Cmc11g0302301 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0302301
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr11: 23150606 .. 23151076 (-)
RNA-Seq Expression	Cmc11g0302301
Synteny	Cmc11g0302301

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCAGCCCGAGGGGTTCATAACCCAAGGTCAGGAGCAAAAAGTTTGCAAGCTGAATCGATCCATTTATGGATTGAAACAAGCATCTAGATTTTGGAACATTAGGTTTGATAATGCAATCAAATCTTACAGTTTTGACCAAAACGTTGATGAACCTTGTGTATACAAGAAAATCAACAAAGGTAAAGCAACTTTCTTAGTACTTTATGTGGACGATATCCTCCTAATTGGGAATGATGTGGGATACCTAACTATCGTTAAAACTTGGCTAGCAGCCCAATTCCAAATGAAAGATTTGGGAGAGGCACAATATGTTCTTGACATCCAAATCATAAGGGATCGTAAGAACAAAATGCTAGCACGGTCTCAAGCAACCTATATCGACAAAATGTTGGTTCGATATTTGATGCATAACTCTAAGAAGAGTTTATTACCTTTCAGGCATGGGGTTCACTTGTCTAAGAAATAG

mRNA sequence

ATGTCTCAGCCCGAGGGGTTCATAACCCAAGGTCAGGAGCAAAAAGTTTGCAAGCTGAATCGATCCATTTATGGATTGAAACAAGCATCTAGATTTTGGAACATTAGGTTTGATAATGCAATCAAATCTTACAGTTTTGACCAAAACGTTGATGAACCTTGTGTATACAAGAAAATCAACAAAGGTAAAGCAACTTTCTTAGTACTTTATGTGGACGATATCCTCCTAATTGGGAATGATGTGGGATACCTAACTATCGTTAAAACTTGGCTAGCAGCCCAATTCCAAATGAAAGATTTGGGAGAGGCACAATATGTTCTTGACATCCAAATCATAAGGGATCGTAAGAACAAAATGCTAGCACGGTCTCAAGCAACCTATATCGACAAAATGTTGGTTCGATATTTGATGCATAACTCTAAGAAGAGTTTATTACCTTTCAGGCATGGGGTTCACTTGTCTAAGAAATAG

Coding sequence (CDS)

ATGTCTCAGCCCGAGGGGTTCATAACCCAAGGTCAGGAGCAAAAAGTTTGCAAGCTGAATCGATCCATTTATGGATTGAAACAAGCATCTAGATTTTGGAACATTAGGTTTGATAATGCAATCAAATCTTACAGTTTTGACCAAAACGTTGATGAACCTTGTGTATACAAGAAAATCAACAAAGGTAAAGCAACTTTCTTAGTACTTTATGTGGACGATATCCTCCTAATTGGGAATGATGTGGGATACCTAACTATCGTTAAAACTTGGCTAGCAGCCCAATTCCAAATGAAAGATTTGGGAGAGGCACAATATGTTCTTGACATCCAAATCATAAGGGATCGTAAGAACAAAATGCTAGCACGGTCTCAAGCAACCTATATCGACAAAATGTTGGTTCGATATTTGATGCATAACTCTAAGAAGAGTTTATTACCTTTCAGGCATGGGGTTCACTTGTCTAAGAAATAG

Protein sequence

MSQPEGFITQGQEQKVCKLNRSIYGLKQASRFWNIRFDNAIKSYSFDQNVDEPCVYKKINKGKATFLVLYVDDILLIGNDVGYLTIVKTWLAAQFQMKDLGEAQYVLDIQIIRDRKNKMLARSQATYIDKMLVRYLMHNSKKSLLPFRHGVHLSKK

Homology

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BLAST of Cmc11g0302301 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 283.5 bits (724), Expect = 1.1e-72
Identity = 141/156 (90.38%), Postives = 143/156 (91.67%), Query Frame = 0


Query: 1   MSQPEGFITQGQEQKVCKLNRSIYGLKQASRFWNIRFDNAIKSYSFDQNVDEPCVYKKIN 60
           MSQPEGFITQGQEQKVCKLNRSIYGLKQASR WNIRFD AIKSY FDQNVDEPCVYKKIN
Sbjct: 840 MSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKIN 899

Query: 61  KGKATFLVLYVDDILLIGNDVGYLTIVKTWLAAQFQMKDLGEAQYVLDIQIIRDRKNKML 120
           KGK  FLVLYVDDILLIGNDVGYLT VK WLAAQFQMKDLGEAQYVL IQIIRDRKNK L
Sbjct: 900 KGKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTL 959

