Cmc11g0303041 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0303041
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 24301935 .. 24302585 (-)
RNA-Seq Expression	Cmc11g0303041
Synteny	Cmc11g0303041

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCCTATGCATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGACCTGTTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGATCGGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACGACCTTTCGTTCCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGACAGTGTTTATGGACTTGATGAACAGAATGTTTAGGGAGTTCCTAGATACTTTTCTGATCGTGTTTATTGATGATATCTTGATATATTCCAAGACGGAGGTCGAGCATGAGGAACATTTACGTATGGTTCTACAAACCCTTCAGGATAATAAATTGTATGCAAAGTTCTCAAAATGTGAGTTTTGGTTGAAGCAGGTGTCCTTTCTAGGCCATGTGGTTTCTAAGGCTGGAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACTAGTTGGCCCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCCTGTATAGGTACTCCTCTTACTCAATTGACCAGGAAGGGAGCTCCTTTTGTTTAG

mRNA sequence

ATGCGCCTATGCATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGACCTGTTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGATCGGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACGACCTTTCGTTCCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGACAGTGTTTATGGACTTGATGAACAGAATGTTTAGGGAGTTCCTAGATACTTTTCTGATCGTGTTTATTGATGATATCTTGATATATTCCAAGACGGAGGTCGAGCATGAGGAACATTTACGTATGGTTCTACAAACCCTTCAGGATAATAAATTGTATGCAAAGTTCTCAAAATGTGAGTTTTGGTTGAAGCAGGTGTCCTTTCTAGGCCATGTGGTTTCTAAGGCTGGAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACTAGTTGGCCCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCCTGTATAGGTACTCCTCTTACTCAATTGACCAGGAAGGGAGCTCCTTTTGTTTAG

Coding sequence (CDS)

ATGCGCCTATGCATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGACCTGTTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGATCGGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACGACCTTTCGTTCCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGACAGTGTTTATGGACTTGATGAACAGAATGTTTAGGGAGTTCCTAGATACTTTTCTGATCGTGTTTATTGATGATATCTTGATATATTCCAAGACGGAGGTCGAGCATGAGGAACATTTACGTATGGTTCTACAAACCCTTCAGGATAATAAATTGTATGCAAAGTTCTCAAAATGTGAGTTTTGGTTGAAGCAGGTGTCCTTTCTAGGCCATGTGGTTTCTAAGGCTGGAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACTAGTTGGCCCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCCTGTATAGGTACTCCTCTTACTCAATTGACCAGGAAGGGAGCTCCTTTTGTTTAG

Protein sequence

MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTTFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRMFREFLDTFLIVFIDDILIYSKTEVEHEEHLRMVLQTLQDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSCIGTPLTQLTRKGAPFV

Homology

[Close]

BLAST of Cmc11g0303041 vs. NCBI nr
Match: KAA0042119.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 420.6 bits (1080), Expect = 8.0e-114
Identity = 206/216 (95.37%), Postives = 210/216 (97.22%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTT 60
           MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIK+GDVPKT 
Sbjct: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKNGDVPKTA 60

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRMFREFLDTFLIVFIDDILIYSKTEVEHEEH 120
           FRSRYGHYEFIVMSFGLTNAP VFMDLMNR+FREFLDTF+IVFIDDILIYSKTE EHEEH
Sbjct: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LRMVLQTLQDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSE 180
           LRMVLQTL+DNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW RPSTVSE
Sbjct: 121 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSE 180

Query: 181 VRSFLGLAGYYRRFVENFSCIGTPLTQLTRKGAPFV 217
           VRSFLGLAGYYRRFVENFS I TPLTQLTRKGAPFV
Sbjct: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 216

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BLAST of Cmc11g0303041 vs. NCBI nr
Match: KAA0046185.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 419.9 bits (1078), Expect = 1.4e-113
Identity = 205/216 (94.91%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 1    MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTT 60
            MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKT 
Sbjct: 898  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 957

