108 IGSAKLFQGLYIL----DQPTCFPSICAVTANKAS--LWHQRMGHPSTETLNSLQIPLFL 167

Query: 62  SDSLNCKET-CHVCLLAKQKRLSFPALNNVAENIFDLVHCGIWGPFKTQTHVGHSYFATI 121
             S   K + C +C LAKQ++LSF + N+++ N FDL+H  IWGPF T+T+  +SYF TI
Sbjct: 168 KPSTVDKMSHCTICPLAKQRKLSFTSNNHLSSNAFDLIHVDIWGPFSTETYSEYSYFLTI 227

Query: 122 VDDKLRYTWVHLLRNKNNILQVIPCFFKLVETQFSKVIKNFRPSNALELNFKELFAKTGT 181
           VDD  RYTWV +L+ K++++ +IP FFKL+ETQ+ K IK  R  NA +L F   F + G 
Sbjct: 228 VDDATRYTWVFMLKLKSDVISIIPHFFKLIETQYGKAIKKVRSDNAHKLKFTTFFEQKGV 287

Query: 182 NHQFSCAYTPQHNSVVERKHQYLLNVARTLMFQSKVLLAFWGECVLT 228
            HQ+SC   PQ NSVVE+KHQ++LN AR L FQS+V L FWG+C++T
Sbjct: 288 IHQYSCVQWPQQNSVVEKKHQHILNTARALYFQSQVPLNFWGDCIVT 328

[Close]

BLAST of Cmc11g0303881 vs. ExPASy TrEMBL
Match: A0A1J3HJY9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Noccaea caerulescens OX=107243 GN=LE_TR2272_c1_g1_i1_g.6347 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-51
Identity = 110/227 (48.46%), Postives = 145/227 (63.88%), Query Frame = 0


Query: 2   IGKIKLISGLYLLRIKDDKSKEFSTRSTALLCKASTTTWHKRMGHPSINKIKELSKRIEI 61
           IG+ K I+ LY+L   D  S   S  +           WHKR+GHPS+++I  +SK + I
Sbjct: 21  IGQGKRIANLYVL---DTTSSLISVNAV-----VDVGVWHKRLGHPSLSRITTISKTLGI 80

Query: 62  SDSLN-CKETCHVCLLAKQKRLSFPALNNVAENIFDLVHCGIWGPFKTQTHVGHSYFATI 121
           S   N     CH+C LAKQ++LSFP  NN+     +L+H  +WGPF  +T  G+ YF TI
Sbjct: 81  SKHKNKGLAYCHICHLAKQRKLSFPYPNNICNTNLELLHIDVWGPFSVETLDGYKYFLTI 140

Query: 122 VDDKLRYTWVHLLRNKNNILQVIPCFFKLVETQFSKVIKNFRPSNALELNFKELFAKTGT 181
           VDD  R TWV+LLR+K+++L V P F K+VE QF+  IK+ R  NA EL F +LF + G 
Sbjct: 141 VDDHSRATWVYLLRSKSDVLTVFPAFIKMVENQFAAKIKSVRSDNAPELRFTKLFQEKGI 200

Query: 182 NHQFSCAYTPQHNSVVERKHQYLLNVARTLMFQSKVLLAFWGECVLT 228
               SC  TP+ NSVVERKHQ++L VAR LMFQS+V L FWG+C+LT
Sbjct: 201 ISYHSCPETPEQNSVVERKHQHILTVARALMFQSQVPLTFWGDCILT 239

[Close]

BLAST of Cmc11g0303881 vs. ExPASy TrEMBL
Match: A0A6D2HNE3 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS2842 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.7e-51
Identity = 108/231 (46.75%), Postives = 148/231 (64.07%), Query Frame = 0


Query: 1   MIGKIKLISGLYLLRIKDDKSKEFSTRSTALLC---KASTTTWHKRMGHPSINKIKELSK 60
           MIG+ KL+  LY+L   +D +   S+ S +L C    A  + WH R+GHPS + +++L  
Sbjct: 561 MIGRAKLLHNLYILDNTEDATPSASS-SPSLFCGSVLADVSVWHSRLGHPSFSTLQKLKS 620

Query: 61  RI-EISDSLNCKETCHVCLLAKQKRLSFPALNNVAENIFDLVHCGIWGPFKTQTHVGHSY 120
            +    D  +    C VC LAKQ+RL++ + NN+A   FDL+H  IWGPF  ++  G+ Y
Sbjct: 621 ILPSFKDHSSDLFHCSVCPLAKQRRLAYISHNNLASQPFDLIHLDIWGPFSVESVEGYRY 680

Query: 121 FATIVDDKLRYTWVHLLRNKNNILQVIPCFFKLVETQFSKVIKNFRPSNALELNFKELFA 180
           F TIVDD  R TW+++LRNK+++  V P F  L+ TQ++  +K  R  NA EL F  L  
Sbjct: 681 FLTIVDDCTRVTWLYMLRNKSDVCTVFPAFLSLISTQYNARLKAIRSDNAPELAFTSLLQ 740

Query: 181 KTGTNHQFSCAYTPQHNSVVERKHQYLLNVARTLMFQSKVLLAFWGECVLT 228
           + G  HQ SCAYTPQ NSVVERKHQ+LLNVAR L+FQS V L++W +CV T
Sbjct: 741 ERGIVHQLSCAYTPQQNSVVERKHQHLLNVARALLFQSNVPLSYWSDCVHT 790

The following BLAST results are available for this feature:

BLAST of Cmc11g0303881 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7587171.1	6.2e-56	50.00	Integrase catalytic core [Arabidopsis thaliana x Arabidopsis arenosa]	[more]
CAE5963143.1	1.4e-55	49.15	unnamed protein product [Arabidopsis arenosa]	[more]
CAA3023561.1	1.8e-55	48.25	retroelement pol poly [Olea europaea subsp. europaea]	[more]
XP_012857659.1	6.9e-55	49.78	PREDICTED: uncharacterized protein LOC105976934 [Erythranthe guttata]	[more]
KAA0065480.1	2.6e-54	52.47	Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] >T...	[more]

BLAST of Cmc11g0303881 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	8.8e-29	35.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	5.4e-18	26.56	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	2.7e-17	29.85	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	8.6e-16	24.08	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc11g0303881 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VE66	1.3e-54	52.47	Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa O...	[more]
A0A5D3D1N3	9.1e-53	48.02	Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa O...	[more]
A0A5A7VQN7	9.1e-53	48.02	Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa O...	[more]
A0A1J3HJY9	1.0e-51	48.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Noccae...	[more]
A0A6D2HNE3	1.7e-51	46.75	Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS2842 P...	[more]

BLAST of Cmc11g0303881 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 87..229 e-value: 3.2E-21 score: 77.5
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 10..79 e-value: 4.7E-12 score: 45.6
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 33..185
None	No IPR available	PANTHER	PTHR11439:SF326	SUBFAMILY NOT NAMED	coord: 33..185
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 81..230 score: 10.157429
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 90..227

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0303881.1	Cmc11g0303881.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding