Cmc11g0302721 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0302721
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr11: 23797933 .. 23798709 (-)
RNA-Seq Expression	Cmc11g0302721
Synteny	Cmc11g0302721

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATCTTGGTGAAAGAGGATATTCCAGGGGTGAGACTGACAAGACACTACTCATAAATAGAACCAGCACTGATCTCATCGTAGCTCAAATTTATGTTGATGACATCATCTTTGGTGGATTTCCTAAAACACTTGTTAATAATTTTATTAACATAATGAAATCAGAATTCGAAATGAGCCTAGTAGGTGAACTGTCTTGCTTTCTGGGGTTGCAGATCAAACAGAGAAGTGAGGGAATGTTTATATCACAAGAGAAGTATGCCAAGAACTTAGTTAAGAAGTTTGGTCTGGATCAGTCACAGTACAAAAGGACTCCAGCTGCGACTCATGCTAAAATTACCAAGGATACGGTAGGTACTACAGTCGATCATAAATTGTACAGAAGCATGATTGGAAGCCATTTATATTTGAAAGCAAGCAGACCTGATATTGCTTATGCTGTGGGAATATGTGCTCGGTATCAGTCAGATCCATGTACCTCTCATTTAAATGCTTTTAAACGAATAATAAAATATGTTCACGGAACAACTGATTTCGGGATTCTGTACTCCTACGATACATTCTCTGAGCTGGTGGGATATTGTGATGCAGACTGGGCAGGTTCTGCTGATGATCGGAAAAGCAGTTCTGGTGGATGTTTCTTTCTTGGGAATAATCTTGTTTCATGGTTCAGTAAGAAACAAAATTGTGTATCTCTATCGACAACAGAAGTGGAGTATATAACTGCAGGGAGTAGGTGTACTCAAATGATATGGATGAAAAATATGTTGAATTAA

mRNA sequence

ATGTATCTTGGTGAAAGAGGATATTCCAGGGGTGAGACTGACAAGACACTACTCATAAATAGAACCAGCACTGATCTCATCGTAGCTCAAATTTATGTTGATGACATCATCTTTGGTGGATTTCCTAAAACACTTGTTAATAATTTTATTAACATAATGAAATCAGAATTCGAAATGAGCCTAGTAGGTGAACTGTCTTGCTTTCTGGGGTTGCAGATCAAACAGAGAAGTGAGGGAATGTTTATATCACAAGAGAAGTATGCCAAGAACTTAGTTAAGAAGTTTGGTCTGGATCAGTCACAGTACAAAAGGACTCCAGCTGCGACTCATGCTAAAATTACCAAGGATACGGTAGGTACTACAGTCGATCATAAATTGTACAGAAGCATGATTGGAAGCCATTTATATTTGAAAGCAAGCAGACCTGATATTGCTTATGCTGTGGGAATATGTGCTCGGTATCAGTCAGATCCATGTACCTCTCATTTAAATGCTTTTAAACGAATAATAAAATATGTTCACGGAACAACTGATTTCGGGATTCTGTACTCCTACGATACATTCTCTGAGCTGGTGGGATATTGTGATGCAGACTGGGCAGGTTCTGCTGATGATCGGAAAAGCAGTTCTGGTGGATGTTTCTTTCTTGGGAATAATCTTGTTTCATGGTTCAGTAAGAAACAAAATTGTGTATCTCTATCGACAACAGAAGTGGAGTATATAACTGCAGGGAGTAGGTGTACTCAAATGATATGGATGAAAAATATGTTGAATTAA

Coding sequence (CDS)

