Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACAATCAATGTTGTGGTTAATGATTTTGAGTCTAATGTCAATCAGTTTAATATTGAGGATGATGAGATTCATGTTACACCTGATGTTACTTCTACTCCTCTTGATGAAATGCCTAAAGGTGATTCGCAGCCAGACAGTGCTAAGACCAATTCAAACATAGCTGATGAGGTCATAAACAATGAAACTGCGCTTGTCCCCTCTGCACATGTGAAAAAGAATCATCCTTCAAGTTCCATAATAGGCGATTCGTCAGCTGGAATCACCATCAGAAGAAAAGAAAAGGTAGATTACACGAAAATGATTGCTGATTTATGCTATGTGTCGACAATAGAACCTACATCTGTTGAGAATGCTCTCAAGGATGAATATTGGATAAATGTCATGCAGGAAGAGTTACTACAGTTCAAGCGTAACAACGTTTGGACTTTGGTTCCTAAACCTGATGGGGCAAACATCATAGAAACTAAGTGA
mRNA sequence
ATGGAAACAATCAATGTTGTGGTTAATGATTTTGAGTCTAATGTCAATCAGTTTAATATTGAGGATGATGAGATTCATGTTACACCTGATGTTACTTCTACTCCTCTTGATGAAATGCCTAAAGGTGATTCGCAGCCAGACAGTGCTAAGACCAATTCAAACATAGCTGATGAGGTCATAAACAATGAAACTGCGCTTGTCCCCTCTGCACATGTGAAAAAGAATCATCCTTCAAGTTCCATAATAGGCGATTCGTCAGCTGGAATCACCATCAGAAGAAAAGAAAAGGTAGATTACACGAAAATGATTGCTGATTTATGCTATGTGTCGACAATAGAACCTACATCTGTTGAGAATGCTCTCAAGGATGAATATTGGATAAATGTCATGCAGGAAGAGTTACTACAGTTCAAGCGTAACAACGTTTGGACTTTGGTTCCTAAACCTGATGGGGCAAACATCATAGAAACTAAGTGA
Coding sequence (CDS)
ATGGAAACAATCAATGTTGTGGTTAATGATTTTGAGTCTAATGTCAATCAGTTTAATATTGAGGATGATGAGATTCATGTTACACCTGATGTTACTTCTACTCCTCTTGATGAAATGCCTAAAGGTGATTCGCAGCCAGACAGTGCTAAGACCAATTCAAACATAGCTGATGAGGTCATAAACAATGAAACTGCGCTTGTCCCCTCTGCACATGTGAAAAAGAATCATCCTTCAAGTTCCATAATAGGCGATTCGTCAGCTGGAATCACCATCAGAAGAAAAGAAAAGGTAGATTACACGAAAATGATTGCTGATTTATGCTATGTGTCGACAATAGAACCTACATCTGTTGAGAATGCTCTCAAGGATGAATATTGGATAAATGTCATGCAGGAAGAGTTACTACAGTTCAAGCGTAACAACGTTTGGACTTTGGTTCCTAAACCTGATGGGGCAAACATCATAGAAACTAAGTGA
Protein sequence
METINVVVNDFESNVNQFNIEDDEIHVTPDVTSTPLDEMPKGDSQPDSAKTNSNIADEVINNETALVPSAHVKKNHPSSSIIGDSSAGITIRRKEKVDYTKMIADLCYVSTIEPTSVENALKDEYWINVMQEELLQFKRNNVWTLVPKPDGANIIETK
Homology
BLAST of Cmc11g0302731 vs. NCBI nr
Match:
KAA0054623.1 (putative mitochondrial protein [Cucumis melo var. makuwa])
HSP 1 Score: 298.9 bits (764), Expect = 2.6e-77
Identity = 152/158 (96.20%), Postives = 152/158 (96.20%), Query Frame = 0
Query: 1 METINVVVNDFESNVNQFNIEDDEIHVTPDVTSTPLDEMPKGDSQPDSAKTNSNIADEVI 60
METINVVVNDFESNVNQFNIEDDE HVTPDVTSTPLDEMPKGDSQPDSAKTNSNIADEVI
Sbjct: 329 METINVVVNDFESNVNQFNIEDDETHVTPDVTSTPLDEMPKGDSQPDSAKTNSNIADEVI 388
Query: 61 NNETALVPSAHVKKNHPSSSIIGDSSAGITIRRKEKVDYTKMIADLCYVSTIEPTSVENA 120
NNET LVPSAHVKKNHPSSSIIGDSSAGIT RRKEKVDYTKMIADLCYV TIEPT VENA
Sbjct: 389 NNETVLVPSAHVKKNHPSSSIIGDSSAGITTRRKEKVDYTKMIADLCYVPTIEPTPVENA 448
