Cmc11g0303771 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0303771
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr11: 25304623 .. 25305177 (-)
RNA-Seq Expression	Cmc11g0303771
Synteny	Cmc11g0303771

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTAAAGAGTGCCTTCTTAAATGGATACTTGAATGAGGAGGTTTATGTTGCTCAACCAAAAGGTTTTGTTGATTTCGAGCACCCAAAGCATGTGTATAAGCTCAACAAAGCCTTATATGGACTAAAGCAAGCACCGAGAGCTTGGTATGACCGACTAACTGTGTACTTGAGAGGTAAAGGATATTCTAGAGGAGAAATTGACAAGACCATGTTCATACACAGGAAATCTGACCAACTTTTGGTTGCTCAAATTTATGCTGATAACATCATTTTTGGAGGATTTTCTCAAGATCTAGTAAATAATTTCATTAATATCATGGAGTCAGAATTCAAAATGAGCATGGTTAGAGAGCTTTCATGCTTTCTGGGACTTCAAATTAAGCAAAAGAATGATGACATTTTCATATCTCAGGAAAAGTATGCCAGGAATATGGTCAAAAAGTTTGGTTTGGAACAGGCTCGAAATAAGCGGACTCCAGTTGTGACACATGTTAAACTTATAAAAAACACTGAAGGTGCTGAAGTTAATCAAAAACTTTACGGAGTATAG

mRNA sequence

ATGGATGTAAAGAGTGCCTTCTTAAATGGATACTTGAATGAGGAGGTTTATGTTGCTCAACCAAAAGGTTTTGTTGATTTCGAGCACCCAAAGCATGTGTATAAGCTCAACAAAGCCTTATATGGACTAAAGCAAGCACCGAGAGCTTGGTATGACCGACTAACTGTGTACTTGAGAGGTAAAGGATATTCTAGAGGAGAAATTGACAAGACCATGTTCATACACAGGAAATCTGACCAACTTTTGGTTGCTCAAATTTATGCTGATAACATCATTTTTGGAGGATTTTCTCAAGATCTAGTAAATAATTTCATTAATATCATGGAGTCAGAATTCAAAATGAGCATGGTTAGAGAGCTTTCATGCTTTCTGGGACTTCAAATTAAGCAAAAGAATGATGACATTTTCATATCTCAGGAAAAGTATGCCAGGAATATGGTCAAAAAGTTTGGTTTGGAACAGGCTCGAAATAAGCGGACTCCAGTTGTGACACATGTTAAACTTATAAAAAACACTGAAGGTGCTGAAGTTAATCAAAAACTTTACGGAGTATAG

Coding sequence (CDS)

ATGGATGTAAAGAGTGCCTTCTTAAATGGATACTTGAATGAGGAGGTTTATGTTGCTCAACCAAAAGGTTTTGTTGATTTCGAGCACCCAAAGCATGTGTATAAGCTCAACAAAGCCTTATATGGACTAAAGCAAGCACCGAGAGCTTGGTATGACCGACTAACTGTGTACTTGAGAGGTAAAGGATATTCTAGAGGAGAAATTGACAAGACCATGTTCATACACAGGAAATCTGACCAACTTTTGGTTGCTCAAATTTATGCTGATAACATCATTTTTGGAGGATTTTCTCAAGATCTAGTAAATAATTTCATTAATATCATGGAGTCAGAATTCAAAATGAGCATGGTTAGAGAGCTTTCATGCTTTCTGGGACTTCAAATTAAGCAAAAGAATGATGACATTTTCATATCTCAGGAAAAGTATGCCAGGAATATGGTCAAAAAGTTTGGTTTGGAACAGGCTCGAAATAAGCGGACTCCAGTTGTGACACATGTTAAACTTATAAAAAACACTGAAGGTGCTGAAGTTAATCAAAAACTTTACGGAGTATAG

Protein sequence

MDVKSAFLNGYLNEEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRGKGYSRGEIDKTMFIHRKSDQLLVAQIYADNIIFGGFSQDLVNNFINIMESEFKMSMVRELSCFLGLQIKQKNDDIFISQEKYARNMVKKFGLEQARNKRTPVVTHVKLIKNTEGAEVNQKLYGV

Homology

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BLAST of Cmc11g0303771 vs. NCBI nr
Match: KAA0033528.1 (uncharacterized protein E6C27_scaffold261G00720 [Cucumis melo var. makuwa] >TYJ95660.1 uncharacterized protein E5676_scaffold104G00910 [Cucumis melo var. makuwa])