Query: 121 ARSQATYIDKMLVRYLMHNSKKSLLPFRHGVHLSKK 157
           A SQATYIDK+LVRY M NSKK LLPFRHGVHLSK+
Sbjct: 960 ALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 995

[Close]

BLAST of Cmc11g0302301 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 283.5 bits (724), Expect = 1.1e-72
Identity = 141/156 (90.38%), Postives = 143/156 (91.67%), Query Frame = 0


Query: 1   MSQPEGFITQGQEQKVCKLNRSIYGLKQASRFWNIRFDNAIKSYSFDQNVDEPCVYKKIN 60
           MSQPEGFITQGQEQKVCKLNRSIYGLKQASR WNIRFD AIKSY FDQNVDEPCVYKKIN
Sbjct: 714 MSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKIN 773

Query: 61  KGKATFLVLYVDDILLIGNDVGYLTIVKTWLAAQFQMKDLGEAQYVLDIQIIRDRKNKML 120
           KGK  FLVLYVDDILLIGNDVGYLT VK WLAAQFQMKDLGEAQYVL IQIIRDRKNK L
Sbjct: 774 KGKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTL 833

Query: 121 ARSQATYIDKMLVRYLMHNSKKSLLPFRHGVHLSKK 157
           A SQATYIDK+LVRY M NSKK LLPFRHGVHLSK+
Sbjct: 834 ALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 869

[Close]

BLAST of Cmc11g0302301 vs. NCBI nr
Match: KAA0033121.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK17112.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 283.1 bits (723), Expect = 1.4e-72
Identity = 141/156 (90.38%), Postives = 143/156 (91.67%), Query Frame = 0


Query: 1   MSQPEGFITQGQEQKVCKLNRSIYGLKQASRFWNIRFDNAIKSYSFDQNVDEPCVYKKIN 60
           MSQPEGFITQGQEQKVCKLNRSIYGLKQASR WNIRFD AIKSY F+QNVDEPCVYKKIN
Sbjct: 450 MSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIN 509

Query: 61  KGKATFLVLYVDDILLIGNDVGYLTIVKTWLAAQFQMKDLGEAQYVLDIQIIRDRKNKML 120
           KGK  FLVLYVDDILLIGNDVGYLT VK WLAAQFQMKDLGEAQYVL IQIIRDRKNK L
Sbjct: 510 KGKVVFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTL 569

Query: 121 ARSQATYIDKMLVRYLMHNSKKSLLPFRHGVHLSKK 157
           A SQATYIDKMLVRY M NSKK LLPFRHGVHLSK+
Sbjct: 570 ALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKE 605

[Close]

BLAST of Cmc11g0302301 vs. NCBI nr
Match: TYK15984.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 282.3 bits (721), Expect = 2.5e-72
Identity = 140/156 (89.74%), Postives = 143/156 (91.67%), Query Frame = 0


Query: 1   MSQPEGFITQGQEQKVCKLNRSIYGLKQASRFWNIRFDNAIKSYSFDQNVDEPCVYKKIN 60
           MSQPEGFITQGQEQKVCKLNRSIYGLKQASR WNIRFD AIKSY FDQNVDEPCVYKKIN
Sbjct: 450 MSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKIN 509

Query: 61  KGKATFLVLYVDDILLIGNDVGYLTIVKTWLAAQFQMKDLGEAQYVLDIQIIRDRKNKML 120
           KGK  FLVLYVDDILLIGNDVGYLT VK WLAAQFQMKDLGEAQYVL IQIIRDRKNK L
Sbjct: 510 KGKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTL 569

Query: 121 ARSQATYIDKMLVRYLMHNSKKSLLPFRHGVHLSKK 157
           A SQATYIDKMLVRYLM NSKK LLPF+HG HLS++
Sbjct: 570 ALSQATYIDKMLVRYLMQNSKKDLLPFKHGFHLSEE 605

[Close]

BLAST of Cmc11g0302301 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 282.0 bits (720), Expect = 3.2e-72
Identity = 140/156 (89.74%), Postives = 142/156 (91.03%), Query Frame = 0


Query: 1   MSQPEGFITQGQEQKVCKLNRSIYGLKQASRFWNIRFDNAIKSYSFDQNVDEPCVYKKIN 60
           MSQPEGFITQGQEQKVCKLNRSIYGLKQASR WNIRFD AIKSY FDQNVDEPCVYKKIN
Sbjct: 840 MSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKIN 899

Query: 61  KGKATFLVLYVDDILLIGNDVGYLTIVKTWLAAQFQMKDLGEAQYVLDIQIIRDRKNKML 120
           KGK  FLVLYVDDILLIGNDVGYLT VK WLAAQFQMKDLGE QYVL IQIIRDRKNK L
Sbjct: 900 KGKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEGQYVLGIQIIRDRKNKTL 959