Query: 121 LKDEYWINVMQEELLQFKRNNVWTLVPKPDGANIIETK 159
LKDEYWINVMQEELLQFKRNNV TLVPKPDGANIIETK
Sbjct: 449 LKDEYWINVMQEELLQFKRNNVCTLVPKPDGANIIETK 486
BLAST of Cmc11g0302731 vs. NCBI nr
Match:
TYK27585.1 (putative mitochondrial protein [Cucumis melo var. makuwa])
HSP 1 Score: 298.9 bits (764), Expect = 2.6e-77
Identity = 152/158 (96.20%), Postives = 152/158 (96.20%), Query Frame = 0
Query: 1 METINVVVNDFESNVNQFNIEDDEIHVTPDVTSTPLDEMPKGDSQPDSAKTNSNIADEVI 60
METINVVVNDFESNVNQFNIEDDE HVTPDVTSTPLDEMPKGDSQPDSAKTNSNIADEVI
Sbjct: 329 METINVVVNDFESNVNQFNIEDDETHVTPDVTSTPLDEMPKGDSQPDSAKTNSNIADEVI 388
Query: 61 NNETALVPSAHVKKNHPSSSIIGDSSAGITIRRKEKVDYTKMIADLCYVSTIEPTSVENA 120
NNET LVPSAHVKKNHPSSSIIGDSSAGIT RRKEKVDYTKMIADLCYV TIEPT VENA
Sbjct: 389 NNETVLVPSAHVKKNHPSSSIIGDSSAGITTRRKEKVDYTKMIADLCYVPTIEPTPVENA 448
Query: 121 LKDEYWINVMQEELLQFKRNNVWTLVPKPDGANIIETK 159
LKDEYWINVMQEELLQFKRNNV TLVPKPDGANIIETK
Sbjct: 449 LKDEYWINVMQEELLQFKRNNVCTLVPKPDGANIIETK 486
BLAST of Cmc11g0302731 vs. NCBI nr
Match:
KAA0045248.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK19274.1 gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 285.0 bits (728), Expect = 3.9e-73
Identity = 143/158 (90.51%), Postives = 145/158 (91.77%), Query Frame = 0
Query: 1 METINVVVNDFESNVNQFNIEDDEIHVTPDVTSTPLDEMPKGDSQPDSAKTNSNIADEVI 60
ME INVVVNDFESNVNQFNIEDDE HVTPDVT TPLDEMPKGD QPDSAKTNSNI DEVI
Sbjct: 604 MEKINVVVNDFESNVNQFNIEDDETHVTPDVTYTPLDEMPKGDLQPDSAKTNSNITDEVI 663
Query: 61 NNETALVPSAHVKKNHPSSSIIGDSSAGITIRRKEKVDYTKMIADLCYVSTIEPTSVENA 120
NNET L+PSAHVKKNHPSSSIIGD S GIT RRKEKVDY KMIADLCYVS IEPTSVENA
Sbjct: 664 NNETVLIPSAHVKKNHPSSSIIGDPSTGITTRRKEKVDYAKMIADLCYVSAIEPTSVENA 723
Query: 121 LKDEYWINVMQEELLQFKRNNVWTLVPKPDGANIIETK 159
LKDEYWINVMQEELLQFK N+VWTLVPKPDGANII TK
Sbjct: 724 LKDEYWINVMQEELLQFKHNSVWTLVPKPDGANIIGTK 761
BLAST of Cmc11g0302731 vs. NCBI nr
Match:
TYK19345.1 (F5J5.1 [Cucumis melo var. makuwa])
HSP 1 Score: 283.1 bits (723), Expect = 1.5e-72
Identity = 142/158 (89.87%), Postives = 145/158 (91.77%), Query Frame = 0
Query: 1 METINVVVNDFESNVNQFNIEDDEIHVTPDVTSTPLDEMPKGDSQPDSAKTNSNIADEVI 60
METINVVVNDFESNVNQFNIEDDE HVTPDVTSTPLDEMPKGDSQPD+AKT+S I DEVI
Sbjct: 649 METINVVVNDFESNVNQFNIEDDETHVTPDVTSTPLDEMPKGDSQPDNAKTDSTITDEVI 708
Query: 61 NNETALVPSAHVKKNHPSSSIIGDSSAGITIRRKEKVDYTKMIADLCYVSTIEPTSVENA 120
NNET LVPSAHVKKNHPSSS+IGD SAGIT RRKEKVDYTKMIADLCYVS IEPTS EN
Sbjct: 709 NNETVLVPSAHVKKNHPSSSMIGDPSAGITTRRKEKVDYTKMIADLCYVSAIEPTSFENT 768
Query: 121 LKDEYWINVMQEELLQFKRNNVWTLVPKPDGANIIETK 159
LKDEYWIN MQEELLQFK NNVWTLVPKPD ANII TK
Sbjct: 769 LKDEYWINAMQEELLQFKHNNVWTLVPKPDEANIIGTK 806
BLAST of Cmc11g0302731 vs. NCBI nr
Match:
KAA0059174.1 (F5J5.1 [Cucumis melo var. makuwa])
HSP 1 Score: 283.1 bits (723), Expect = 1.5e-72
Identity = 142/158 (89.87%), Postives = 145/158 (91.77%), Query Frame = 0
Query: 1 METINVVVNDFESNVNQFNIEDDEIHVTPDVTSTPLDEMPKGDSQPDSAKTNSNIADEVI 60
METINVVVNDFESNVNQFNIEDDE HVTPDVTSTPLDEMPKGDSQPD+AKT+S I DEVI
Sbjct: 649 METINVVVNDFESNVNQFNIEDDETHVTPDVTSTPLDEMPKGDSQPDNAKTDSTITDEVI 708
Query: 61 NNETALVPSAHVKKNHPSSSIIGDSSAGITIRRKEKVDYTKMIADLCYVSTIEPTSVENA 120
NNET LVPSAHVKKNHPSSS+IGD SAGIT RRKEKVDYTKMIADLCYVS IEPTS EN
Sbjct: 709 NNETVLVPSAHVKKNHPSSSMIGDPSAGITTRRKEKVDYTKMIADLCYVSAIEPTSFENT 768
Query: 121 LKDEYWINVMQEELLQFKRNNVWTLVPKPDGANIIETK 159
LKDEYWIN MQEELLQFK NNVWTLVPKPD ANII TK
Sbjct: 769 LKDEYWINAMQEELLQFKHNNVWTLVPKPDEANIIGTK 806
BLAST of Cmc11g0302731 vs. ExPASy Swiss-Prot
Match:
P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)
HSP 1 Score: 47.4 bits (111), Expect = 1.8e-04
Identity = 24/46 (52.17%), Postives = 25/46 (54.35%), Query Frame = 0
Query: 113 EPTSVENALKDEYWINVMQEELLQFKRNNVWTLVPKPDGANIIETK 159
EP SV ALKD W MQEEL RN W LVP P NI+ K
Sbjct: 27 EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCK 72
BLAST of Cmc11g0302731 vs. ExPASy TrEMBL
Match:
A0A5D3DWA8 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00610 PE=4 SV=1)
HSP 1 Score: 298.9 bits (764), Expect = 1.3e-77
Identity = 152/158 (96.20%), Postives = 152/158 (96.20%), Query Frame = 0
Query: 1 METINVVVNDFESNVNQFNIEDDEIHVTPDVTSTPLDEMPKGDSQPDSAKTNSNIADEVI 60
METINVVVNDFESNVNQFNIEDDE HVTPDVTSTPLDEMPKGDSQPDSAKTNSNIADEVI
Sbjct: 329 METINVVVNDFESNVNQFNIEDDETHVTPDVTSTPLDEMPKGDSQPDSAKTNSNIADEVI 388
Query: 61 NNETALVPSAHVKKNHPSSSIIGDSSAGITIRRKEKVDYTKMIADLCYVSTIEPTSVENA 120
NNET LVPSAHVKKNHPSSSIIGDSSAGIT RRKEKVDYTKMIADLCYV TIEPT VENA
Sbjct: 389 NNETVLVPSAHVKKNHPSSSIIGDSSAGITTRRKEKVDYTKMIADLCYVPTIEPTPVENA 448
Query: 121 LKDEYWINVMQEELLQFKRNNVWTLVPKPDGANIIETK 159
LKDEYWINVMQEELLQFKRNNV TLVPKPDGANIIETK
Sbjct: 449 LKDEYWINVMQEELLQFKRNNVCTLVPKPDGANIIETK 486
BLAST of Cmc11g0302731 vs. ExPASy TrEMBL
Match:
A0A5A7UF87 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004260 PE=4 SV=1)
HSP 1 Score: 298.9 bits (764), Expect = 1.3e-77