HSP 1 Score: 365.5 bits (937), Expect = 2.6e-97
Identity = 181/184 (98.37%), Postives = 181/184 (98.37%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 60
           MDVKSAFLNGYLNEEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG
Sbjct: 1   MDVKSAFLNGYLNEEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 60

Query: 61  KGYSRGEIDKTMFIHRKSDQLLVAQIYADNIIFGGFSQDLVNNFINIMESEFKMSMVREL 120
           KGYSRGEIDKTMFIHRKSDQLLVAQIYADNIIFGGFSQDLVNNFINIMESEFKMSMV EL
Sbjct: 61  KGYSRGEIDKTMFIHRKSDQLLVAQIYADNIIFGGFSQDLVNNFINIMESEFKMSMVGEL 120

Query: 121 SCFLGLQIKQKNDDIFISQEKYARNMVKKFGLEQARNKRTPVVTHVKLIKNTEGAEVNQK 180
           SCFLGLQIKQKNDDIFISQEKYARNMVKKFGLEQARNKRTPVVTHVKL KNTEGAEVN K
Sbjct: 121 SCFLGLQIKQKNDDIFISQEKYARNMVKKFGLEQARNKRTPVVTHVKLTKNTEGAEVNHK 180

Query: 181 LYGV 185
           LYGV
Sbjct: 181 LYGV 184

[Close]

BLAST of Cmc11g0303771 vs. NCBI nr
Match: KAA0033021.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 334.3 bits (856), Expect = 6.5e-88
Identity = 164/182 (90.11%), Postives = 171/182 (93.96%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 60
           MDVKSAFLNGYLNEEVYVAQPKGFVD EHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG
Sbjct: 163 MDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 222

Query: 61  KGYSRGEIDKTMFIHRKSDQLLVAQIYADNIIFGGFSQDLVNNFINIMESEFKMSMVREL 120
           KGYS+GEIDKT+FIHRKSDQLLVAQIY D+IIFG F QDL+NNFINIM+SE +MSMV EL
Sbjct: 223 KGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIMQSEIEMSMVGEL 282

Query: 121 SCFLGLQIKQKNDDIFISQEKYARNMVKKFGLEQARNKRTPVVTHVKLIKNTEGAEVNQK 180
           SCFLGLQIKQKNDDI ISQEKYARNMVKKFGLEQARNKRTP  THVKL KNTEGAEV+ K
Sbjct: 283 SCFLGLQIKQKNDDILISQEKYARNMVKKFGLEQARNKRTPAATHVKLTKNTEGAEVDHK 342

Query: 181 LY 183
           LY
Sbjct: 343 LY 344

[Close]

BLAST of Cmc11g0303771 vs. NCBI nr
Match: TYK03438.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 334.3 bits (856), Expect = 6.5e-88
Identity = 164/182 (90.11%), Postives = 171/182 (93.96%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 60
           MDVKSAFLNGYLNEEVYVAQPKGFVD EHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG
Sbjct: 163 MDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 222

Query: 61  KGYSRGEIDKTMFIHRKSDQLLVAQIYADNIIFGGFSQDLVNNFINIMESEFKMSMVREL 120
           KGYS+GEIDKT+FIHRKSDQLLVAQIY D+IIFG F QDL+NNFINIM+SE +MSMV EL
Sbjct: 223 KGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIMQSEIEMSMVGEL 282

Query: 121 SCFLGLQIKQKNDDIFISQEKYARNMVKKFGLEQARNKRTPVVTHVKLIKNTEGAEVNQK 180
           SCFLGLQIKQKNDDI ISQEKYARNMVKKFGLEQARNKRTP  THVKL KNTEGAEV+ K
Sbjct: 283 SCFLGLQIKQKNDDILISQEKYARNMVKKFGLEQARNKRTPAATHVKLTKNTEGAEVDHK 342

Query: 181 LY 183
           LY
Sbjct: 343 LY 344

[Close]

BLAST of Cmc11g0303771 vs. NCBI nr
Match: KAA0041780.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK27068.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 330.5 bits (846), Expect = 9.3e-87
Identity = 161/182 (88.46%), Postives = 170/182 (93.41%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 60
           MDVKSAFLNGYLNEEVY+AQPKGF D +HPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG
Sbjct: 1   MDVKSAFLNGYLNEEVYLAQPKGFFDSQHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 60