Query: 61   FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRMFREFLDTFLIVFIDDILIYSKTEVEHEEH 120
            FRSRYGHYEFIVMSFGLTNAP VFMDLMNR+FREFLDTF+IVFIDDILIYSKTE EHEEH
Sbjct: 958  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 1017

Query: 121  LRMVLQTLQDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSE 180
            LRMVLQTL+DNKLYAKFSKCEFWLKQVSFLGH+VSKAGVSVDPAKIEAVT W RPSTVSE
Sbjct: 1018 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHMVSKAGVSVDPAKIEAVTGWTRPSTVSE 1077

Query: 181  VRSFLGLAGYYRRFVENFSCIGTPLTQLTRKGAPFV 217
            VRSFLGLAGYYRRFVENFS I TPLTQLTRKGAPFV
Sbjct: 1078 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 1113

[Close]

BLAST of Cmc11g0303041 vs. NCBI nr
Match: KAA0033251.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 419.9 bits (1078), Expect = 1.4e-113
Identity = 205/216 (94.91%), Postives = 210/216 (97.22%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTT 60
           MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKT 
Sbjct: 388 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 447

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRMFREFLDTFLIVFIDDILIYSKTEVEHEEH 120
           FRSRYGHYEFIVMSFGLTNAPTVFMDLMNR+FREFLDTF+IVFIDDILIYSKTE EH+EH
Sbjct: 448 FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEH 507

Query: 121 LRMVLQTLQDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSE 180
           LR+VLQTL+DNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSE
Sbjct: 508 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 567

Query: 181 VRSFLGLAGYYRRFVENFSCIGTPLTQLTRKGAPFV 217
           VRSFLGLAGYYRRFVENFS I TPLTQLTRKGAPFV
Sbjct: 568 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 603

[Close]

BLAST of Cmc11g0303041 vs. NCBI nr
Match: KAA0026271.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 419.5 bits (1077), Expect = 1.8e-113
Identity = 205/216 (94.91%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTT 60
           MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKT 
Sbjct: 191 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 250

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRMFREFLDTFLIVFIDDILIYSKTEVEHEEH 120
           FRSRYGHYEFIVMSFGLTNAP VFMDLMNR+FREFLDTF+IVFIDDILIYSKTE EHEEH
Sbjct: 251 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 310

Query: 121 LRMVLQTLQDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSE 180
           LR+VLQTL+DNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSE
Sbjct: 311 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 370

Query: 181 VRSFLGLAGYYRRFVENFSCIGTPLTQLTRKGAPFV 217
           VRSFLGLAGYYRRFVENFS I TPLTQLTRKGAPFV
Sbjct: 371 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 406

[Close]

BLAST of Cmc11g0303041 vs. NCBI nr
Match: KAA0047044.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 419.5 bits (1077), Expect = 1.8e-113
Identity = 205/216 (94.91%), Postives = 208/216 (96.30%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTT 60
           MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKT 
Sbjct: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 60

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRMFREFLDTFLIVFIDDILIYSKTEVEHEEH 120
           FRSRYGHYEFIVMSFGLTNAP VFMDLMNR+FREFLDTF+IVFIDDILIYSKTE EHEEH
Sbjct: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LRMVLQTLQDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSE 180
           LRMVLQTL+DNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIE VT W RPSTVSE
Sbjct: 121 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIETVTGWTRPSTVSE 180

Query: 181 VRSFLGLAGYYRRFVENFSCIGTPLTQLTRKGAPFV 217
           VRSFLGLAGYYRRFVENFS I TPLTQLTRKGAPFV
Sbjct: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 216

[Close]

BLAST of Cmc11g0303041 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.5e-49
Identity = 85/210 (40.48%), Postives = 137/210 (65.24%), Query Frame = 0


Query: 2   RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTTF 61
           R+ IDYR+LN++T+ +RYP+P +D++  +L     F+ IDL  G+HQ+ + +  + KT F
Sbjct: 262 RVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAF 321

Query: 62  RSRYGHYEFIVMSFGLTNAPTVFMDLMNRMFREFLDTFLIVFIDDILIYSKTEVEHEEHL 121
            ++ GHYE++ M FGL NAP  F   MN + R  L+   +V++DDI+I+S +  EH   +
Sbjct: 322 STKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSI 381