Identity = 152/158 (96.20%), Postives = 152/158 (96.20%), Query Frame = 0
Query: 1 METINVVVNDFESNVNQFNIEDDEIHVTPDVTSTPLDEMPKGDSQPDSAKTNSNIADEVI 60
METINVVVNDFESNVNQFNIEDDE HVTPDVTSTPLDEMPKGDSQPDSAKTNSNIADEVI
Sbjct: 329 METINVVVNDFESNVNQFNIEDDETHVTPDVTSTPLDEMPKGDSQPDSAKTNSNIADEVI 388
Query: 61 NNETALVPSAHVKKNHPSSSIIGDSSAGITIRRKEKVDYTKMIADLCYVSTIEPTSVENA 120
NNET LVPSAHVKKNHPSSSIIGDSSAGIT RRKEKVDYTKMIADLCYV TIEPT VENA
Sbjct: 389 NNETVLVPSAHVKKNHPSSSIIGDSSAGITTRRKEKVDYTKMIADLCYVPTIEPTPVENA 448
Query: 121 LKDEYWINVMQEELLQFKRNNVWTLVPKPDGANIIETK 159
LKDEYWINVMQEELLQFKRNNV TLVPKPDGANIIETK
Sbjct: 449 LKDEYWINVMQEELLQFKRNNVCTLVPKPDGANIIETK 486
BLAST of Cmc11g0302731 vs. ExPASy TrEMBL
Match:
A0A5A7TQU8 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1493G00830 PE=4 SV=1)
HSP 1 Score: 285.0 bits (728), Expect = 1.9e-73
Identity = 143/158 (90.51%), Postives = 145/158 (91.77%), Query Frame = 0
Query: 1 METINVVVNDFESNVNQFNIEDDEIHVTPDVTSTPLDEMPKGDSQPDSAKTNSNIADEVI 60
ME INVVVNDFESNVNQFNIEDDE HVTPDVT TPLDEMPKGD QPDSAKTNSNI DEVI
Sbjct: 604 MEKINVVVNDFESNVNQFNIEDDETHVTPDVTYTPLDEMPKGDLQPDSAKTNSNITDEVI 663
Query: 61 NNETALVPSAHVKKNHPSSSIIGDSSAGITIRRKEKVDYTKMIADLCYVSTIEPTSVENA 120
NNET L+PSAHVKKNHPSSSIIGD S GIT RRKEKVDY KMIADLCYVS IEPTSVENA
Sbjct: 664 NNETVLIPSAHVKKNHPSSSIIGDPSTGITTRRKEKVDYAKMIADLCYVSAIEPTSVENA 723
Query: 121 LKDEYWINVMQEELLQFKRNNVWTLVPKPDGANIIETK 159
LKDEYWINVMQEELLQFK N+VWTLVPKPDGANII TK
Sbjct: 724 LKDEYWINVMQEELLQFKHNSVWTLVPKPDGANIIGTK 761
BLAST of Cmc11g0302731 vs. ExPASy TrEMBL
Match:
A0A5D3D755 (F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold295G00660 PE=4 SV=1)
HSP 1 Score: 283.1 bits (723), Expect = 7.1e-73
Identity = 142/158 (89.87%), Postives = 145/158 (91.77%), Query Frame = 0
Query: 1 METINVVVNDFESNVNQFNIEDDEIHVTPDVTSTPLDEMPKGDSQPDSAKTNSNIADEVI 60
METINVVVNDFESNVNQFNIEDDE HVTPDVTSTPLDEMPKGDSQPD+AKT+S I DEVI
Sbjct: 649 METINVVVNDFESNVNQFNIEDDETHVTPDVTSTPLDEMPKGDSQPDNAKTDSTITDEVI 708
Query: 61 NNETALVPSAHVKKNHPSSSIIGDSSAGITIRRKEKVDYTKMIADLCYVSTIEPTSVENA 120
NNET LVPSAHVKKNHPSSS+IGD SAGIT RRKEKVDYTKMIADLCYVS IEPTS EN
Sbjct: 709 NNETVLVPSAHVKKNHPSSSMIGDPSAGITTRRKEKVDYTKMIADLCYVSAIEPTSFENT 768
Query: 121 LKDEYWINVMQEELLQFKRNNVWTLVPKPDGANIIETK 159
LKDEYWIN MQEELLQFK NNVWTLVPKPD ANII TK
Sbjct: 769 LKDEYWINAMQEELLQFKHNNVWTLVPKPDEANIIGTK 806
BLAST of Cmc11g0302731 vs. ExPASy TrEMBL
Match:
A0A5A7UVR7 (F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001010 PE=4 SV=1)