Query: 61  KGYSRGEIDKTMFIHRKSDQLLVAQIYADNIIFGGFSQDLVNNFINIMESEFKMSMVREL 120
           KGYSRGEIDKT+FIHRKSDQLLVAQIY D+IIF GF QDL+NNFINIM+SEF+MSMV EL
Sbjct: 61  KGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFRGFPQDLINNFINIMQSEFEMSMVGEL 120

Query: 121 SCFLGLQIKQKNDDIFISQEKYARNMVKKFGLEQARNKRTPVVTHVKLIKNTEGAEVNQK 180
           SCFLGLQIKQKND IF+SQEKYARNMVKKFGLEQARNKRTP  THVKL K TEGAEV+ K
Sbjct: 121 SCFLGLQIKQKNDGIFMSQEKYARNMVKKFGLEQARNKRTPATTHVKLTKGTEGAEVDHK 180

Query: 181 LY 183
           LY
Sbjct: 181 LY 182

[Close]

BLAST of Cmc11g0303771 vs. NCBI nr
Match: KAA0066405.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK00880.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 325.5 bits (833), Expect = 3.0e-85
Identity = 160/182 (87.91%), Postives = 167/182 (91.76%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 60
           MDVKS FLNGYLNEEVYVAQPKGFVD EHPKH+YK NKALYGLKQA RAWYD LTVYLRG
Sbjct: 1   MDVKSTFLNGYLNEEVYVAQPKGFVDSEHPKHMYKFNKALYGLKQASRAWYDWLTVYLRG 60

Query: 61  KGYSRGEIDKTMFIHRKSDQLLVAQIYADNIIFGGFSQDLVNNFINIMESEFKMSMVREL 120
           KGYSRGEIDKT+FI+RKSDQLLV QIY D+IIFGGF QDLVNNFINIM+SEFKMSMV EL
Sbjct: 61  KGYSRGEIDKTLFIYRKSDQLLVTQIYVDDIIFGGFPQDLVNNFINIMQSEFKMSMVGEL 120

Query: 121 SCFLGLQIKQKNDDIFISQEKYARNMVKKFGLEQARNKRTPVVTHVKLIKNTEGAEVNQK 180
           SCFLGLQIKQ NDDIFISQEKY RNMVKKFGLEQARNKRTP VTHVKL K+TE AEV+ K
Sbjct: 121 SCFLGLQIKQNNDDIFISQEKYTRNMVKKFGLEQARNKRTPAVTHVKLTKDTESAEVDHK 180

Query: 181 LY 183
           LY
Sbjct: 181 LY 182

[Close]

BLAST of Cmc11g0303771 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.3e-26
Identity = 58/168 (34.52%), Postives = 98/168 (58.33%), Query Frame = 0


Query: 1    MDVKSAFLNGYLNEEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 60
            +DV +AFL G L +EVY++QP GFVD + P +V +L KA+YGLKQAPRAWY  L  YL  
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLT 1106

Query: 61   KGYSRGEIDKTMFIHRKSDQLLVAQIYADNIIFGGFSQDLVNNFINIMESEFKMSMVREL 120
             G+     D ++F+ ++   ++   +Y D+I+  G    L+ + ++ +   F +    +L
Sbjct: 1107 VGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDL 1166

Query: 121  SCFLGLQIKQKNDDIFISQEKYARNMVKKFGLEQARNKRTPVVTHVKL 169
              FLG++ K+    + +SQ +Y  +++ +  +  A+   TP+ T  KL
Sbjct: 1167 HYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKL 1214

[Close]

BLAST of Cmc11g0303771 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.3e-26
Identity = 59/168 (35.12%), Postives = 98/168 (58.33%), Query Frame = 0


Query: 1    MDVKSAFLNGYLNEEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 60
            +DV +AFL G L ++VY++QP GF+D + P +V KL KALYGLKQAPRAWY  L  YL  
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLT 1123

Query: 61   KGYSRGEIDKTMFIHRKSDQLLVAQIYADNIIFGGFSQDLVNNFINIMESEFKMSMVREL 120
             G+     D ++F+ ++   ++   +Y D+I+  G    L++N ++ +   F +    EL
Sbjct: 1124 IGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEEL 1183