Query: 122 RMVLQTLQDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEV 181
           ++V   L D  L  +  KCEF  K+ +FLGH+V+  G+  +P K++A+ S+P P+   E+
Sbjct: 382 QLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEI 441

Query: 182 RSFLGLAGYYRRFVENFSCIGTPLTQLTRK 212
           R+FLGL GYYR+F+ N++ I  P+T   +K
Sbjct: 442 RAFLGLTGYYRKFIPNYADIAKPMTSCLKK 471

[Close]

BLAST of Cmc11g0303041 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 6.1e-48
Identity = 85/210 (40.48%), Postives = 137/210 (65.24%), Query Frame = 0


Query: 2   RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTTF 61
           R+ IDYR+LN++TV +R+P+P +D++  +L     F+ IDL  G+HQ+ +    V KT F
Sbjct: 263 RIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAF 322

Query: 62  RSRYGHYEFIVMSFGLTNAPTVFMDLMNRMFREFLDTFLIVFIDDILIYSKTEVEHEEHL 121
            +++GHYE++ M FGL NAP  F   MN + R  L+   +V++DDI+++S +  EH + L
Sbjct: 323 STKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSL 382

Query: 122 RMVLQTLQDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEV 181
            +V + L    L  +  KCEF  ++ +FLGHV++  G+  +P KIEA+  +P P+   E+
Sbjct: 383 GLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEI 442

Query: 182 RSFLGLAGYYRRFVENFSCIGTPLTQLTRK 212
           ++FLGL GYYR+F+ NF+ I  P+T+  +K
Sbjct: 443 KAFLGLTGYYRKFIPNFADIAKPMTKCLKK 472

[Close]

BLAST of Cmc11g0303041 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.7e-45
Identity = 81/209 (38.76%), Postives = 133/209 (63.64%), Query Frame = 0


Query: 2   RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTTF 61
           R+ +D++ LN VT+ + YP+P I+     L  A  F+ +DL SG+HQ+ +K+ D+PKT F
Sbjct: 179 RMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAF 238

Query: 62  RSRYGHYEFIVMSFGLTNAPTVFMDLMNRMFREFLDTFLIVFIDDILIYSKTEVEHEEHL 121
            +  G YEF+ + FGL NAP +F  +++ + RE +     V+IDDI+++S+    H ++L
Sbjct: 239 STLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNL 298

Query: 122 RMVLQTLQDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEV 181
           R+VL +L    L     K  F   QV FLG++V+  G+  DP K+ A++  P P++V E+
Sbjct: 299 RLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKEL 358

Query: 182 RSFLGLAGYYRRFVENFSCIGTPLTQLTR 211
           + FLG+  YYR+F+++++ +  PLT LTR
Sbjct: 359 KRFLGMTSYYRKFIQDYAKVAKPLTNLTR 387

[Close]

BLAST of Cmc11g0303041 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.0e-43
Identity = 83/209 (39.71%), Postives = 130/209 (62.20%), Query Frame = 0


Query: 2   RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTTF 61
           RL ID+R+LN+ T+ +RYP+P I  +   L  A  F+ +DL+SGYHQ+ + + D  KT+F
Sbjct: 238 RLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSF 297

Query: 62  RSRYGHYEFIVMSFGLTNAPTVFMDLMNRMFREFLDTFLIVFIDDILIYSKTEVEHEEHL 121
               G YEF  + FGL NA ++F   ++ + RE +     V++DD++I+S+ E +H  H+
Sbjct: 298 SVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHI 357

Query: 122 RMVLQTLQDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEV 181
             VL+ L D  +     K  F+ + V +LG +VSK G   DP K++A+  +P P  V +V
Sbjct: 358 DTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKV 417

Query: 182 RSFLGLAGYYRRFVENFSCIGTPLTQLTR 211
           RSFLGLA YYR F+++F+ I  P+T + +
Sbjct: 418 RSFLGLASYYRVFIKDFAAIARPITDILK 446

