Cmc11g0302071 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0302071
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr11: 22781962 .. 22782744 (-)
RNA-Seq Expression	Cmc11g0302071
Synteny	Cmc11g0302071

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGATCTATGATGAGTTATGCTCACTTACCTAATTCGTTTTGGGGTTATGAAGTGCAAACTACTGTCTATATTTTGAATTGTGTTCCATCTAAAAGTGTTTCTGAAACACCTTTGAAATTATGGAATGATCATAAAGGTAGTTTACATCATTTTAGAACCTGGGGTTGTCTAGCACACGTGCTTGAGACTAATCCTAAGAAATTGGAACCTCGTTCAAAATTATGTTTATTTGTAGGCTACCCCAAAGGAACTAGAGGTGGTTACTTCTATGATCCTAAAGATAATAAAGTGTTTGTACCAACAAATGCTATATTTTTAAAAGAGGACCACATAAGGGAGCACAAACCGCGTAGTAAGATAGTATTAAATGAACTTTCCAATGAAACTACTGAACCTTCAACAAGAGTTGTTCATATCGATTCATCTACTGGGATACATCAACCTCAATCGTTGAGGGAACCTCGAAGAAGTGGAAGGGTTACAAACGTACCTATTCATTATATGAGTTTAACTAAAACCTTAACTGTCATATTTAATAACAACATTGAGGATCCATTGACTTTTAAGAAGGCAATGGAGGATGTGGATAAAGATGAATGGATCAAAGCTATGAATCTTAAATTGGAGTCTATGTACTTCAATTCAGTCTGGGATCTTGTAGATCAACCTGATGAGATAAAACCTATAGGTTGTAAATGGATCTACAAGAGGAAAAAGGGTGCAGATGGTAATATACAAACTTTTAAAGCTAGACTAGTGGCAAATGGTTATACCTAA

mRNA sequence

ATGGTTCGATCTATGATGAGTTATGCTCACTTACCTAATTCGTTTTGGGGTTATGAAGTGCAAACTACTGTCTATATTTTGAATTGTGTTCCATCTAAAAGTGTTTCTGAAACACCTTTGAAATTATGGAATGATCATAAAGGTAGTTTACATCATTTTAGAACCTGGGGTTGTCTAGCACACGTGCTTGAGACTAATCCTAAGAAATTGGAACCTCGTTCAAAATTATGTTTATTTGTAGGCTACCCCAAAGGAACTAGAGGTGGTTACTTCTATGATCCTAAAGATAATAAAGTGTTTGTACCAACAAATGCTATATTTTTAAAAGAGGACCACATAAGGGAGCACAAACCGCGTAGTAAGATAGTATTAAATGAACTTTCCAATGAAACTACTGAACCTTCAACAAGAGTTGTTCATATCGATTCATCTACTGGGATACATCAACCTCAATCGTTGAGGGAACCTCGAAGAAGTGGAAGGGTTACAAACGTACCTATTCATTATATGAGTTTAACTAAAACCTTAACTGTCATATTTAATAACAACATTGAGGATCCATTGACTTTTAAGAAGGCAATGGAGGATGTGGATAAAGATGAATGGATCAAAGCTATGAATCTTAAATTGGAGTCTATGTACTTCAATTCAGTCTGGGATCTTGTAGATCAACCTGATGAGATAAAACCTATAGGTTGTAAATGGATCTACAAGAGGAAAAAGGGTGCAGATGGTAATATACAAACTTTTAAAGCTAGACTAGTGGCAAATGGTTATACCTAA

Coding sequence (CDS)