ATGTATCTTGGTGAAAGAGGATATTCCAGGGGTGAGACTGACAAGACACTACTCATAAATAGAACCAGCACTGATCTCATCGTAGCTCAAATTTATGTTGATGACATCATCTTTGGTGGATTTCCTAAAACACTTGTTAATAATTTTATTAACATAATGAAATCAGAATTCGAAATGAGCCTAGTAGGTGAACTGTCTTGCTTTCTGGGGTTGCAGATCAAACAGAGAAGTGAGGGAATGTTTATATCACAAGAGAAGTATGCCAAGAACTTAGTTAAGAAGTTTGGTCTGGATCAGTCACAGTACAAAAGGACTCCAGCTGCGACTCATGCTAAAATTACCAAGGATACGGTAGGTACTACAGTCGATCATAAATTGTACAGAAGCATGATTGGAAGCCATTTATATTTGAAAGCAAGCAGACCTGATATTGCTTATGCTGTGGGAATATGTGCTCGGTATCAGTCAGATCCATGTACCTCTCATTTAAATGCTTTTAAACGAATAATAAAATATGTTCACGGAACAACTGATTTCGGGATTCTGTACTCCTACGATACATTCTCTGAGCTGGTGGGATATTGTGATGCAGACTGGGCAGGTTCTGCTGATGATCGGAAAAGCAGTTCTGGTGGATGTTTCTTTCTTGGGAATAATCTTGTTTCATGGTTCAGTAAGAAACAAAATTGTGTATCTCTATCGACAACAGAAGTGGAGTATATAACTGCAGGGAGTAGGTGTACTCAAATGATATGGATGAAAAATATGTTGAATTAA

Protein sequence

MYLGERGYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMKSEFEMSLVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGTTVDHKLYRSMIGSHLYLKASRPDIAYAVGICARYQSDPCTSHLNAFKRIIKYVHGTTDFGILYSYDTFSELVGYCDADWAGSADDRKSSSGGCFFLGNNLVSWFSKKQNCVSLSTTEVEYITAGSRCTQMIWMKNMLN

Homology

[Close]

BLAST of Cmc11g0302721 vs. NCBI nr
Match: KAA0054623.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 510.4 bits (1313), Expect = 9.2e-141
Identity = 250/258 (96.90%), Postives = 254/258 (98.45%), Query Frame = 0


Query: 1   MYLGERGYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMKSEFEMS 60
           MYLGERGYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIM SEFEMS
Sbjct: 562 MYLGERGYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMTSEFEMS 621

Query: 61  LVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGT 120
           LVGELSCFLGLQIKQRSEGMF+SQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGT
Sbjct: 622 LVGELSCFLGLQIKQRSEGMFMSQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGT 681

Query: 121 TVDHKLYRSMIGSHLYLKASRPDIAYAVGICARYQSDPCTSHLNAFKRIIKYVHGTTDFG 180
            VDHKLYRSMIGSHLYLKASRPDIAYAV ICARYQSDPCTSHLNA KRIIKYVHGTTDFG
Sbjct: 682 AVDHKLYRSMIGSHLYLKASRPDIAYAVEICARYQSDPCTSHLNAVKRIIKYVHGTTDFG 741

Query: 181 ILYSYDTFSELVGYCDADWAGSADDRKSSSGGCFFLGNNLVSWFSKKQNCVSLSTTEVEY 240
           ILYSYDTFS+LVGYCDADWAGSADDRKS+SGGCFFLGNNLVSWFSKKQNCVSLSTTEVEY
Sbjct: 742 ILYSYDTFSKLVGYCDADWAGSADDRKSTSGGCFFLGNNLVSWFSKKQNCVSLSTTEVEY 801

Query: 241 ITAGSRCTQMIWMKNMLN 259
           ITAGSRCTQMIWMKNML+
Sbjct: 802 ITAGSRCTQMIWMKNMLH 819

[Close]

BLAST of Cmc11g0302721 vs. NCBI nr
Match: KAA0031683.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK04427.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 459.9 bits (1182), Expect = 1.4e-125
Identity = 227/256 (88.67%), Postives = 235/256 (91.80%), Query Frame = 0


Query: 1   MYLGERGYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMKSEFEMS 60
           MYLGERGYSRGETDKTL IN+TSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMKSEFEMS
Sbjct: 223 MYLGERGYSRGETDKTLFINKTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMKSEFEMS 282

Query: 61  LVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGT 120
           LVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGL QSQYK+TPAATH KITKDT+GT
Sbjct: 283 LVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLYQSQYKKTPAATHTKITKDTIGT 342

Query: 121 TVDHKLYRSMIGSHLYLKASRPDIAYAVGICARYQSDPCTSHLNAFKRIIKYVHGTTDFG 180
            VDHKLYRSMIGS LYL AS PDI YAVGIC RYQSDP TSHLNA KRIIKYVHGTTDF 
Sbjct: 343 AVDHKLYRSMIGSLLYLIASIPDIDYAVGICVRYQSDPRTSHLNAVKRIIKYVHGTTDFR 402

Query: 181 ILYSYDTFSELVGYCDADWAGSADDRKSSSGGCFFLGNNLVSWFSKKQNCVSLSTTEVEY 240
           ILYSYDT S+LVGYCDA W GSADDRK++ GGCFFLGNNLVSWFSKKQNCV LS+ E EY
Sbjct: 403 ILYSYDTSSKLVGYCDAGWEGSADDRKNTFGGCFFLGNNLVSWFSKKQNCVPLSSAEAEY 462

Query: 241 ITAGSRCTQMIWMKNM 257
           I AG+ CTQMIWMKNM
Sbjct: 463 IVAGNGCTQMIWMKNM 478

[Close]

BLAST of Cmc11g0302721 vs. NCBI nr
Match: XP_016901935.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo])

HSP 1 Score: 416.0 bits (1068), Expect = 2.4e-112
Identity = 205/212 (96.70%), Postives = 208/212 (98.11%), Query Frame = 0


Query: 1   MYLGERGYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMKSEFEMS 60
           MYLGERGYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIM SEFEMS
Sbjct: 1   MYLGERGYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMTSEFEMS 60

Query: 61  LVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGT 120
           LVGELSCFLGLQIKQRSEGMF+SQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGT
Sbjct: 61  LVGELSCFLGLQIKQRSEGMFMSQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGT 120

Query: 121 TVDHKLYRSMIGSHLYLKASRPDIAYAVGICARYQSDPCTSHLNAFKRIIKYVHGTTDFG 180
            VDHKLYRSMIGSHLYLKASRPDIAYAV ICARYQSDPCTSHLNA KRIIKYVHGTTDFG
Sbjct: 121 AVDHKLYRSMIGSHLYLKASRPDIAYAVEICARYQSDPCTSHLNAVKRIIKYVHGTTDFG 180

Query: 181 ILYSYDTFSELVGYCDADWAGSADDRKSSSGG 213
           ILYSYDTFS+LVGYCDADWAGSADDRKS+SGG
Sbjct: 181 ILYSYDTFSKLVGYCDADWAGSADDRKSTSGG 212

[Close]

BLAST of Cmc11g0302721 vs. NCBI nr
Match: TYK23188.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 404.1 bits (1037), Expect = 9.3e-109
Identity = 192/258 (74.42%), Postives = 222/258 (86.05%), Query Frame = 0


Query: 1   MYLGERGYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMKSEFEMS 60
           +YL  +GYSRGE DKTL I+R S  L+VAQIYVDDIIFGGFP  LVNNFINIM+SEFEMS
Sbjct: 56  VYLRGKGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFGGFPHDLVNNFINIMQSEFEMS 115

Query: 61  LVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGT 120
           +VGELSCFLG QIKQ+++ + ISQ+KYAKN+ KKFGL+Q++ KRTPAATH K+T+D  G 
Sbjct: 116 MVGELSCFLGFQIKQKNDDIIISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGA 175

Query: 121 TVDHKLYRSMIGSHLYLKASRPDIAYAVGICARYQSDPCTSHLNAFKRIIKYVHGTTDFG 180
            VDHKLYRS++ + LYL ASRPDIAYAVGICARYQ+DP  SHL A KRI+KYVHGT DFG
Sbjct: 176 EVDHKLYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFG 235

Query: 181 ILYSYDTFSELVGYCDADWAGSADDRKSSSGGCFFLGNNLVSWFSKKQNCVSLSTTEVEY 240
           ++YSYDT   LVGYCDADWAG ADDRKS+SGGCFFLGNNL+ W SKKQNCVSLSTTE EY
Sbjct: 236 MMYSYDTTPTLVGYCDADWAGLADDRKSTSGGCFFLGNNLIYWLSKKQNCVSLSTTEAEY 295

Query: 241 ITAGSRCTQMIWMKNMLN 259
           I AGS CTQ+IWM+N+L+
Sbjct: 296 IVAGSGCTQLIWMENILD 313

[Close]

BLAST of Cmc11g0302721 vs. NCBI nr
Match: KAA0054435.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK14601.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 401.4 bits (1030), Expect = 6.0e-108
Identity = 202/223 (90.58%), Postives = 207/223 (92.83%), Query Frame = 0


Query: 1    MYLGERGYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMKSEFEMS 60
            MYLGER YSRGETDKTL INRTST+LIVAQIYVDDIIFGGFPKTLV+NFINIMKSEFEMS
Sbjct: 813  MYLGERVYSRGETDKTLFINRTSTNLIVAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMS 872

Query: 61   LVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGT 120
            LVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQ+KRTPA THAKITKD VGT
Sbjct: 873  LVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQHKRTPAVTHAKITKDMVGT 932

Query: 121  TVDHKLYRSMIGSHLYLKASRPDIAYAVGICARYQSDPCTSHLNAFKRIIKYVHGTTDFG 180
             VDHKLYRSMIGS LYL  SRPDIAY VGICARYQSD  TSHLNA KRIIKYVHGTTDFG
Sbjct: 933  EVDHKLYRSMIGSLLYLTTSRPDIAYVVGICARYQSDSRTSHLNAIKRIIKYVHGTTDFG 992

Query: 181  ILYSYDTFSELVGYCDADWAGSADDRKSSSGGCFFLGNNLVSW 224
            ILYSYDT SELVGY +AD AGSADDRK +SGGCFFLGNNLVSW
Sbjct: 993  ILYSYDTSSELVGYYNADRAGSADDRKGTSGGCFFLGNNLVSW 1035

[Close]

BLAST of Cmc11g0302721 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.0e-37
Identity = 94/266 (35.34%), Postives = 148/266 (55.64%), Query Frame = 0


Query: 2    YLGERGYSRGETDKTLLINRTS-TDLIVAQIYVDDIIFGGFPKTLVNNFINIMKSEFEMS 61
            ++  + Y +  +D  +   R S  + I+  +YVDD++  G  K L+      +   F+M 
Sbjct: 977  FMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMK 1036

Query: 62   LVGELSCFLGLQI--KQRSEGMFISQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTV 121
             +G     LG++I  ++ S  +++SQEKY + ++++F +  ++   TP A H K++K   
Sbjct: 1037 DLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMC 1096

Query: 122  GTTVDHK------LYRSMIGSHLY-LKASRPDIAYAVGICARYQSDPCTSHLNAFKRIIK 181
             TTV+ K       Y S +GS +Y +  +RPDIA+AVG+ +R+  +P   H  A K I++
Sbjct: 1097 PTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILR 1156

Query: 182  YVHGTTDFGILYSYDTFSELVGYCDADWAGSADDRKSSSGGCFFLGNNLVSWFSKKQNCV 241
            Y+ GTT   + +   +   L GY DAD AG  D+RKSS+G  F      +SW SK Q CV
Sbjct: 1157 YLRGTTGDCLCFG-GSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCV 1216

Query: 242  SLSTTEVEYITAGSRCTQMIWMKNML 258
            +LSTTE EYI A     +MIW+K  L
Sbjct: 1217 ALSTTEAEYIAATETGKEMIWLKRFL 1241

[Close]

BLAST of Cmc11g0302721 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.4e-37
Identity = 84/256 (32.81%), Postives = 140/256 (54.69%), Query Frame = 0


Query: 2    YLGERGYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMKSEFEMSL 61
            YL   G+    +D +L + +    +I   +YVDDI+  G    L+ + ++ +   F +  
Sbjct: 1103 YLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKE 1162

Query: 62   VGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGTT 121
              +L  FLG++ K+  +G+ +SQ +Y  +L+ +  +  ++   TP AT  K+T  +    
Sbjct: 1163 HEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKL 1222

Query: 122  VDHKLYRSMIGSHLYLKASRPDIAYAVGICARYQSDPCTSHLNAFKRIIKYVHGTTDFGI 181
             D   YR ++GS  YL  +RPD++YAV   ++Y   P   H NA KR+++Y+ GT D GI
Sbjct: 1223 PDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGI 1282

Query: 182  LYSYDTFSELVGYCDADWAGSADDRKSSSGGCFFLGNNLVSWFSKKQNCVSLSTTEVEYI 241
                     L  Y DADWAG  DD  S++G   +LG++ +SW SKKQ  V  S+TE EY 
Sbjct: 1283 FLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYR 1342

Query: 242  TAGSRCTQMIWMKNML 258
            +  +  +++ W+ ++L
Sbjct: 1343 SVANTSSELQWICSLL 1358

[Close]

BLAST of Cmc11g0302721 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.7e-36
Identity = 85/256 (33.20%), Postives = 140/256 (54.69%), Query Frame = 0


Query: 2    YLGERGYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMKSEFEMSL 61
            YL   G+    +D +L + +    ++   +YVDDI+  G   TL++N ++ +   F +  
Sbjct: 1120 YLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKD 1179

Query: 62   VGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGTT 121
              EL  FLG++ K+   G+ +SQ +Y  +L+ +  +  ++   TP A   K++  +    
Sbjct: 1180 HEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKL 1239

Query: 122  VDHKLYRSMIGSHLYLKASRPDIAYAVGICARYQSDPCTSHLNAFKRIIKYVHGTTDFGI 181
             D   YR ++GS  YL  +RPDI+YAV   +++   P   HL A KRI++Y+ GT + GI
Sbjct: 1240 TDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGI 1299

Query: 182  LYSYDTFSELVGYCDADWAGSADDRKSSSGGCFFLGNNLVSWFSKKQNCVSLSTTEVEYI 241
                     L  Y DADWAG  DD  S++G   +LG++ +SW SKKQ  V  S+TE EY 
Sbjct: 1300 FLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYR 1359

Query: 242  TAGSRCTQMIWMKNML 258
            +  +  ++M W+ ++L
Sbjct: 1360 SVANTSSEMQWICSLL 1375

[Close]

BLAST of Cmc11g0302721 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.2e-35
Identity = 79/222 (35.59%), Postives = 123/222 (55.41%), Query Frame = 0


Query: 31  IYVDDIIFGGFPKTLVNNFINIMKSEFEMSLVGELSCFLGLQIKQRSEGMFISQEKYAKN 90
           +YVDDI+  G   TL+N  I  + S F M  +G +  FLG+QIK    G+F+SQ KYA+ 
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 91  LVKKFGLDQSQYKRTPAATHAKITKDTVGTTVDHKLYRSMIGSHLYLKASRPDIAYAVGI 150
           ++   G+   +   TP       +  T     D   +RS++G+  YL  +RPDI+YAV I
Sbjct: 65  ILNNAGMLDCKPMSTPLPLKLNSSVST-AKYPDPSDFRSIVGALQYLTLTRPDISYAVNI 124

Query: 151 CARYQSDPCTSHLNAFKRIIKYVHGTTDFGILYSYDTFSELVGYCDADWAGSADDRKSSS 210
             +   +P  +  +  KR+++YV GT   G+    ++   +  +CD+DWAG    R+S++
Sbjct: 125 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTT 184

Query: 211 GGCFFLGNNLVSWFSKKQNCVSLSTTEVEYITAGSRCTQMIW 253
           G C FLG N++SW +K+Q  VS S+TE EY        ++ W
Sbjct: 185 GFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc11g0302721 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 136.7 bits (343), Expect = 3.6e-31
Identity = 76/236 (32.20%), Postives = 135/236 (57.20%), Query Frame = 0


Query: 27   IVAQIYVDDIIFGGFPKTLVNNFINIMKSEFEMSLVGELSCFLGLQIKQRSEGMFISQEK 86
            I   +YVDD++      T +NNF   +  +F M+ + E+  F+G++I+ + + +++SQ  
Sbjct: 1082 IYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSA 1141

Query: 87   YAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGTTVD-HKLYRSMIGSHLYLK-ASRPDI 146
            Y K ++ KF ++      TP    +KI  + + +  D +   RS+IG  +Y+   +RPD+
Sbjct: 1142 YVKKILSKFNMENCNAVSTPLP--SKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDL 1201

Query: 147  AYAVGICARYQSDPCTSHLNAFKRIIKYVHGTTDFGILYSYDTFSE--LVGYCDADWAGS 206
              AV I +RY S   +      KR+++Y+ GT D  +++  +   E  ++GY D+DWAGS
Sbjct: 1202 TTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGS 1261

Query: 207  ADDRKSSSGGCFFLGN-NLVSWFSKKQNCVSLSTTEVEYITAGSRCTQMIWMKNML 258
              DRKS++G  F + + NL+ W +K+QN V+ S+TE EY+       + +W+K +L
Sbjct: 1262 EIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLL 1315

[Close]

BLAST of Cmc11g0302721 vs. ExPASy TrEMBL
Match: A0A5A7UF87 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004260 PE=4 SV=1)

HSP 1 Score: 510.4 bits (1313), Expect = 4.5e-141
Identity = 250/258 (96.90%), Postives = 254/258 (98.45%), Query Frame = 0


