Cmc11g0303011 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0303011
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 24284049 .. 24284696 (+)
RNA-Seq Expression	Cmc11g0303011
Synteny	Cmc11g0303011

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCCAGCTGAGCTAAAGGAGCTGAAGGTGCAGTTACAGGAATTACTGGACAAGGGTTTTATTCGACCCAGTGTGTCACCTTGGGGAGCACCAGTGTTGTTTGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCGTTGACTACAGGGAGCTGAACAAGGTGACAGTTAAGAATCATTATCCCTTGCCCAGGATTGATCATTTGTTCGATCAGTTGCAAGAATCCACCGTCTTTTCTAAGATTGACCTGCGATCAGGCTACCACCAATTGAGGATCAGGGATAGTGATATTCCTAAGACCGCTTTCCGTTCCAGATATGGACATTACGAGTTCATTGTGATGTCTTTTGGGTTAACTAATGCTCTTGCGGTATTCATGGACTTGATGAACAGGGTGTTTAAGGATTTCTTAGACACGTTTGTCATAGTTTTCATTGATGACATTTTGATTTACTCCAAGACTGAGGCTAAGCATGAGGAGCATTTGCACCAGGTTTTGGAGACTCTTCGAGCTAATAAGATGTACGTCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGGTAACTTTTCTCGGCCACGTGGTTTCCAGTGAGGGAGTTTCTCTGAACCTAGCAAAGATCGAAGCGGTTACCAGTTGGCCTTGA

mRNA sequence

ATGGTTCCAGCTGAGCTAAAGGAGCTGAAGGTGCAGTTACAGGAATTACTGGACAAGGGTTTTATTCGACCCAGTGTGTCACCTTGGGGAGCACCAGTGTTGTTTGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCGTTGACTACAGGGAGCTGAACAAGGTGACAGTTAAGAATCATTATCCCTTGCCCAGGATTGATCATTTGTTCGATCAGTTGCAAGAATCCACCGTCTTTTCTAAGATTGACCTGCGATCAGGCTACCACCAATTGAGGATCAGGGATAGTGATATTCCTAAGACCGCTTTCCGTTCCAGATATGGACATTACGAGTTCATTGTGATGTCTTTTGGGTTAACTAATGCTCTTGCGGTATTCATGGACTTGATGAACAGGGTGTTTAAGGATTTCTTAGACACGTTTGTCATAGTTTTCATTGATGACATTTTGATTTACTCCAAGACTGAGGCTAAGCATGAGGAGCATTTGCACCAGGTTTTGGAGACTCTTCGAGCTAATAAGATGTACGTCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGGTAACTTTTCTCGGCCACGTGGTTTCCAGTGAGGGAGTTTCTCTGAACCTAGCAAAGATCGAAGCGGTTACCAGTTGGCCTTGA

Coding sequence (CDS)

ATGGTTCCAGCTGAGCTAAAGGAGCTGAAGGTGCAGTTACAGGAATTACTGGACAAGGGTTTTATTCGACCCAGTGTGTCACCTTGGGGAGCACCAGTGTTGTTTGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCGTTGACTACAGGGAGCTGAACAAGGTGACAGTTAAGAATCATTATCCCTTGCCCAGGATTGATCATTTGTTCGATCAGTTGCAAGAATCCACCGTCTTTTCTAAGATTGACCTGCGATCAGGCTACCACCAATTGAGGATCAGGGATAGTGATATTCCTAAGACCGCTTTCCGTTCCAGATATGGACATTACGAGTTCATTGTGATGTCTTTTGGGTTAACTAATGCTCTTGCGGTATTCATGGACTTGATGAACAGGGTGTTTAAGGATTTCTTAGACACGTTTGTCATAGTTTTCATTGATGACATTTTGATTTACTCCAAGACTGAGGCTAAGCATGAGGAGCATTTGCACCAGGTTTTGGAGACTCTTCGAGCTAATAAGATGTACGTCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGGTAACTTTTCTCGGCCACGTGGTTTCCAGTGAGGGAGTTTCTCTGAACCTAGCAAAGATCGAAGCGGTTACCAGTTGGCCTTGA