Query: 121  SCFLGLQIKQKNDDIFISQEKYARNMVKKFGLEQARNKRTPVVTHVKL 169
              FLG++ K+    + +SQ +Y  +++ +  +  A+   TP+    KL
Sbjct: 1184 HYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKL 1231

[Close]

BLAST of Cmc11g0303771 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 7.6e-23
Identity = 59/183 (32.24%), Postives = 103/183 (56.28%), Query Frame = 0


Query: 1    MDVKSAFLNGYLNEEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 60
            +DVK+AFL+G L EE+Y+ QP+GF        V KLNK+LYGLKQAPR WY +   +++ 
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKS 980

Query: 61   KGYSRGEIDKTMFIHRKSD-QLLVAQIYADNIIFGGFSQDLVNNFINIMESEFKMSMVRE 120
            + Y +   D  ++  R S+   ++  +Y D+++  G  + L+      +   F M  +  
Sbjct: 981  QTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGP 1040

Query: 121  LSCFLGLQI--KQKNDDIFISQEKYARNMVKKFGLEQARNKRTPVVTHVKLIKNTEGAEV 180
                LG++I  ++ +  +++SQEKY   ++++F ++ A+   TP+  H+KL K      V
Sbjct: 1041 AQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTV 1100

[Close]

BLAST of Cmc11g0303771 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 107.5 bits (267), Expect = 1.7e-22
Identity = 54/168 (32.14%), Postives = 97/168 (57.74%), Query Frame = 0


Query: 1    MDVKSAFLNGYLNEEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 60
            MDVK+AFLNG L EE+Y+  P+G     +  +V KLNKA+YGLKQA R W++     L+ 
Sbjct: 1001 MDVKTAFLNGTLKEEIYMRLPQGISC--NSDNVCKLNKAIYGLKQAARCWFEVFEQALKE 1060

Query: 61   KGYSRGEIDKTMFIHRKS--DQLLVAQIYADNIIFGGFSQDLVNNFINIMESEFKMSMVR 120
              +    +D+ ++I  K   ++ +   +Y D+++        +NNF   +  +F+M+ + 
Sbjct: 1061 CEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLN 1120

Query: 121  ELSCFLGLQIKQKNDDIFISQEKYARNMVKKFGLEQARNKRTPVVTHV 167
            E+  F+G++I+ + D I++SQ  Y + ++ KF +E      TP+ + +
Sbjct: 1121 EIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKI 1166

[Close]

BLAST of Cmc11g0303771 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 2.1e-17
Identity = 51/173 (29.48%), Postives = 88/173 (50.87%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 60
           MDV +AFLN  ++E +YV QP GFV+  +P +V++L   +YGLKQAP  W + +   L+ 
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 61  KGYSRGEIDKTMFIHRKSDQLLVAQIYADNIIFGGFSQDLVNNFINIMESEFKMSMVREL 120
            G+ R E +  ++    SD  +   +Y D+++    S  + +     +   + M  + ++
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 121 SCFLGLQIKQ-KNDDIFISQEKYARNMVKKFGLEQARNKRTPVVTHVKLIKNT 173
             FLGL I Q  N DI +S + Y      +  +   +  +TP+     L + T
Sbjct: 121 DKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETT 173

[Close]

BLAST of Cmc11g0303771 vs. ExPASy TrEMBL
Match: A0A5D3B6P1 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00910 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.3e-97
Identity = 181/184 (98.37%), Postives = 181/184 (98.37%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 60
           MDVKSAFLNGYLNEEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG
Sbjct: 1   MDVKSAFLNGYLNEEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 60

Query: 61  KGYSRGEIDKTMFIHRKSDQLLVAQIYADNIIFGGFSQDLVNNFINIMESEFKMSMVREL 120
           KGYSRGEIDKTMFIHRKSDQLLVAQIYADNIIFGGFSQDLVNNFINIMESEFKMSMV EL
Sbjct: 61  KGYSRGEIDKTMFIHRKSDQLLVAQIYADNIIFGGFSQDLVNNFINIMESEFKMSMVGEL 120

Query: 121 SCFLGLQIKQKNDDIFISQEKYARNMVKKFGLEQARNKRTPVVTHVKLIKNTEGAEVNQK 180
           SCFLGLQIKQKNDDIFISQEKYARNMVKKFGLEQARNKRTPVVTHVKL KNTEGAEVN K
Sbjct: 121 SCFLGLQIKQKNDDIFISQEKYARNMVKKFGLEQARNKRTPVVTHVKLTKNTEGAEVNHK 180