Query: 121 ARSQATYIDKMLVRYLMHNSKKSLLPFRHGVHLSKK 157
           A SQATYIDK+LVRY M NSKK LLPFRHGVHLSK+
Sbjct: 960 ALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 995

[Close]

BLAST of Cmc11g0302301 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.3e-31
Identity = 69/157 (43.95%), Postives = 104/157 (66.24%), Query Frame = 0


Query: 1    MSQPEGFITQGQEQKVCKLNRSIYGLKQASRFWNIRFDNAIKSYSFDQNVDEPCVY-KKI 60
            M QPEGF   G++  VCKLN+S+YGLKQA R W ++FD+ +KS ++ +   +PCVY K+ 
Sbjct: 938  MEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRF 997

Query: 61   NKGKATFLVLYVDDILLIGNDVGYLTIVKTWLAAQFQMKDLGEAQYVLDIQIIRDRKNKM 120
            ++     L+LYVDD+L++G D G +  +K  L+  F MKDLG AQ +L ++I+R+R ++ 
Sbjct: 998  SENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRK 1057

Query: 121  LARSQATYIDKMLVRYLMHNSKKSLLPFRHGVHLSKK 157
            L  SQ  YI+++L R+ M N+K    P    + LSKK
Sbjct: 1058 LWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKK 1094

[Close]

BLAST of Cmc11g0302301 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-15
Identity = 47/141 (33.33%), Postives = 80/141 (56.74%), Query Frame = 0


Query: 1    MSQPEGFITQGQEQKVCKLNRSIYGLKQASRFWNIRFDNAIKSYSFDQNVDEPCVY--KK 60
            M  P+G         VCKLN++IYGLKQA+R W   F+ A+K   F  +  + C+Y   K
Sbjct: 1018 MRLPQGI--SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDK 1077

Query: 61   INKGKATFLVLYVDDILLIGNDVGYLTIVKTWLAAQFQMKDLGEAQYVLDIQIIRDRKNK 120
             N  +  +++LYVDD+++   D+  +   K +L  +F+M DL E ++ + I+I  + +  
Sbjct: 1078 GNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRI--EMQED 1137

Query: 121  MLARSQATYIDKMLVRYLMHN 140
             +  SQ+ Y+ K+L ++ M N
Sbjct: 1138 KIYLSQSAYVKKILSKFNMEN 1154

[Close]

BLAST of Cmc11g0302301 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-15
Identity = 55/155 (35.48%), Postives = 81/155 (52.26%), Query Frame = 0


Query: 1    MSQPEGFITQGQEQKVCKLNRSIYGLKQASRFWNIRFDNAIKSYSFDQNVDEPCVYKKIN 60
            MSQP GFI + +   VCKL +++YGLKQA R W +   N + +  F  +V +  ++  + 
Sbjct: 1081 MSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLF-VLQ 1140

Query: 61   KGKA-TFLVLYVDDILLIGNDVGYLTIVKTWLAAQFQMKDLGEAQYVLDIQIIRDRKNKM 120
            +GK+  ++++YVDDIL+ GND   L      L+ +F +KD  E  Y L I+    R    
Sbjct: 1141 RGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIE--AKRVPTG 1200

Query: 121  LARSQATYIDKMLVRYLMHNSKKSLLPFRHGVHLS 155
            L  SQ  YI  +L R  M  +K    P      LS
Sbjct: 1201 LHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLS 1232

[Close]

BLAST of Cmc11g0302301 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-12
Identity = 45/146 (30.82%), Postives = 73/146 (50.00%), Query Frame = 0


Query: 1    MSQPEGFITQGQEQKVCKLNRSIYGLKQASRFWNIRFDNAIKSYSFDQNVDEPCVYKKIN 60
            MSQP GF+ + +   VC+L ++IYGLKQA R W +     + +  F  ++ +  ++    
Sbjct: 1064 MSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQR 1123

Query: 61   KGKATFLVLYVDDILLIGNDVGYLTIVKTWLAAQFQMKDLGEAQYVLDIQIIRDRKNKML 120
                 ++++YVDDIL+ GND   L      L+ +F +K+  +  Y L I+    R  + L
Sbjct: 1124 GRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIE--AKRVPQGL 1183

Query: 121  ARSQATYIDKMLVRYLMHNSKKSLLP 147
              SQ  Y   +L R  M  +K    P
Sbjct: 1184 HLSQRRYTLDLLARTNMLTAKPVATP 1207

[Close]