Protein sequence

MVPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCVDYRELNKVTVKNHYPLPRIDHLFDQLQESTVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNALAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLHQVLETLRANKMYVKFSKCEFWLKKVTFLGHVVSSEGVSLNLAKIEAVTSWP

Homology

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BLAST of Cmc11g0303011 vs. NCBI nr
Match: KAA0050727.1 (pol protein [Cucumis melo var. makuwa] >TYJ95692.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 408.3 bits (1048), Expect = 4.1e-110
Identity = 200/215 (93.02%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 1   MVPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCVDYRELNKVTVKNH 60
           M PAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLC+DYRELNK+TVKN 
Sbjct: 74  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKLTVKNR 133

Query: 61  YPLPRIDHLFDQLQESTVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRID LFDQLQE+TVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 134 YPLPRIDDLFDQLQEATVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT 193

Query: 121 NALAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLHQVLETLRANKMYVKFS 180
           NALAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEA+HEEHLHQVL TLRANK+Y KFS
Sbjct: 194 NALAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLVTLRANKLYAKFS 253

Query: 181 KCEFWLKKVTFLGHVVSSEGVSLNLAKIEAVTSWP 216
           KCEFWLKKVTFLGHVVSSEGVS++ AKIEAVT+WP
Sbjct: 254 KCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWP 288

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BLAST of Cmc11g0303011 vs. NCBI nr
Match: KAA0054665.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 408.3 bits (1048), Expect = 4.1e-110
Identity = 200/215 (93.02%), Postives = 210/215 (97.67%), Query Frame = 0


Query: 1   MVPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCVDYRELNKVTVKNH 60
           M PAELKELKVQLQEL +KGFIRPSVSP GAPVLFVKKKDGSMRLCVDYRELNKVTVKNH
Sbjct: 1   MAPAELKELKVQLQELFNKGFIRPSVSPSGAPVLFVKKKDGSMRLCVDYRELNKVTVKNH 60

Query: 61  YPLPRIDHLFDQLQESTVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT 120
           YPLP++DHLFD+LQE+TVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 61  YPLPKMDHLFDELQEATVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT 120

Query: 121 NALAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLHQVLETLRANKMYVKFS 180
           NALAVF+DLMN VFKDFLDTFVIVFIDDILIYSKTEA+HEEHLH+VLETLRANKMYVKFS
Sbjct: 121 NALAVFIDLMNMVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHRVLETLRANKMYVKFS 180

Query: 181 KCEFWLKKVTFLGHVVSSEGVSLNLAKIEAVTSWP 216
           KCEFWLKKVTFLGHV+SSEGVS+N AKIEAVTSWP
Sbjct: 181 KCEFWLKKVTFLGHVISSEGVSVNPAKIEAVTSWP 215

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BLAST of Cmc11g0303011 vs. NCBI nr
Match: TYK21950.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 406.8 bits (1044), Expect = 1.2e-109
Identity = 199/215 (92.56%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 1   MVPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCVDYRELNKVTVKNH 60
           M PAELKELKVQLQEL +KGFIRPSVSP GAPVLFVKKKDGSMRLCVDYRELNKVTVKNH
Sbjct: 1   MAPAELKELKVQLQELFNKGFIRPSVSPSGAPVLFVKKKDGSMRLCVDYRELNKVTVKNH 60

Query: 61  YPLPRIDHLFDQLQESTVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT 120
           YPLP++DHLFD+LQE+TVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 61  YPLPKMDHLFDELQEATVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT 120

Query: 121 NALAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLHQVLETLRANKMYVKFS 180
           NALAVF+DLMN VFKDFLDTFVIVFIDDILIYSKTEA+HEEHLH+VLETLRANKMYVKFS
Sbjct: 121 NALAVFIDLMNMVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHRVLETLRANKMYVKFS 180

Query: 181 KCEFWLKKVTFLGHVVSSEGVSLNLAKIEAVTSWP 216
           KCEFWLKKVTFLGHV+SSEGVS+N  KIEAVTSWP
Sbjct: 181 KCEFWLKKVTFLGHVISSEGVSVNPTKIEAVTSWP 215

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BLAST of Cmc11g0303011 vs. NCBI nr
Match: KAA0066101.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 406.4 bits (1043), Expect = 1.6e-109
Identity = 198/215 (92.09%), Postives = 208/215 (96.74%), Query Frame = 0


Query: 1   MVPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCVDYRELNKVTVKNH 60
           M PAELKE KVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLC+DYRELNKVT+KN 
Sbjct: 599 MAPAELKEFKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTIKNR 658

Query: 61  YPLPRIDHLFDQLQESTVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRID LFDQLQ +TVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 659 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT 718

Query: 121 NALAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLHQVLETLRANKMYVKFS 180
           NALAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEA+HEEHLHQVLETLRANK+Y KFS
Sbjct: 719 NALAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 778

Query: 181 KCEFWLKKVTFLGHVVSSEGVSLNLAKIEAVTSWP 216
           KCEFWLKKVTFLGHVVSS+GVS++ AKIEAVT+WP
Sbjct: 779 KCEFWLKKVTFLGHVVSSDGVSVDPAKIEAVTNWP 813

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BLAST of Cmc11g0303011 vs. NCBI nr
Match: KAA0039594.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 405.2 bits (1040), Expect = 3.5e-109
Identity = 199/215 (92.56%), Postives = 207/215 (96.28%), Query Frame = 0


Query: 1   MVPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCVDYRELNKVTVKNH 60
           M PAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGS+RLC+DYR+LNKVTVKN 
Sbjct: 486 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSIRLCIDYRKLNKVTVKNR 545

Query: 61  YPLPRIDHLFDQLQESTVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRID LFDQLQ STVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 546 YPLPRIDDLFDQLQGSTVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT 605

Query: 121 NALAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLHQVLETLRANKMYVKFS 180
           NA  VFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEA+HEEHLHQVLETLRANK+Y KFS
Sbjct: 606 NAPTVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 665

Query: 181 KCEFWLKKVTFLGHVVSSEGVSLNLAKIEAVTSWP 216
           KCEFWLKKVTFLGHVVSSEGVS+N AKIEAVT+WP
Sbjct: 666 KCEFWLKKVTFLGHVVSSEGVSVNPAKIEAVTNWP 700

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BLAST of Cmc11g0303011 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 174.1 bits (440), Expect = 1.7e-42
Identity = 90/209 (43.06%), Postives = 132/209 (63.16%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCVDYRELNKVTVKNHYPLPRI 66
           +E+   +Q+LLD  FI PS SP  +PV+ V KKDG+ RLCVDYR LNK T+ + +PLPRI
Sbjct: 610 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 669

Query: 67  DHLFDQLQESTVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNALAVF 126
           D+L  ++  + +F+ +DL SGYHQ+ +   D  KTAF +  G YE+ VM FGL NA + F
Sbjct: 670 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTF 729

Query: 127 MDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLHQVLETLRANKMYVKFSKCEFWL 186
              M   F+D    FV V++DDILI+S++  +H +HL  VLE L+   + VK  KC+F  
Sbjct: 730 ARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFAS 789

Query: 187 KKVTFLGHVVSSEGVSLNLAKIEAVTSWP 216
           ++  FLG+ +  + ++    K  A+  +P
Sbjct: 790 EETEFLGYSIGIQKIAPLQHKCAAIRDFP 816

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BLAST of Cmc11g0303011 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 174.1 bits (440), Expect = 1.7e-42
Identity = 90/209 (43.06%), Postives = 132/209 (63.16%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCVDYRELNKVTVKNHYPLPRI 66
           +E+   +Q+LLD  FI PS SP  +PV+ V KKDG+ RLCVDYR LNK T+ + +PLPRI
Sbjct: 636 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 695