Query: 1   MYLGERGYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMKSEFEMS 60
           MYLGERGYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIM SEFEMS
Sbjct: 562 MYLGERGYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMTSEFEMS 621

Query: 61  LVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGT 120
           LVGELSCFLGLQIKQRSEGMF+SQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGT
Sbjct: 622 LVGELSCFLGLQIKQRSEGMFMSQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGT 681

Query: 121 TVDHKLYRSMIGSHLYLKASRPDIAYAVGICARYQSDPCTSHLNAFKRIIKYVHGTTDFG 180
            VDHKLYRSMIGSHLYLKASRPDIAYAV ICARYQSDPCTSHLNA KRIIKYVHGTTDFG
Sbjct: 682 AVDHKLYRSMIGSHLYLKASRPDIAYAVEICARYQSDPCTSHLNAVKRIIKYVHGTTDFG 741

Query: 181 ILYSYDTFSELVGYCDADWAGSADDRKSSSGGCFFLGNNLVSWFSKKQNCVSLSTTEVEY 240
           ILYSYDTFS+LVGYCDADWAGSADDRKS+SGGCFFLGNNLVSWFSKKQNCVSLSTTEVEY
Sbjct: 742 ILYSYDTFSKLVGYCDADWAGSADDRKSTSGGCFFLGNNLVSWFSKKQNCVSLSTTEVEY 801

Query: 241 ITAGSRCTQMIWMKNMLN 259
           ITAGSRCTQMIWMKNML+
Sbjct: 802 ITAGSRCTQMIWMKNMLH 819

[Close]

BLAST of Cmc11g0302721 vs. ExPASy TrEMBL
Match: A0A5D3BY43 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00230 PE=4 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 6.9e-126
Identity = 227/256 (88.67%), Postives = 235/256 (91.80%), Query Frame = 0


Query: 1   MYLGERGYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMKSEFEMS 60
           MYLGERGYSRGETDKTL IN+TSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMKSEFEMS
Sbjct: 223 MYLGERGYSRGETDKTLFINKTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMKSEFEMS 282

Query: 61  LVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGT 120
           LVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGL QSQYK+TPAATH KITKDT+GT
Sbjct: 283 LVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLYQSQYKKTPAATHTKITKDTIGT 342

Query: 121 TVDHKLYRSMIGSHLYLKASRPDIAYAVGICARYQSDPCTSHLNAFKRIIKYVHGTTDFG 180
            VDHKLYRSMIGS LYL AS PDI YAVGIC RYQSDP TSHLNA KRIIKYVHGTTDF 
Sbjct: 343 AVDHKLYRSMIGSLLYLIASIPDIDYAVGICVRYQSDPRTSHLNAVKRIIKYVHGTTDFR 402

Query: 181 ILYSYDTFSELVGYCDADWAGSADDRKSSSGGCFFLGNNLVSWFSKKQNCVSLSTTEVEY 240
           ILYSYDT S+LVGYCDA W GSADDRK++ GGCFFLGNNLVSWFSKKQNCV LS+ E EY
Sbjct: 403 ILYSYDTSSKLVGYCDAGWEGSADDRKNTFGGCFFLGNNLVSWFSKKQNCVPLSSAEAEY 462

Query: 241 ITAGSRCTQMIWMKNM 257
           I AG+ CTQMIWMKNM
Sbjct: 463 IVAGNGCTQMIWMKNM 478

[Close]

BLAST of Cmc11g0302721 vs. ExPASy TrEMBL
Match: A0A1S4E1S5 (uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=LOC107991476 PE=4 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 1.1e-112
Identity = 205/212 (96.70%), Postives = 208/212 (98.11%), Query Frame = 0


Query: 1   MYLGERGYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMKSEFEMS 60
           MYLGERGYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIM SEFEMS
Sbjct: 1   MYLGERGYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMTSEFEMS 60

Query: 61  LVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGT 120
           LVGELSCFLGLQIKQRSEGMF+SQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGT
Sbjct: 61  LVGELSCFLGLQIKQRSEGMFMSQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGT 120