ATGGTTCGATCTATGATGAGTTATGCTCACTTACCTAATTCGTTTTGGGGTTATGAAGTGCAAACTACTGTCTATATTTTGAATTGTGTTCCATCTAAAAGTGTTTCTGAAACACCTTTGAAATTATGGAATGATCATAAAGGTAGTTTACATCATTTTAGAACCTGGGGTTGTCTAGCACACGTGCTTGAGACTAATCCTAAGAAATTGGAACCTCGTTCAAAATTATGTTTATTTGTAGGCTACCCCAAAGGAACTAGAGGTGGTTACTTCTATGATCCTAAAGATAATAAAGTGTTTGTACCAACAAATGCTATATTTTTAAAAGAGGACCACATAAGGGAGCACAAACCGCGTAGTAAGATAGTATTAAATGAACTTTCCAATGAAACTACTGAACCTTCAACAAGAGTTGTTCATATCGATTCATCTACTGGGATACATCAACCTCAATCGTTGAGGGAACCTCGAAGAAGTGGAAGGGTTACAAACGTACCTATTCATTATATGAGTTTAACTAAAACCTTAACTGTCATATTTAATAACAACATTGAGGATCCATTGACTTTTAAGAAGGCAATGGAGGATGTGGATAAAGATGAATGGATCAAAGCTATGAATCTTAAATTGGAGTCTATGTACTTCAATTCAGTCTGGGATCTTGTAGATCAACCTGATGAGATAAAACCTATAGGTTGTAAATGGATCTACAAGAGGAAAAAGGGTGCAGATGGTAATATACAAACTTTTAAAGCTAGACTAGTGGCAAATGGTTATACCTAA

Protein sequence

MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLAHVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVPTNAIFLKEDHIREHKPRSKIVLNELSNETTEPSTRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYMSLTKTLTVIFNNNIEDPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT

Homology

[Close]

BLAST of Cmc11g0302071 vs. NCBI nr
Match: KAA0026233.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 482.6 bits (1241), Expect = 2.1e-132
Identity = 231/270 (85.56%), Postives = 241/270 (89.26%), Query Frame = 0


Query: 1   MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLA 60
           MVRSMMSYAHLPNSFWGY VQT VYILNCVPSKSVSETPLKLWN HKGSL HFR WGC A
Sbjct: 483 MVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSETPLKLWNGHKGSLRHFRIWGCPA 542

Query: 61  HVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVPTNAIFLKEDHIREHKPRS 120
           HVLE NPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFV TNA FL+EDHIREHKPRS
Sbjct: 543 HVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVSTNATFLEEDHIREHKPRS 602

Query: 121 KIVLNELSNETTEPST----------RVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYM 180
           KIVLNELS ETTEPST          RVVH+ SST  HQPQSLREPRRSGRVTN+PI YM
Sbjct: 603 KIVLNELSKETTEPSTRVVEEPSALIRVVHVRSSTRTHQPQSLREPRRSGRVTNLPIRYM 662

Query: 181 SLTKTLTVIFNNNIEDPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKP 240
           SLT+TLTVI + +IEDPLTFKKAMEDVDKDEWIKAMNL+LESMYFNSVWDLVDQPD +KP
Sbjct: 663 SLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKP 722

Query: 241 IGCKWIYKRKKGADGNIQTFKARLVANGYT 261
           IGCKWIYKRK+GADG +QTFKARLVA GYT
Sbjct: 723 IGCKWIYKRKRGADGKVQTFKARLVAKGYT 752

[Close]

BLAST of Cmc11g0302071 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 479.9 bits (1234), Expect = 1.3e-131
Identity = 230/270 (85.19%), Postives = 240/270 (88.89%), Query Frame = 0


Query: 1   MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLA 60
           MVRSMMSYAHLPNSFWGY VQT VYILNCVPSKSVSETPLKLWN  KGSL HFR WGC A
Sbjct: 623 MVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSETPLKLWNGRKGSLRHFRIWGCPA 682

Query: 61  HVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVPTNAIFLKEDHIREHKPRS 120
           HVLE NPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFV TNA FL+EDHIREHKPRS
Sbjct: 683 HVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVSTNATFLEEDHIREHKPRS 742

Query: 121 KIVLNELSNETTEPS----------TRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYM 180
           KIVLNELS ETTEPS          TRVVH+ SST  HQPQSLREPRRSGRVTN+PI YM
Sbjct: 743 KIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRTHQPQSLREPRRSGRVTNLPIRYM 802