Query: 67  DHLFDQLQESTVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNALAVF 126
           D+L  ++  + +F+ +DL SGYHQ+ +   D  KTAF +  G YE+ VM FGL NA + F
Sbjct: 696 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTF 755

Query: 127 MDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLHQVLETLRANKMYVKFSKCEFWL 186
              M   F+D    FV V++DDILI+S++  +H +HL  VLE L+   + VK  KC+F  
Sbjct: 756 ARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFAS 815

Query: 187 KKVTFLGHVVSSEGVSLNLAKIEAVTSWP 216
           ++  FLG+ +  + ++    K  A+  +P
Sbjct: 816 EETEFLGYSIGIQKIAPLQHKCAAIRDFP 842

[Close]

BLAST of Cmc11g0303011 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.2e-41
Identity = 81/214 (37.85%), Postives = 137/214 (64.02%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRPSVSPWGAPVLFV-KKKDGS----MRLCVDYRELNKVTVKNHY 66
           +E++ Q+Q++L++G IR S SP+ +P+  V KK+D S     R+ +DYR+LN++TV + +
Sbjct: 221 QEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRH 280

Query: 67  PLPRIDHLFDQLQESTVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTN 126
           P+P +D +  +L     F+ IDL  G+HQ+ +    + KTAF +++GHYE++ M FGL N
Sbjct: 281 PIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKN 340

Query: 127 ALAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLHQVLETLRANKMYVKFSK 186
           A A F   MN + +  L+   +V++DDI+++S +  +H + L  V E L    + ++  K
Sbjct: 341 APATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDK 400

Query: 187 CEFWLKKVTFLGHVVSSEGVSLNLAKIEAVTSWP 216
           CEF  ++ TFLGHV++ +G+  N  KIEA+  +P
Sbjct: 401 CEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYP 434

[Close]

BLAST of Cmc11g0303011 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.2e-40
Identity = 79/213 (37.09%), Postives = 131/213 (61.50%), Query Frame = 0


Query: 8   ELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD-----GSMRLCVDYRELNKVTVKNHYP 67
           E++ Q+QE+L++G IR S SP+ +P   V KK         R+ +DYR+LN++T+ + YP
Sbjct: 221 EVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYP 280

Query: 68  LPRIDHLFDQLQESTVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNA 127
           +P +D +  +L +   F+ IDL  G+HQ+ + +  I KTAF ++ GHYE++ M FGL NA
Sbjct: 281 IPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNA 340

Query: 128 LAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLHQVLETLRANKMYVKFSKC 187
            A F   MN + +  L+   +V++DDI+I+S +  +H   +  V   L    + ++  KC
Sbjct: 341 PATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKC 400

Query: 188 EFWLKKVTFLGHVVSSEGVSLNLAKIEAVTSWP 216
           EF  K+  FLGH+V+ +G+  N  K++A+ S+P
Sbjct: 401 EFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYP 433

[Close]

BLAST of Cmc11g0303011 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 8.0e-40
Identity = 79/212 (37.26%), Postives = 134/212 (63.21%), Query Frame = 0


Query: 3   PAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCVDYRELNKVTVKNHYP 62
           P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ VDY+ LNK    N YP
Sbjct: 422 PGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYP 481

Query: 63  LPRIDHLFDQLQESTVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNA 122
           LP I+ L  ++Q ST+F+K+DL+S YH +R+R  D  K AFR   G +E++VM +G++ A
Sbjct: 482 LPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTA 541

Query: 123 LAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLHQVLETLRANKMYVKFSKC 182
            A F   +N +  +  ++ V+ ++DDILI+SK+E++H +H+  VL+ L+   + +  +KC
Sbjct: 542 PAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKC 601

Query: 183 EFWLKKVTFLGHVVSSEGVSLNLAKIEAVTSW 215
           EF   +V F+G+ +S +G +     I+ V  W
Sbjct: 602 EFHQSQVKFIGYHISEKGFTPCQENIDKVLQW 633