BLAST of Cmc11g0302301 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-09
Identity = 39/130 (30.00%), Postives = 59/130 (45.38%), Query Frame = 0


Query: 1   MSQPEGFITQGQEQKVCKLNRSIYGLKQASRFWNIRFDNAIKSYSFDQNVDEPCVYKKIN 60
           + QP GF+ +     V +L   +YGLKQA   WN   +N +K   F ++  E  +Y +  
Sbjct: 18  VKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKKIGFCRHEGEHGLYFRST 77

Query: 61  KGKATFLVLYVDDILLIGNDVGYLTIVKTWLAAQFQMKDLGEAQYVLDIQIIRDRKNKML 120
                ++ +YVDD+L+          VK  L   + MKDLG+    L +  I    N  +
Sbjct: 78  SDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKVDKFLGLN-IHQSSNGDI 137

Query: 121 ARSQATYIDK 131
             S   YI K
Sbjct: 138 TLSLQDYIAK 146

[Close]

BLAST of Cmc11g0302301 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.4e-73
Identity = 141/156 (90.38%), Postives = 143/156 (91.67%), Query Frame = 0


Query: 1   MSQPEGFITQGQEQKVCKLNRSIYGLKQASRFWNIRFDNAIKSYSFDQNVDEPCVYKKIN 60
           MSQPEGFITQGQEQKVCKLNRSIYGLKQASR WNIRFD AIKSY FDQNVDEPCVYKKIN
Sbjct: 840 MSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKIN 899

Query: 61  KGKATFLVLYVDDILLIGNDVGYLTIVKTWLAAQFQMKDLGEAQYVLDIQIIRDRKNKML 120
           KGK  FLVLYVDDILLIGNDVGYLT VK WLAAQFQMKDLGEAQYVL IQIIRDRKNK L
Sbjct: 900 KGKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTL 959

Query: 121 ARSQATYIDKMLVRYLMHNSKKSLLPFRHGVHLSKK 157
           A SQATYIDK+LVRY M NSKK LLPFRHGVHLSK+
Sbjct: 960 ALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 995

[Close]

BLAST of Cmc11g0302301 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.4e-73
Identity = 141/156 (90.38%), Postives = 143/156 (91.67%), Query Frame = 0


Query: 1   MSQPEGFITQGQEQKVCKLNRSIYGLKQASRFWNIRFDNAIKSYSFDQNVDEPCVYKKIN 60
           MSQPEGFITQGQEQKVCKLNRSIYGLKQASR WNIRFD AIKSY FDQNVDEPCVYKKIN
Sbjct: 714 MSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKIN 773

Query: 61  KGKATFLVLYVDDILLIGNDVGYLTIVKTWLAAQFQMKDLGEAQYVLDIQIIRDRKNKML 120
           KGK  FLVLYVDDILLIGNDVGYLT VK WLAAQFQMKDLGEAQYVL IQIIRDRKNK L
Sbjct: 774 KGKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTL 833

Query: 121 ARSQATYIDKMLVRYLMHNSKKSLLPFRHGVHLSKK 157
           A SQATYIDK+LVRY M NSKK LLPFRHGVHLSK+
Sbjct: 834 ALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 869

[Close]

BLAST of Cmc11g0302301 vs. ExPASy TrEMBL
Match: A0A5D3CZY3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00460 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 7.0e-73
Identity = 141/156 (90.38%), Postives = 143/156 (91.67%), Query Frame = 0


Query: 1   MSQPEGFITQGQEQKVCKLNRSIYGLKQASRFWNIRFDNAIKSYSFDQNVDEPCVYKKIN 60
           MSQPEGFITQGQEQKVCKLNRSIYGLKQASR WNIRFD AIKSY F+QNVDEPCVYKKIN
Sbjct: 450 MSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIN 509

Query: 61  KGKATFLVLYVDDILLIGNDVGYLTIVKTWLAAQFQMKDLGEAQYVLDIQIIRDRKNKML 120
           KGK  FLVLYVDDILLIGNDVGYLT VK WLAAQFQMKDLGEAQYVL IQIIRDRKNK L
Sbjct: 510 KGKVVFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTL 569

Query: 121 ARSQATYIDKMLVRYLMHNSKKSLLPFRHGVHLSKK 157
           A SQATYIDKMLVRY M NSKK LLPFRHGVHLSK+
Sbjct: 570 ALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKE 605

[Close]

BLAST of Cmc11g0302301 vs. ExPASy TrEMBL
Match: A0A5D3CYF4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001110 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.2e-72
Identity = 140/156 (89.74%), Postives = 143/156 (91.67%), Query Frame = 0