Query: 181 SLTKTLTVIFNNNIEDPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKP 240
           SLT+TLTVI + +IEDPLTFKKAMEDVDKDEWIKAMNL+LESMYFNSVWDLVDQPD +KP
Sbjct: 803 SLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKP 862

Query: 241 IGCKWIYKRKKGADGNIQTFKARLVANGYT 261
           IGCKWIYKRK+GADG +QTFKARLVA GYT
Sbjct: 863 IGCKWIYKRKRGADGKVQTFKARLVAKGYT 892

[Close]

BLAST of Cmc11g0302071 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 479.9 bits (1234), Expect = 1.3e-131
Identity = 230/270 (85.19%), Postives = 240/270 (88.89%), Query Frame = 0


Query: 1   MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLA 60
           MVRSMMSYAHLPNSFWGY VQT VYILNCVPSKSVSETPLKLWN  KGSL HFR WGC A
Sbjct: 624 MVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSETPLKLWNGRKGSLRHFRIWGCPA 683

Query: 61  HVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVPTNAIFLKEDHIREHKPRS 120
           HVLE NPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFV TNA FL+EDHIREHKPRS
Sbjct: 684 HVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVSTNATFLEEDHIREHKPRS 743

Query: 121 KIVLNELSNETTEPS----------TRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYM 180
           KIVLNELS ETTEPS          TRVVH+ SST  HQPQSLREPRRSGRVTN+PI YM
Sbjct: 744 KIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRTHQPQSLREPRRSGRVTNLPIRYM 803

Query: 181 SLTKTLTVIFNNNIEDPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKP 240
           SLT+TLTVI + +IEDPLTFKKAMEDVDKDEWIKAMNL+LESMYFNSVWDLVDQPD +KP
Sbjct: 804 SLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKP 863

Query: 241 IGCKWIYKRKKGADGNIQTFKARLVANGYT 261
           IGCKWIYKRK+GADG +QTFKARLVA GYT
Sbjct: 864 IGCKWIYKRKRGADGKVQTFKARLVAKGYT 893

[Close]

BLAST of Cmc11g0302071 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 479.9 bits (1234), Expect = 1.3e-131
Identity = 230/270 (85.19%), Postives = 240/270 (88.89%), Query Frame = 0


Query: 1   MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLA 60
           MVRSMMSYAHLPNSFWGY VQT VYILNCVPSKSVSETPLKLWN  KGSL HFR WGC A
Sbjct: 624 MVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSETPLKLWNGRKGSLRHFRIWGCPA 683

Query: 61  HVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVPTNAIFLKEDHIREHKPRS 120
           HVLE NPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFV TNA FL+EDHIREHKPRS
Sbjct: 684 HVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVSTNATFLEEDHIREHKPRS 743

Query: 121 KIVLNELSNETTEPS----------TRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYM 180
           KIVLNELS ETTEPS          TRVVH+ SST  HQPQSLREPRRSGRVTN+PI YM
Sbjct: 744 KIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRTHQPQSLREPRRSGRVTNLPIRYM 803

Query: 181 SLTKTLTVIFNNNIEDPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKP 240
           SLT+TLTVI + +IEDPLTFKKAMEDVDKDEWIKAMNL+LESMYFNSVWDLVDQPD +KP
Sbjct: 804 SLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKP 863

Query: 241 IGCKWIYKRKKGADGNIQTFKARLVANGYT 261
           IGCKWIYKRK+GADG +QTFKARLVA GYT
Sbjct: 864 IGCKWIYKRKRGADGKVQTFKARLVAKGYT 893

[Close]

BLAST of Cmc11g0302071 vs. NCBI nr
Match: KAA0035879.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051221.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051893.1 gag/pol protein [Cucumis melo var. makuwa] >TYK00551.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 479.9 bits (1234), Expect = 1.3e-131
Identity = 230/270 (85.19%), Postives = 240/270 (88.89%), Query Frame = 0