Query: 181 LYGV 185
           LYGV
Sbjct: 181 LYGV 184

[Close]

BLAST of Cmc11g0303771 vs. ExPASy TrEMBL
Match: A0A5D3BWU5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00410 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 3.1e-88
Identity = 164/182 (90.11%), Postives = 171/182 (93.96%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 60
           MDVKSAFLNGYLNEEVYVAQPKGFVD EHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG
Sbjct: 163 MDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 222

Query: 61  KGYSRGEIDKTMFIHRKSDQLLVAQIYADNIIFGGFSQDLVNNFINIMESEFKMSMVREL 120
           KGYS+GEIDKT+FIHRKSDQLLVAQIY D+IIFG F QDL+NNFINIM+SE +MSMV EL
Sbjct: 223 KGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIMQSEIEMSMVGEL 282

Query: 121 SCFLGLQIKQKNDDIFISQEKYARNMVKKFGLEQARNKRTPVVTHVKLIKNTEGAEVNQK 180
           SCFLGLQIKQKNDDI ISQEKYARNMVKKFGLEQARNKRTP  THVKL KNTEGAEV+ K
Sbjct: 283 SCFLGLQIKQKNDDILISQEKYARNMVKKFGLEQARNKRTPAATHVKLTKNTEGAEVDHK 342

Query: 181 LY 183
           LY
Sbjct: 343 LY 344

[Close]

BLAST of Cmc11g0303771 vs. ExPASy TrEMBL
Match: A0A5A7SU23 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold269G001230 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 3.1e-88
Identity = 164/182 (90.11%), Postives = 171/182 (93.96%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 60
           MDVKSAFLNGYLNEEVYVAQPKGFVD EHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG
Sbjct: 163 MDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 222

Query: 61  KGYSRGEIDKTMFIHRKSDQLLVAQIYADNIIFGGFSQDLVNNFINIMESEFKMSMVREL 120
           KGYS+GEIDKT+FIHRKSDQLLVAQIY D+IIFG F QDL+NNFINIM+SE +MSMV EL
Sbjct: 223 KGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIMQSEIEMSMVGEL 282

Query: 121 SCFLGLQIKQKNDDIFISQEKYARNMVKKFGLEQARNKRTPVVTHVKLIKNTEGAEVNQK 180
           SCFLGLQIKQKNDDI ISQEKYARNMVKKFGLEQARNKRTP  THVKL KNTEGAEV+ K
Sbjct: 283 SCFLGLQIKQKNDDILISQEKYARNMVKKFGLEQARNKRTPAATHVKLTKNTEGAEVDHK 342

Query: 181 LY 183
           LY
Sbjct: 343 LY 344

[Close]

BLAST of Cmc11g0303771 vs. ExPASy TrEMBL
Match: A0A5D3DU96 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00670 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 4.5e-87
Identity = 161/182 (88.46%), Postives = 170/182 (93.41%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 60
           MDVKSAFLNGYLNEEVY+AQPKGF D +HPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG
Sbjct: 1   MDVKSAFLNGYLNEEVYLAQPKGFFDSQHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 60

Query: 61  KGYSRGEIDKTMFIHRKSDQLLVAQIYADNIIFGGFSQDLVNNFINIMESEFKMSMVREL 120
           KGYSRGEIDKT+FIHRKSDQLLVAQIY D+IIF GF QDL+NNFINIM+SEF+MSMV EL
Sbjct: 61  KGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFRGFPQDLINNFINIMQSEFEMSMVGEL 120

Query: 121 SCFLGLQIKQKNDDIFISQEKYARNMVKKFGLEQARNKRTPVVTHVKLIKNTEGAEVNQK 180
           SCFLGLQIKQKND IF+SQEKYARNMVKKFGLEQARNKRTP  THVKL K TEGAEV+ K
Sbjct: 121 SCFLGLQIKQKNDGIFMSQEKYARNMVKKFGLEQARNKRTPATTHVKLTKGTEGAEVDHK 180

Query: 181 LY 183
           LY
Sbjct: 181 LY 182

[Close]