[Close]

BLAST of Cmc11g0303011 vs. ExPASy TrEMBL
Match: A0A5D3B768 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00190 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 2.0e-110
Identity = 200/215 (93.02%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 1   MVPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCVDYRELNKVTVKNH 60
           M PAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLC+DYRELNK+TVKN 
Sbjct: 74  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKLTVKNR 133

Query: 61  YPLPRIDHLFDQLQESTVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRID LFDQLQE+TVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 134 YPLPRIDDLFDQLQEATVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT 193

Query: 121 NALAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLHQVLETLRANKMYVKFS 180
           NALAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEA+HEEHLHQVL TLRANK+Y KFS
Sbjct: 194 NALAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLVTLRANKLYAKFS 253

Query: 181 KCEFWLKKVTFLGHVVSSEGVSLNLAKIEAVTSWP 216
           KCEFWLKKVTFLGHVVSSEGVS++ AKIEAVT+WP
Sbjct: 254 KCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWP 288

[Close]

BLAST of Cmc11g0303011 vs. ExPASy TrEMBL
Match: A0A5A7ULW9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004830 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 2.0e-110
Identity = 200/215 (93.02%), Postives = 210/215 (97.67%), Query Frame = 0


Query: 1   MVPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCVDYRELNKVTVKNH 60
           M PAELKELKVQLQEL +KGFIRPSVSP GAPVLFVKKKDGSMRLCVDYRELNKVTVKNH
Sbjct: 1   MAPAELKELKVQLQELFNKGFIRPSVSPSGAPVLFVKKKDGSMRLCVDYRELNKVTVKNH 60

Query: 61  YPLPRIDHLFDQLQESTVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT 120
           YPLP++DHLFD+LQE+TVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 61  YPLPKMDHLFDELQEATVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT 120

Query: 121 NALAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLHQVLETLRANKMYVKFS 180
           NALAVF+DLMN VFKDFLDTFVIVFIDDILIYSKTEA+HEEHLH+VLETLRANKMYVKFS
Sbjct: 121 NALAVFIDLMNMVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHRVLETLRANKMYVKFS 180

Query: 181 KCEFWLKKVTFLGHVVSSEGVSLNLAKIEAVTSWP 216
           KCEFWLKKVTFLGHV+SSEGVS+N AKIEAVTSWP
Sbjct: 181 KCEFWLKKVTFLGHVISSEGVSVNPAKIEAVTSWP 215

[Close]

BLAST of Cmc11g0303011 vs. ExPASy TrEMBL
Match: A0A5D3DEY6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19476G00020 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 5.8e-110
Identity = 199/215 (92.56%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 1   MVPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCVDYRELNKVTVKNH 60
           M PAELKELKVQLQEL +KGFIRPSVSP GAPVLFVKKKDGSMRLCVDYRELNKVTVKNH
Sbjct: 1   MAPAELKELKVQLQELFNKGFIRPSVSPSGAPVLFVKKKDGSMRLCVDYRELNKVTVKNH 60

Query: 61  YPLPRIDHLFDQLQESTVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT 120
           YPLP++DHLFD+LQE+TVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 61  YPLPKMDHLFDELQEATVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT 120

Query: 121 NALAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLHQVLETLRANKMYVKFS 180
           NALAVF+DLMN VFKDFLDTFVIVFIDDILIYSKTEA+HEEHLH+VLETLRANKMYVKFS
Sbjct: 121 NALAVFIDLMNMVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHRVLETLRANKMYVKFS 180

Query: 181 KCEFWLKKVTFLGHVVSSEGVSLNLAKIEAVTSWP 216
           KCEFWLKKVTFLGHV+SSEGVS+N  KIEAVTSWP
Sbjct: 181 KCEFWLKKVTFLGHVISSEGVSVNPTKIEAVTSWP 215

[Close]