Query: 1   MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLA 60
           MVRSMMSYAHLPNSFWGY VQT VYILNCVPSKSVSETPLKLWN  KGSL HFR WGC A
Sbjct: 624 MVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSETPLKLWNGRKGSLRHFRIWGCPA 683

Query: 61  HVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVPTNAIFLKEDHIREHKPRS 120
           HVLE NPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFV TNA FL+EDHIREHKPRS
Sbjct: 684 HVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVSTNATFLEEDHIREHKPRS 743

Query: 121 KIVLNELSNETTEPS----------TRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYM 180
           KIVLNELS ETTEPS          TRVVH+ SST  HQPQSLREPRRSGRVTN+PI YM
Sbjct: 744 KIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRTHQPQSLREPRRSGRVTNLPIRYM 803

Query: 181 SLTKTLTVIFNNNIEDPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKP 240
           SLT+TLTVI + +IEDPLTFKKAMEDVDKDEWIKAMNL+LESMYFNSVWDLVDQPD +KP
Sbjct: 804 SLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKP 863

Query: 241 IGCKWIYKRKKGADGNIQTFKARLVANGYT 261
           IGCKWIYKRK+GADG +QTFKARLVA GYT
Sbjct: 864 IGCKWIYKRKRGADGKVQTFKARLVAKGYT 893

[Close]

BLAST of Cmc11g0302071 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-27
Identity = 90/293 (30.72%), Postives = 138/293 (47.10%), Query Frame = 0


Query: 2   VRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVS-ETPLKLWNDHKGSLHHFRTWGC-- 61
           VRSM+  A LP SFWG  VQT  Y++N  PS  ++ E P ++W + + S  H + +GC  
Sbjct: 596 VRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRA 655

Query: 62  LAHVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVPTNAIFLKEDHIREHKP 121
            AHV +    KL+ +S  C+F+GY     G   +DP   KV    + +F +E  +R    
Sbjct: 656 FAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVF-RESEVRTAAD 715

Query: 122 RSKIVLNE-LSNETTEPST--RVVHIDSSTG------------IHQPQSLREP------- 181
            S+ V N  + N  T PST       +S+T             I Q + L E        
Sbjct: 716 MSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEHP 775

Query: 182 ----------RRSGRVTNVPIHYMSLTKTLTVIFNNNIEDPLTFKKAMEDVDKDEWIKAM 241
                     RRS R       Y S    L     ++  +P + K+ +   +K++ +KAM
Sbjct: 776 TQGEEQHQPLRRSERPRVESRRYPSTEYVLI----SDDREPESLKEVLSHPEKNQLMKAM 835

Query: 242 NLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGY 260
             ++ES+  N  + LV+ P   +P+ CKW++K KK  D  +  +KARLV  G+
Sbjct: 836 QEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGF 883

[Close]

BLAST of Cmc11g0302071 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 89.7 bits (221), Expect = 5.1e-17
Identity = 93/371 (25.07%), Postives = 142/371 (38.27%), Query Frame = 0


Query: 3   RSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSV---SETPLKLWNDHKGSLHHFRTWGCL 62
           R+M+S A L  SFWG  V T  Y++N +PS+++   S+TP ++W++ K  L H R +G  
Sbjct: 597 RTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGAT 656

Query: 63  AHV-LETNPKKLEPRSKLCLFVGY-PKG--------------------------TRGGYF 122
            +V ++    K + +S   +FVGY P G                          +R   F
Sbjct: 657 VYVHIKNKQGKFDDKSFKSIFVGYEPNGFKLWDAVNEKFIVARDVVVDETNMVNSRAVKF 716

Query: 123 YD--------------PKDNKVFVPT----------NAIFLKEDHIREHK----PRSKIV 182
                           P D++  + T          N  FLK+    E+K       KI+
Sbjct: 717 ETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESENKNFPNDSRKII 776

Query: 183 LNELSNETTE----------------------PSTRVVHIDSSTGIHQPQSLREP----- 242
             E  NE+ E                         R  H++ S G   P   RE      
Sbjct: 777 QTEFPNESKECDNIQFLKDSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEH 836