Query: 1   MSQPEGFITQGQEQKVCKLNRSIYGLKQASRFWNIRFDNAIKSYSFDQNVDEPCVYKKIN 60
           MSQPEGFITQGQEQKVCKLNRSIYGLKQASR WNIRFD AIKSY FDQNVDEPCVYKKIN
Sbjct: 450 MSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKIN 509

Query: 61  KGKATFLVLYVDDILLIGNDVGYLTIVKTWLAAQFQMKDLGEAQYVLDIQIIRDRKNKML 120
           KGK  FLVLYVDDILLIGNDVGYLT VK WLAAQFQMKDLGEAQYVL IQIIRDRKNK L
Sbjct: 510 KGKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTL 569

Query: 121 ARSQATYIDKMLVRYLMHNSKKSLLPFRHGVHLSKK 157
           A SQATYIDKMLVRYLM NSKK LLPF+HG HLS++
Sbjct: 570 ALSQATYIDKMLVRYLMQNSKKDLLPFKHGFHLSEE 605

[Close]

BLAST of Cmc11g0302301 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.6e-72
Identity = 140/156 (89.74%), Postives = 142/156 (91.03%), Query Frame = 0


Query: 1   MSQPEGFITQGQEQKVCKLNRSIYGLKQASRFWNIRFDNAIKSYSFDQNVDEPCVYKKIN 60
           MSQPEGFITQGQEQKVCKLNRSIYGLKQASR WNIRFD AIKSY FDQNVDEPCVYKKIN
Sbjct: 840 MSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKIN 899

Query: 61  KGKATFLVLYVDDILLIGNDVGYLTIVKTWLAAQFQMKDLGEAQYVLDIQIIRDRKNKML 120
           KGK  FLVLYVDDILLIGNDVGYLT VK WLAAQFQMKDLGE QYVL IQIIRDRKNK L
Sbjct: 900 KGKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEGQYVLGIQIIRDRKNKTL 959

Query: 121 ARSQATYIDKMLVRYLMHNSKKSLLPFRHGVHLSKK 157
           A SQATYIDK+LVRY M NSKK LLPFRHGVHLSK+
Sbjct: 960 ALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 995

[Close]

BLAST of Cmc11g0302301 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-12
Identity = 40/117 (34.19%), Postives = 65/117 (55.56%), Query Frame = 0


Query: 1   MSQPEGFIT-QGQE---QKVCKLNRSIYGLKQASRFWNIRFDNAIKSYSFDQNVDEPCVY 60
           M  P G+   QG       VC L +SIYGLKQASR W ++F   +  + F Q+  +   +
Sbjct: 210 MKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYF 269

Query: 61  KKINKGKATFLVLYVDDILLIGNDVGYLTIVKTWLAAQFQMKDLGEAQYVLDIQIIR 114
            KI       +++YVDDI++  N+   +  +K+ L + F+++DLG  +Y L ++I R
Sbjct: 270 LKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIAR 326

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BLAST of Cmc11g0302301 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 6.2e-05
Identity = 28/67 (41.79%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 66  FLVLYVDDILLIGNDVGYLTIVKTWLAAQFQMKDLGEAQYVLDIQIIRDRKNKMLARSQA 125
           +L+LYVDDILL G+    L ++   L++ F MKDLG   Y L IQI        L  SQ 
Sbjct: 2   YLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFL--SQT 61

Query: 126 TYIDKML 133
            Y +++L
Sbjct: 62  KYAEQIL 66

The following BLAST results are available for this feature:

BLAST of Cmc11g0302301 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025945.1	1.1e-72	90.38	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	1.1e-72	90.38	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0033121.1	1.4e-72	90.38	gag/pol protein [Cucumis melo var. makuwa] >TYK17112.1 gag/pol protein [Cucumis ...	[more]
TYK15984.1	2.5e-72	89.74	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035907.1	3.2e-72	89.74	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0302301 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.3e-31	43.95	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.8e-15	33.33	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	3.8e-15	35.48	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.0e-12	30.82	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25600	1.8e-09	30.00	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc11g0302301 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZD0	5.4e-73	90.38	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7UYE8	5.4e-73	90.38	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]
A0A5D3CZY3	7.0e-73	90.38	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G004...	[more]
A0A5D3CYF4	1.2e-72	89.74	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00111...	[more]
A0A5A7T2V9	1.6e-72	89.74	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]

BLAST of Cmc11g0302301 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.4e-12	34.19	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	6.2e-05	41.79	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..146 e-value: 8.0E-31 score: 107.5
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 2..143
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 8..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0302301.1	Cmc11g0302301.1	mRNA