Query: 121 TVDHKLYRSMIGSHLYLKASRPDIAYAVGICARYQSDPCTSHLNAFKRIIKYVHGTTDFG 180
            VDHKLYRSMIGSHLYLKASRPDIAYAV ICARYQSDPCTSHLNA KRIIKYVHGTTDFG
Sbjct: 121 AVDHKLYRSMIGSHLYLKASRPDIAYAVEICARYQSDPCTSHLNAVKRIIKYVHGTTDFG 180

Query: 181 ILYSYDTFSELVGYCDADWAGSADDRKSSSGG 213
           ILYSYDTFS+LVGYCDADWAGSADDRKS+SGG
Sbjct: 181 ILYSYDTFSKLVGYCDADWAGSADDRKSTSGG 212

[Close]

BLAST of Cmc11g0302721 vs. ExPASy TrEMBL
Match: A0A5D3DI97 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002180 PE=4 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 4.5e-109
Identity = 192/258 (74.42%), Postives = 222/258 (86.05%), Query Frame = 0


Query: 1   MYLGERGYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMKSEFEMS 60
           +YL  +GYSRGE DKTL I+R S  L+VAQIYVDDIIFGGFP  LVNNFINIM+SEFEMS
Sbjct: 56  VYLRGKGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFGGFPHDLVNNFINIMQSEFEMS 115

Query: 61  LVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGT 120
           +VGELSCFLG QIKQ+++ + ISQ+KYAKN+ KKFGL+Q++ KRTPAATH K+T+D  G 
Sbjct: 116 MVGELSCFLGFQIKQKNDDIIISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGA 175

Query: 121 TVDHKLYRSMIGSHLYLKASRPDIAYAVGICARYQSDPCTSHLNAFKRIIKYVHGTTDFG 180
            VDHKLYRS++ + LYL ASRPDIAYAVGICARYQ+DP  SHL A KRI+KYVHGT DFG
Sbjct: 176 EVDHKLYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFG 235

Query: 181 ILYSYDTFSELVGYCDADWAGSADDRKSSSGGCFFLGNNLVSWFSKKQNCVSLSTTEVEY 240
           ++YSYDT   LVGYCDADWAG ADDRKS+SGGCFFLGNNL+ W SKKQNCVSLSTTE EY
Sbjct: 236 MMYSYDTTPTLVGYCDADWAGLADDRKSTSGGCFFLGNNLIYWLSKKQNCVSLSTTEAEY 295

Query: 241 ITAGSRCTQMIWMKNMLN 259
           I AGS CTQ+IWM+N+L+
Sbjct: 296 IVAGSGCTQLIWMENILD 313

[Close]

BLAST of Cmc11g0302721 vs. ExPASy TrEMBL
Match: A0A5D3CS19 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G001080 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 2.9e-108
Identity = 202/223 (90.58%), Postives = 207/223 (92.83%), Query Frame = 0


Query: 1    MYLGERGYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMKSEFEMS 60
            MYLGER YSRGETDKTL INRTST+LIVAQIYVDDIIFGGFPKTLV+NFINIMKSEFEMS
Sbjct: 813  MYLGERVYSRGETDKTLFINRTSTNLIVAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMS 872

Query: 61   LVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGT 120
            LVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQ+KRTPA THAKITKD VGT
Sbjct: 873  LVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQHKRTPAVTHAKITKDMVGT 932

Query: 121  TVDHKLYRSMIGSHLYLKASRPDIAYAVGICARYQSDPCTSHLNAFKRIIKYVHGTTDFG 180
             VDHKLYRSMIGS LYL  SRPDIAY VGICARYQSD  TSHLNA KRIIKYVHGTTDFG
Sbjct: 933  EVDHKLYRSMIGSLLYLTTSRPDIAYVVGICARYQSDSRTSHLNAIKRIIKYVHGTTDFG 992

Query: 181  ILYSYDTFSELVGYCDADWAGSADDRKSSSGGCFFLGNNLVSW 224
            ILYSYDT SELVGY +AD AGSADDRK +SGGCFFLGNNLVSW
Sbjct: 993  ILYSYDTSSELVGYYNADRAGSADDRKGTSGGCFFLGNNLVSW 1035

[Close]

BLAST of Cmc11g0302721 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 150.2 bits (378), Expect = 2.3e-36
Identity = 79/222 (35.59%), Postives = 123/222 (55.41%), Query Frame = 0