[Close]

BLAST of Cmc11g0303041 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.9e-43
Identity = 82/211 (38.86%), Postives = 131/211 (62.09%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTT 60
           +R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K  
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRMFREFLDTFLIVFIDDILIYSKTEVEHEEH 120
           FR   G +E++VM +G++ AP  F   +N +  E  ++ ++ ++DDILI+SK+E EH +H
Sbjct: 522 FRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581

Query: 121 LRMVLQTLQDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSE 180
           ++ VLQ L++  L    +KCEF   QV F+G+ +S+ G +     I+ V  W +P    E
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKE 641

Query: 181 VRSFLGLAGYYRRFVENFSCIGTPLTQLTRK 212
           +R FLG   Y R+F+   S +  PL  L +K
Sbjct: 642 LRQFLGSVNYLRKFIPKTSQLTHPLNNLLKK 672

[Close]

BLAST of Cmc11g0303041 vs. ExPASy TrEMBL
Match: A0A5A7TLA3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005990 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 3.9e-114
Identity = 206/216 (95.37%), Postives = 210/216 (97.22%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTT 60
           MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIK+GDVPKT 
Sbjct: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKNGDVPKTA 60

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRMFREFLDTFLIVFIDDILIYSKTEVEHEEH 120
           FRSRYGHYEFIVMSFGLTNAP VFMDLMNR+FREFLDTF+IVFIDDILIYSKTE EHEEH
Sbjct: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LRMVLQTLQDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSE 180
           LRMVLQTL+DNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW RPSTVSE
Sbjct: 121 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSE 180

Query: 181 VRSFLGLAGYYRRFVENFSCIGTPLTQLTRKGAPFV 217
           VRSFLGLAGYYRRFVENFS I TPLTQLTRKGAPFV
Sbjct: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 216

[Close]

BLAST of Cmc11g0303041 vs. ExPASy TrEMBL
Match: A0A5A7TXM6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold376G00490 PE=4 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 6.6e-114
Identity = 205/216 (94.91%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 1    MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTT 60
            MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKT 
Sbjct: 898  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 957

Query: 61   FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRMFREFLDTFLIVFIDDILIYSKTEVEHEEH 120
            FRSRYGHYEFIVMSFGLTNAP VFMDLMNR+FREFLDTF+IVFIDDILIYSKTE EHEEH
Sbjct: 958  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 1017

Query: 121  LRMVLQTLQDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSE 180
            LRMVLQTL+DNKLYAKFSKCEFWLKQVSFLGH+VSKAGVSVDPAKIEAVT W RPSTVSE
Sbjct: 1018 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHMVSKAGVSVDPAKIEAVTGWTRPSTVSE 1077

Query: 181  VRSFLGLAGYYRRFVENFSCIGTPLTQLTRKGAPFV 217
            VRSFLGLAGYYRRFVENFS I TPLTQLTRKGAPFV
Sbjct: 1078 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 1113

[Close]

BLAST of Cmc11g0303041 vs. ExPASy TrEMBL
Match: A0A5A7SUW2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00470 PE=4 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 6.6e-114
Identity = 205/216 (94.91%), Postives = 210/216 (97.22%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTT 60
           MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKT 
Sbjct: 388 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 447

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRMFREFLDTFLIVFIDDILIYSKTEVEHEEH 120
           FRSRYGHYEFIVMSFGLTNAPTVFMDLMNR+FREFLDTF+IVFIDDILIYSKTE EH+EH
Sbjct: 448 FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEH 507

Query: 121 LRMVLQTLQDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSE 180
           LR+VLQTL+DNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSE
Sbjct: 508 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 567

Query: 181 VRSFLGLAGYYRRFVENFSCIGTPLTQLTRKGAPFV 217
           VRSFLGLAGYYRRFVENFS I TPLTQLTRKGAPFV
Sbjct: 568 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 603

[Close]

BLAST of Cmc11g0303041 vs. ExPASy TrEMBL
Match: A0A5A7SPZ2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G002730 PE=4 SV=1)