HSP 1 Score: 283.1 bits (723), Expect = 7.1e-73
Identity = 142/158 (89.87%), Postives = 145/158 (91.77%), Query Frame = 0
Query: 1 METINVVVNDFESNVNQFNIEDDEIHVTPDVTSTPLDEMPKGDSQPDSAKTNSNIADEVI 60
METINVVVNDFESNVNQFNIEDDE HVTPDVTSTPLDEMPKGDSQPD+AKT+S I DEVI
Sbjct: 649 METINVVVNDFESNVNQFNIEDDETHVTPDVTSTPLDEMPKGDSQPDNAKTDSTITDEVI 708
Query: 61 NNETALVPSAHVKKNHPSSSIIGDSSAGITIRRKEKVDYTKMIADLCYVSTIEPTSVENA 120
NNET LVPSAHVKKNHPSSS+IGD SAGIT RRKEKVDYTKMIADLCYVS IEPTS EN
Sbjct: 709 NNETVLVPSAHVKKNHPSSSMIGDPSAGITTRRKEKVDYTKMIADLCYVSAIEPTSFENT 768
Query: 121 LKDEYWINVMQEELLQFKRNNVWTLVPKPDGANIIETK 159
LKDEYWIN MQEELLQFK NNVWTLVPKPD ANII TK
Sbjct: 769 LKDEYWINAMQEELLQFKHNNVWTLVPKPDEANIIGTK 806
BLAST of Cmc11g0302731 vs. TAIR 10
Match:
ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )
HSP 1 Score: 47.4 bits (111), Expect = 1.3e-05
Identity = 24/46 (52.17%), Postives = 25/46 (54.35%), Query Frame = 0
Query: 113 EPTSVENALKDEYWINVMQEELLQFKRNNVWTLVPKPDGANIIETK 159
EP SV ALKD W MQEEL RN W LVP P NI+ K
Sbjct: 27 EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCK 72
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0054623.1 | 2.6e-77 | 96.20 | putative mitochondrial protein [Cucumis melo var. makuwa] | [more] |
| TYK27585.1 | 2.6e-77 | 96.20 | putative mitochondrial protein [Cucumis melo var. makuwa] | [more] |
| KAA0045248.1 | 3.9e-73 | 90.51 | gag-pol polyprotein [Cucumis melo var. makuwa] >TYK19274.1 gag-pol polyprotein [... | [more] |
| TYK19345.1 | 1.5e-72 | 89.87 | F5J5.1 [Cucumis melo var. makuwa] | [more] |
| KAA0059174.1 | 1.5e-72 | 89.87 | F5J5.1 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| P92520 | 1.8e-04 | 52.17 | Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DWA8 | 1.3e-77 | 96.20 | Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
| A0A5A7UF87 | 1.3e-77 | 96.20 | Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... | [more] |
| A0A5A7TQU8 | 1.9e-73 | 90.51 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1493... | [more] |
| A0A5D3D755 | 7.1e-73 | 89.87 | F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold295G00660 PE=4 SV... | [more] |
| A0A5A7UVR7 | 7.1e-73 | 89.87 | F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001010 PE=4 S... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| ATMG00820.1 | 1.3e-05 | 52.17 | Reverse transcriptase (RNA-dependent DNA polymerase) | [more] |