Query: 31  IYVDDIIFGGFPKTLVNNFINIMKSEFEMSLVGELSCFLGLQIKQRSEGMFISQEKYAKN 90
           +YVDDI+  G   TL+N  I  + S F M  +G +  FLG+QIK    G+F+SQ KYA+ 
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 91  LVKKFGLDQSQYKRTPAATHAKITKDTVGTTVDHKLYRSMIGSHLYLKASRPDIAYAVGI 150
           ++   G+   +   TP       +  T     D   +RS++G+  YL  +RPDI+YAV I
Sbjct: 65  ILNNAGMLDCKPMSTPLPLKLNSSVST-AKYPDPSDFRSIVGALQYLTLTRPDISYAVNI 124

Query: 151 CARYQSDPCTSHLNAFKRIIKYVHGTTDFGILYSYDTFSELVGYCDADWAGSADDRKSSS 210
             +   +P  +  +  KR+++YV GT   G+    ++   +  +CD+DWAG    R+S++
Sbjct: 125 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTT 184

Query: 211 GGCFFLGNNLVSWFSKKQNCVSLSTTEVEYITAGSRCTQMIW 253
           G C FLG N++SW +K+Q  VS S+TE EY        ++ W
Sbjct: 185 GFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc11g0302721 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 147.1 bits (370), Expect = 1.9e-35
Identity = 83/247 (33.60%), Postives = 132/247 (53.44%), Query Frame = 0


Query: 7   GYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMKSEFEMSLVGELS 66
           G+ +  +D T  +  T+T  +   +YVDDII        V+   + +KS F++  +G L 
Sbjct: 258 GFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLK 317

Query: 67  CFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGTTVDHKL 126
            FLGL+I + + G+ I Q KYA +L+ + GL   +    P       +  + G  VD K 
Sbjct: 318 YFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKA 377

Query: 127 YRSMIGSHLYLKASRPDIAYAVGICARYQSDPCTSHLNAFKRIIKYVHGTTDFGILYSYD 186
           YR +IG  +YL+ +R DI++AV   +++   P  +H  A  +I+ Y+ GT   G+ YS  
Sbjct: 378 YRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQ 437

Query: 187 TFSELVGYCDADWAGSADDRKSSSGGCFFLGNNLVSWFSKKQNCVSLSTTEVEYITAGSR 246
              +L  + DA +    D R+S++G C FLG +L+SW SKKQ  VS S+ E EY      
Sbjct: 438 AEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFA 497

Query: 247 CTQMIWM 254
             +M+W+
Sbjct: 498 TDEMMWL 504

[Close]

BLAST of Cmc11g0302721 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-09
Identity = 30/88 (34.09%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 135 LYLKASRPDIAYAVGICARYQSDPCTSHLNAFKRIIKYVHGTTDFGILYSYDTFSELVGY 194
           +YL  +RPD+ +AV   +++ S   T+ + A  +++ YV GT   G+ YS  +  +L  +
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 195 CDADWAGSADDRKSSSGGC-----FFLG 218
            D+DWA   D R+S +G C     +FLG
Sbjct: 61  ADSDWASCPDTRRSVTGFCSLVPLWFLG 88

The following BLAST results are available for this feature:

BLAST of Cmc11g0302721 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054623.1	9.2e-141	96.90	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0031683.1	1.4e-125	88.67	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK04427.1 gag-pol polyprotein [...	[more]
XP_016901935.1	2.4e-112	96.70	PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]	[more]
TYK23188.1	9.3e-109	74.42	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0054435.1	6.0e-108	90.58	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK14601.1 gag-pol polyprotein [...	[more]

BLAST of Cmc11g0302721 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.0e-37	35.34	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	3.4e-37	32.81	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.7e-36	33.20	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92519	3.2e-35	35.59	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
P04146	3.6e-31	32.20	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cmc11g0302721 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UF87	4.5e-141	96.90	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3BY43	6.9e-126	88.67	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G...	[more]
A0A1S4E1S5	1.1e-112	96.70	uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A5D3DI97	4.5e-109	74.42	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G...	[more]
A0A5D3CS19	2.9e-108	90.58	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G...	[more]

BLAST of Cmc11g0302721 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	2.3e-36	35.59	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	1.9e-35	33.60	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00240.1	1.4e-09	34.09	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 3..106 e-value: 3.4E-16 score: 59.6
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 110..214
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 110..214
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 192..257 e-value: 2.21952E-33 score: 116.414
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 20..233

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0302721.1	Cmc11g0302721.1	mRNA