HSP 1 Score: 419.5 bits (1077), Expect = 8.7e-114
Identity = 205/216 (94.91%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTT 60
           MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKT 
Sbjct: 191 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 250

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRMFREFLDTFLIVFIDDILIYSKTEVEHEEH 120
           FRSRYGHYEFIVMSFGLTNAP VFMDLMNR+FREFLDTF+IVFIDDILIYSKTE EHEEH
Sbjct: 251 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 310

Query: 121 LRMVLQTLQDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSE 180
           LR+VLQTL+DNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSE
Sbjct: 311 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 370

Query: 181 VRSFLGLAGYYRRFVENFSCIGTPLTQLTRKGAPFV 217
           VRSFLGLAGYYRRFVENFS I TPLTQLTRKGAPFV
Sbjct: 371 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 406

[Close]

BLAST of Cmc11g0303041 vs. ExPASy TrEMBL
Match: A0A5A7TV57 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00240 PE=4 SV=1)

HSP 1 Score: 419.5 bits (1077), Expect = 8.7e-114
Identity = 205/216 (94.91%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 1    MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTT 60
            MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKT 
Sbjct: 1105 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 1164

Query: 61   FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRMFREFLDTFLIVFIDDILIYSKTEVEHEEH 120
            FRSRYGHYEFIVMSFGLTNAP VFMDLMNR+FREFLDTF+IVFIDDILIYSKTE EHEEH
Sbjct: 1165 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 1224

Query: 121  LRMVLQTLQDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSE 180
            LR+VLQTL+DNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSE
Sbjct: 1225 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 1284

Query: 181  VRSFLGLAGYYRRFVENFSCIGTPLTQLTRKGAPFV 217
            VRSFLGLAGYYRRFVENFS I TPLTQLTRKGAPFV
Sbjct: 1285 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 1320

[Close]

BLAST of Cmc11g0303041 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 104.8 bits (260), Expect = 9.1e-23
Identity = 48/96 (50.00%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 120 HLRMVLQTLQDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTSWPRPST 179
           HL MVLQ  + ++ YA   KC F   Q+++LG  H++S  GVS DPAK+EA+  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 180 VSEVRSFLGLAGYYRRFVENFSCIGTPLTQLTRKGA 214
            +E+R FLGL GYYRRFV+N+  I  PLT+L +K +
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS 98

The following BLAST results are available for this feature:

BLAST of Cmc11g0303041 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042119.1	8.0e-114	95.37	pol protein [Cucumis melo var. makuwa]	[more]
KAA0046185.1	1.4e-113	94.91	pol protein [Cucumis melo var. makuwa]	[more]
KAA0033251.1	1.4e-113	94.91	pol protein [Cucumis melo var. makuwa]	[more]
KAA0026271.1	1.8e-113	94.91	pol protein [Cucumis melo var. makuwa]	[more]
KAA0047044.1	1.8e-113	94.91	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0303041 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	1.5e-49	40.48	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	6.1e-48	40.48	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	1.7e-45	38.76	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	2.0e-43	39.71	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P0CT41	5.9e-43	38.86	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc11g0303041 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TLA3	3.9e-114	95.37	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005990 PE...	[more]
A0A5A7TXM6	6.6e-114	94.91	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37...	[more]
A0A5A7SUW2	6.6e-114	94.91	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84...	[more]
A0A5A7SPZ2	8.7e-114	94.91	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G002730 PE...	[more]
A0A5A7TV57	8.7e-114	94.91	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Cmc11g0303041 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	9.1e-23	50.00	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..153 e-value: 1.8E-26 score: 93.0
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..154 score: 11.396994
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..79 e-value: 4.5E-67 score: 227.4
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..210
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..210
None	No IPR available	CDD	cd01647	RT_LTR	coord: 2..154 e-value: 2.77311E-81 score: 238.264
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 19..154 e-value: 4.5E-67 score: 227.4
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 164..216 e-value: 5.8E-18 score: 66.7
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0303041.1	Cmc11g0303041.1	mRNA