BLAST of Cmc11g0303771 vs. ExPASy TrEMBL
Match: A0A5D3BPB5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00390 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.5e-85
Identity = 160/182 (87.91%), Postives = 167/182 (91.76%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 60
           MDVKS FLNGYLNEEVYVAQPKGFVD EHPKH+YK NKALYGLKQA RAWYD LTVYLRG
Sbjct: 1   MDVKSTFLNGYLNEEVYVAQPKGFVDSEHPKHMYKFNKALYGLKQASRAWYDWLTVYLRG 60

Query: 61  KGYSRGEIDKTMFIHRKSDQLLVAQIYADNIIFGGFSQDLVNNFINIMESEFKMSMVREL 120
           KGYSRGEIDKT+FI+RKSDQLLV QIY D+IIFGGF QDLVNNFINIM+SEFKMSMV EL
Sbjct: 61  KGYSRGEIDKTLFIYRKSDQLLVTQIYVDDIIFGGFPQDLVNNFINIMQSEFKMSMVGEL 120

Query: 121 SCFLGLQIKQKNDDIFISQEKYARNMVKKFGLEQARNKRTPVVTHVKLIKNTEGAEVNQK 180
           SCFLGLQIKQ NDDIFISQEKY RNMVKKFGLEQARNKRTP VTHVKL K+TE AEV+ K
Sbjct: 121 SCFLGLQIKQNNDDIFISQEKYTRNMVKKFGLEQARNKRTPAVTHVKLTKDTESAEVDHK 180

Query: 181 LY 183
           LY
Sbjct: 181 LY 182

[Close]

BLAST of Cmc11g0303771 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 97.8 bits (242), Expect = 9.5e-21
Identity = 61/186 (32.80%), Postives = 97/186 (52.15%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKGFV----DFEHPKHVYKLNKALYGLKQAPRAWYDRLTV 60
           +D+ +AFLNG L+EE+Y+  P G+     D   P  V  L K++YGLKQA R W+ + +V
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  YLRGKGYSRGEIDKTMFIHRKSDQLLVAQIYADNIIFGGFSQDLVNNFINIMESEFKMSM 120
            L G G+ +   D T F+   +   L   +Y D+II    +   V+   + ++S FK+  
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312

Query: 121 VRELSCFLGLQIKQKNDDIFISQEKYARNMVKKFGLEQARNKRTPVVTHVKLIKNTEGAE 180
           +  L  FLGL+I +    I I Q KYA +++ + GL   +    P+   V    ++ G  
Sbjct: 313 LGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDF 372

Query: 181 VNQKLY 183
           V+ K Y
Sbjct: 373 VDAKAY 378

[Close]

BLAST of Cmc11g0303771 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 6.6e-06
Identity = 26/77 (33.77%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 86  IYADNIIFGGFSQDLVNNFINIMESEFKMSMVRELSCFLGLQIKQKNDDIFISQEKYARN 145
           +Y D+I+  G S  L+N  I  + S F M  +  +  FLG+QIK     +F+SQ KYA  
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 146 MVKKFGLEQARNKRTPV 163
           ++   G+   +   TP+
Sbjct: 65  ILNNAGMLDCKPMSTPL 81

The following BLAST results are available for this feature:

BLAST of Cmc11g0303771 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033528.1	2.6e-97	98.37	uncharacterized protein E6C27_scaffold261G00720 [Cucumis melo var. makuwa] >TYJ9...	[more]
KAA0033021.1	6.5e-88	90.11	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK03438.1	6.5e-88	90.11	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0041780.1	9.3e-87	88.46	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK27068.1 gag-pol polyprotein [...	[more]
KAA0066405.1	3.0e-85	87.91	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK00880.1 gag-pol polyprotein [...	[more]

BLAST of Cmc11g0303771 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	3.3e-26	34.52	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	4.3e-26	35.12	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P10978	7.6e-23	32.24	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.7e-22	32.14	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P25600	2.1e-17	29.48	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc11g0303771 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3B6P1	1.3e-97	98.37	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3BWU5	3.1e-88	90.11	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G...	[more]
A0A5A7SU23	3.1e-88	90.11	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold269G...	[more]
A0A5D3DU96	4.5e-87	88.46	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G0...	[more]
A0A5D3BPB5	1.5e-85	87.91	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G...	[more]

BLAST of Cmc11g0303771 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	9.5e-21	32.80	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	6.6e-06	33.77	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..162 e-value: 2.9E-41 score: 141.7
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..164
None	No IPR available	PANTHER	PTHR11439:SF351	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 1..164
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0303771.1	Cmc11g0303771.1	mRNA