Query: 243 -------------------RRSGRVTNVP-IHY----MSLTKTLT---VIFNNNIEDPLT 261
                              RRS R+   P I Y     SL K +     IFN   + P +
Sbjct: 837 LKEIGIDNPTKNDGIEIINRRSERLKTKPQISYNEEDNSLNKVVLNAHTIFN---DVPNS 896

[Close]

BLAST of Cmc11g0302071 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-09
Identity = 30/75 (40.00%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 186  DPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLV-DQPDEIKPIGCKWIYKRKKGAD 245
            +P T  +AM+D   D W +AM  ++ +   N  WDLV   P  +  +GC+WI+ +K  +D
Sbjct: 938  EPRTAIQAMKD---DRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSD 997

Query: 246  GNIQTFKARLVANGY 260
            G++  +KARLVA GY
Sbjct: 998  GSLNRYKARLVAKGY 1009

[Close]

BLAST of Cmc11g0302071 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.8e-09
Identity = 28/75 (37.33%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 186  DPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLV-DQPDEIKPIGCKWIYKRKKGAD 245
            +P T  +A++D   + W  AM  ++ +   N  WDLV   P  +  +GC+WI+ +K  +D
Sbjct: 955  EPRTAIQALKD---ERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSD 1014

Query: 246  GNIQTFKARLVANGY 260
            G++  +KARLVA GY
Sbjct: 1015 GSLNRYKARLVAKGY 1026

[Close]

BLAST of Cmc11g0302071 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-07
Identity = 32/89 (35.96%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 171 SLTKTLTVIFNNNIEDPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKP 230
           SLT T T+      ++P +   A++D     W +AM  +L+++  N  W LV  P     
Sbjct: 17  SLTITTTI-----KKEPKSVIFALKD---PGWCQAMQEELDALSRNKTWILVPPPVNQNI 76

Query: 231 IGCKWIYKRKKGADGNIQTFKARLVANGY 260
           +GCKW++K K  +DG +   KARLVA G+
Sbjct: 77  LGCKWVFKTKLHSDGTLDRLKARLVAKGF 97

[Close]

BLAST of Cmc11g0302071 vs. ExPASy TrEMBL
Match: A0A5A7SNP8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G002160 PE=4 SV=1)

HSP 1 Score: 482.6 bits (1241), Expect = 1.0e-132
Identity = 231/270 (85.56%), Postives = 241/270 (89.26%), Query Frame = 0


Query: 1   MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLA 60
           MVRSMMSYAHLPNSFWGY VQT VYILNCVPSKSVSETPLKLWN HKGSL HFR WGC A
Sbjct: 483 MVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSETPLKLWNGHKGSLRHFRIWGCPA 542

Query: 61  HVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVPTNAIFLKEDHIREHKPRS 120
           HVLE NPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFV TNA FL+EDHIREHKPRS
Sbjct: 543 HVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVSTNATFLEEDHIREHKPRS 602

Query: 121 KIVLNELSNETTEPST----------RVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYM 180
           KIVLNELS ETTEPST          RVVH+ SST  HQPQSLREPRRSGRVTN+PI YM
Sbjct: 603 KIVLNELSKETTEPSTRVVEEPSALIRVVHVRSSTRTHQPQSLREPRRSGRVTNLPIRYM 662

Query: 181 SLTKTLTVIFNNNIEDPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKP 240
           SLT+TLTVI + +IEDPLTFKKAMEDVDKDEWIKAMNL+LESMYFNSVWDLVDQPD +KP
Sbjct: 663 SLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKP 722

Query: 241 IGCKWIYKRKKGADGNIQTFKARLVANGYT 261
           IGCKWIYKRK+GADG +QTFKARLVA GYT
Sbjct: 723 IGCKWIYKRKRGADGKVQTFKARLVAKGYT 752

[Close]

BLAST of Cmc11g0302071 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 6.5e-132
Identity = 230/270 (85.19%), Postives = 240/270 (88.89%), Query Frame = 0