BLAST of Cmc11g0303011 vs. ExPASy TrEMBL
Match: A0A5A7VK60 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00930 PE=4 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 7.6e-110
Identity = 198/215 (92.09%), Postives = 208/215 (96.74%), Query Frame = 0


Query: 1   MVPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCVDYRELNKVTVKNH 60
           M PAELKE KVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLC+DYRELNKVT+KN 
Sbjct: 599 MAPAELKEFKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTIKNR 658

Query: 61  YPLPRIDHLFDQLQESTVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRID LFDQLQ +TVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 659 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT 718

Query: 121 NALAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLHQVLETLRANKMYVKFS 180
           NALAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEA+HEEHLHQVLETLRANK+Y KFS
Sbjct: 719 NALAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 778

Query: 181 KCEFWLKKVTFLGHVVSSEGVSLNLAKIEAVTSWP 216
           KCEFWLKKVTFLGHVVSS+GVS++ AKIEAVT+WP
Sbjct: 779 KCEFWLKKVTFLGHVVSSDGVSVDPAKIEAVTNWP 813

[Close]

BLAST of Cmc11g0303011 vs. ExPASy TrEMBL
Match: A0A5A7T804 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00700 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 1.7e-109
Identity = 199/215 (92.56%), Postives = 207/215 (96.28%), Query Frame = 0


Query: 1   MVPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCVDYRELNKVTVKNH 60
           M PAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGS+RLC+DYR+LNKVTVKN 
Sbjct: 486 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSIRLCIDYRKLNKVTVKNR 545

Query: 61  YPLPRIDHLFDQLQESTVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRID LFDQLQ STVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 546 YPLPRIDDLFDQLQGSTVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT 605

Query: 121 NALAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLHQVLETLRANKMYVKFS 180
           NA  VFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEA+HEEHLHQVLETLRANK+Y KFS
Sbjct: 606 NAPTVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 665

Query: 181 KCEFWLKKVTFLGHVVSSEGVSLNLAKIEAVTSWP 216
           KCEFWLKKVTFLGHVVSSEGVS+N AKIEAVT+WP
Sbjct: 666 KCEFWLKKVTFLGHVVSSEGVSVNPAKIEAVTNWP 700

[Close]

BLAST of Cmc11g0303011 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.0e-05
Identity = 22/56 (39.29%), Postives = 33/56 (58.93%), Query Frame = 0


Query: 162 HLHQVLETLRANKMYVKFSKCEFWLKKVTFLG--HVVSSEGVSLNLAKIEAVTSWP 216
           HL  VL+    ++ Y    KC F   ++ +LG  H++S EGVS + AK+EA+  WP
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWP 58

The following BLAST results are available for this feature:

BLAST of Cmc11g0303011 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050727.1	4.1e-110	93.02	pol protein [Cucumis melo var. makuwa] >TYJ95692.1 pol protein [Cucumis melo var...	[more]
KAA0054665.1	4.1e-110	93.02	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK21950.1	1.2e-109	92.56	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0066101.1	1.6e-109	92.09	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0039594.1	3.5e-109	92.56	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0303011 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	1.7e-42	43.06	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.7e-42	43.06	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P04323	3.2e-41	37.85	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	1.2e-40	37.09	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P0CT41	8.0e-40	37.26	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc11g0303011 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3B768	2.0e-110	93.02	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00190 PE...	[more]
A0A5A7ULW9	2.0e-110	93.02	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DEY6	5.8e-110	92.56	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VK60	7.6e-110	92.09	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]
A0A5A7T804	1.7e-109	92.56	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74...	[more]

BLAST of Cmc11g0303011 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.0e-05	39.29	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 36..195 e-value: 1.9E-27 score: 96.2
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 17..196 score: 9.552084
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 61..196 e-value: 8.7E-86 score: 288.6
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 2..121 e-value: 8.7E-86 score: 288.6
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 13..215
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 13..215
None	No IPR available	CDD	cd01647	RT_LTR	coord: 20..196 e-value: 7.55945E-95 score: 272.547
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 3..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0303011.1	Cmc11g0303011.1	mRNA