Query: 1   MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLA 60
           MVRSMMSYAHLPNSFWGY VQT VYILNCVPSKSVSETPLKLWN  KGSL HFR WGC A
Sbjct: 624 MVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSETPLKLWNGRKGSLRHFRIWGCPA 683

Query: 61  HVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVPTNAIFLKEDHIREHKPRS 120
           HVLE NPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFV TNA FL+EDHIREHKPRS
Sbjct: 684 HVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVSTNATFLEEDHIREHKPRS 743

Query: 121 KIVLNELSNETTEPS----------TRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYM 180
           KIVLNELS ETTEPS          TRVVH+ SST  HQPQSLREPRRSGRVTN+PI YM
Sbjct: 744 KIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRTHQPQSLREPRRSGRVTNLPIRYM 803

Query: 181 SLTKTLTVIFNNNIEDPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKP 240
           SLT+TLTVI + +IEDPLTFKKAMEDVDKDEWIKAMNL+LESMYFNSVWDLVDQPD +KP
Sbjct: 804 SLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKP 863

Query: 241 IGCKWIYKRKKGADGNIQTFKARLVANGYT 261
           IGCKWIYKRK+GADG +QTFKARLVA GYT
Sbjct: 864 IGCKWIYKRKRGADGKVQTFKARLVAKGYT 893

[Close]

BLAST of Cmc11g0302071 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 6.5e-132
Identity = 230/270 (85.19%), Postives = 240/270 (88.89%), Query Frame = 0


Query: 1   MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLA 60
           MVRSMMSYAHLPNSFWGY VQT VYILNCVPSKSVSETPLKLWN  KGSL HFR WGC A
Sbjct: 624 MVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSETPLKLWNGRKGSLRHFRIWGCPA 683

Query: 61  HVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVPTNAIFLKEDHIREHKPRS 120
           HVLE NPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFV TNA FL+EDHIREHKPRS
Sbjct: 684 HVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVSTNATFLEEDHIREHKPRS 743

Query: 121 KIVLNELSNETTEPS----------TRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYM 180
           KIVLNELS ETTEPS          TRVVH+ SST  HQPQSLREPRRSGRVTN+PI YM
Sbjct: 744 KIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRTHQPQSLREPRRSGRVTNLPIRYM 803

Query: 181 SLTKTLTVIFNNNIEDPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKP 240
           SLT+TLTVI + +IEDPLTFKKAMEDVDKDEWIKAMNL+LESMYFNSVWDLVDQPD +KP
Sbjct: 804 SLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKP 863

Query: 241 IGCKWIYKRKKGADGNIQTFKARLVANGYT 261
           IGCKWIYKRK+GADG +QTFKARLVA GYT
Sbjct: 864 IGCKWIYKRKRGADGKVQTFKARLVAKGYT 893

[Close]

BLAST of Cmc11g0302071 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 6.5e-132
Identity = 230/270 (85.19%), Postives = 240/270 (88.89%), Query Frame = 0


Query: 1    MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLA 60
            MVRSMMSYAHLPNSFWGY VQT VYILNCVPSKSVSETPLKLWN  KGSL HFR WGC A
Sbjct: 741  MVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSETPLKLWNGRKGSLRHFRIWGCPA 800

Query: 61   HVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVPTNAIFLKEDHIREHKPRS 120
            HVLE NPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFV TNA FL+EDHIREHKPRS
Sbjct: 801  HVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVSTNATFLEEDHIREHKPRS 860

Query: 121  KIVLNELSNETTEPS----------TRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYM 180
            KIVLNELS ETTEPS          TRVVH+ SST  HQPQSLREPRRSGRVTN+PI YM
Sbjct: 861  KIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRTHQPQSLREPRRSGRVTNLPIRYM 920

Query: 181  SLTKTLTVIFNNNIEDPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKP 240
            SLT+TLTVI + +IEDPLTFKKAMEDVDKDEWIKAMNL+LESMYFNSVWDLVDQPD +KP
Sbjct: 921  SLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKP 980

Query: 241  IGCKWIYKRKKGADGNIQTFKARLVANGYT 261
            IGCKWIYKRK+GADG +QTFKARLVA GYT
Sbjct: 981  IGCKWIYKRKRGADGKVQTFKARLVAKGYT 1010

[Close]

BLAST of Cmc11g0302071 vs. ExPASy TrEMBL
Match: A0A5D3DS88 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G001000 PE=4 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 6.5e-132
Identity = 230/270 (85.19%), Postives = 240/270 (88.89%), Query Frame = 0


Query: 1   MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLA 60
           MVRSMMSYAHLPNSFWGY VQT VYILNCVPSKSVSETPLKLWN  KGSL HFR WGC A
Sbjct: 624 MVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSETPLKLWNGRKGSLRHFRIWGCPA 683

Query: 61  HVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVPTNAIFLKEDHIREHKPRS 120
           HVLE NPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFV TNA FL+EDHIREHKPRS
Sbjct: 684 HVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVSTNATFLEEDHIREHKPRS 743

Query: 121 KIVLNELSNETTEPS----------TRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYM 180
           KIVLNELS ETTEPS          TRVVH+ SST  HQPQSLREPRRSGRVTN+PI YM
Sbjct: 744 KIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRTHQPQSLREPRRSGRVTNLPIRYM 803

Query: 181 SLTKTLTVIFNNNIEDPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKP 240
           SLT+TLTVI + +IEDPLTFKKAMEDVDKDEWIKAMNL+LESMYFNSVWDLVDQPD +KP
Sbjct: 804 SLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKP 863

Query: 241 IGCKWIYKRKKGADGNIQTFKARLVANGYT 261
           IGCKWIYKRK+GADG +QTFKARLVA GYT
Sbjct: 864 IGCKWIYKRKRGADGKVQTFKARLVAKGYT 893

[Close]

BLAST of Cmc11g0302071 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 70.1 bits (170), Expect = 3.0e-12
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 185 EDPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGAD 244
           ++P T+ +A E +    W  AM+ ++ +M     W++   P   KPIGCKW+YK K  +D
Sbjct: 84  KEPSTYNEAKEFL---VWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSD 143

Query: 245 GNIQTFKARLVANGYT 261
           G I+ +KARLVA GYT
Sbjct: 144 GTIERYKARLVAKGYT 156

[Close]

BLAST of Cmc11g0302071 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-08
Identity = 32/89 (35.96%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 171 SLTKTLTVIFNNNIEDPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKP 230
           SLT T T+      ++P +   A++D     W +AM  +L+++  N  W LV  P     
Sbjct: 17  SLTITTTI-----KKEPKSVIFALKD---PGWCQAMQEELDALSRNKTWILVPPPVNQNI 76

Query: 231 IGCKWIYKRKKGADGNIQTFKARLVANGY 260
           +GCKW++K K  +DG +   KARLVA G+
Sbjct: 77  LGCKWVFKTKLHSDGTLDRLKARLVAKGF 97

The following BLAST results are available for this feature:

BLAST of Cmc11g0302071 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0026233.1	2.1e-132	85.56	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	1.3e-131	85.19	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	1.3e-131	85.19	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	1.3e-131	85.19	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035879.1	1.3e-131	85.19	gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumi...	[more]

BLAST of Cmc11g0302071 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.4e-27	30.72	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	5.1e-17	25.07	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.8e-09	40.00	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	8.8e-09	37.33	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92520	2.2e-07	35.96	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc11g0302071 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SNP8	1.0e-132	85.56	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00216...	[more]
A0A5A7SMH8	6.5e-132	85.19	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	6.5e-132	85.19	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7V4M1	6.5e-132	85.19	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]
A0A5D3DS88	6.5e-132	85.19	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00100...	[more]

BLAST of Cmc11g0302071 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.0e-12	42.11	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	1.5e-08	35.96	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 216..259 e-value: 1.8E-9 score: 37.6
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 2..114 coord: 175..258

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0302071.1	Cmc11g0302071.1	mRNA