Cmc11g0301991 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0301991
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr11: 22704466 .. 22708497 (-)
RNA-Seq Expression	Cmc11g0301991
Synteny	Cmc11g0301991

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAGTGCTACTTTGAATATGCTGGCTGCTGATAAACTTAATGGCAATAATTATGCATCTTGGAAAAATACTATCAACACTGTGCTAATCATCGATGACCTTAGATTTGTCCTAGTTGAGGAGTGTCCTCAAGTCCCAGCTGCTAATGCAACTCGAACTGTTCGAGAACCATATGAGCGTTGGGCCAAGGCAAATGAAAAAGCCCGAGCATACATCTTGGCAAGCTTATCTGAAGTATTGGCCAAGAAACATGAATCAATGCTCACTGCTCGTGAGATTATGGACTCCTTGCAGGAGATGTTTGGTCAGGCCTCTTATCAGATCAAGCATGATGCTCTGAAATACATTTATAATGCCCGTATGAATGAGGGAGCCTCAGTGCGAGAACATGTTCTCAATATGATGGTTCATTTCAACGTGGCAGAAATGAATGGGGTTGTCATCGATGAAGCCAGTCAGGTTAGCTTTATTTTGGAATCTCTGCCAGAGAGTTTCCTGCAATTTAGAAGCAATGCTGTTATGAATAAGATTGCTTATACCCTTACCACCCTTCTCAACGAGCTACAGACTTTTGAGTCTCTGATGAAAATCAAGGGACAGAAGGGAGAGGCAAATGTTGCTACTTCCACAAGAAAGTTCCATAGGGGTTCGACCTCAGGAACAAAGTCTATGCCTTCTTCATCTGGCAATAAGAAGTGGAAGAAGAAGAAGGGTGGCCAAGGAAATAAAGCTAACCTCGCTGCTGCTAAAACGACCAAGAAAACCAAAGCTGCAAAGGGAATATGTTTCCATTGCAACCAAGAGGGACATTGGAAGAGAAACTGTCCCAAGTACTTGGCAGAAAAGAAGAAGGCTAAACAAGGTAAATATGATTTACTAGTGCTAGAGACTTGTTTAGTGGAAAATGATGATTCAGCCTGGATAATAGATTCAGGTGCCACTAATCATGTTTGTTCTTCATTTCAGGGAATTAGTTCCTGGCGGCAGTTGGAGACTGGAGAGATGACGATGCGAGTTGGAACTGGGCATGTCGTCTCAGCAATTGCAGTGGGAGGGCTTCGACTTTGTTTACAGAAATCTTTTCTTTTATTAGAAAATGTATATGTTGTTCCTGATTTAAAAAGGAATTTGATTTCTGTAAAGTGCTTACTAGAACAATCTTACTCGTTAACTTTTAATGTAAATAAAGTGTTTATTTACAAAAATGGTGTTGAGATTTGTTCTGCAAAGTTAGAAAATAATCTTTATGTGTTAAGATCATTAACATCTAAAGCTCTTCTTAATACTGAAATGTTCAAAACTGCAATAACTCAAAATAAAAGACTTAAAATTTCTCCAAAAGAAAATGCTCATCTTTGGCACCTAAGATTAGGGCATATAAATCTCAATAGAATTGAGAGATTAGTAAAGAATGGACTTCTAAGTGAGTTAGAAGAAAATTCTTTACCTGTATGTGAGTCATGCCTTGAAGGTAAGATGACCAAAAGACCTTTTACTGGAAAAGGTCATAGGGCCAAAGAACCTCTAGAACTTGTACATTCAGATCTATGTGGTCCTATGAATGTTAAAGCAAGAGGAGGATTTGAATATTTCATCACTTTTACTGATGATTATTCAAGATATGGGTATGTTTATTTAATGCAACATAAGTCTGAAGCCCTTGAAAAGTTCAAGGAATACAAGGCTGAAGTTGAAAACGCATTAAGTAAAACTATTAAAACATTTCGATCGGATCGAGGTGGAGAGTATATGGATTTGAAATTCCAAAACTATTTGATGGAATGTGGAATTGTATCTCAACTCTCAGCACCTGGTACACCTCAACAGAATGGTGTATCAGAAAGGAGAAATCGAACCTTGTTGGACATGGTTCGGTCTATGATGAGTTACGCTCACTTACCTAATTCGTTTTGGGGTTATGCAGTGCAAACTGCAGTCTATATTTTGAATTGTGTTCCATCTAAAAGTGTTTCTGAAACACCTTTAAAATTATGGAATGGTCGTAAAGGTAGTTTACGTCATTTCAGAATTTGGGGTTGTCCAGCACACGTGCTTGAGAATAACCCTAAGAAATTGGAACCTCGTTCAAAATTATGTTTATTTGTAGGCTACCCCAAAGGAACTAGAGGTGGTTACTTCTATGATCCTAAAGATAATAAAGTGTTTGTATCGACAAATGCTACATTTTTAGAAGAGGACCACATAAGGGAGCACAAACCGCGTAGTAAGATAGTATTAAATGAACTTTCCAAAGAAACTACTGAACCTTCAACAAGAGTTGTTGAAGAGCCTAGTGCATTAACAAGAGTTGTTCATGTCGGTTCATCTACTCGGACACATCAACCTCAATCGTTGAGGGAACCTCGACGAAGTGGGAGGGTTACAAACTTACCTATTCGTTATATGAGTTTAACTGAAACCTTAACTGTCATATCTGATGGCGACATTGAGGATCCATTGACTTTTAAGAAGGCAATGGAGGATGTGGATAAAGATGAATGGATCAAAGCTATGAATCTTGAATTGGAGTCTATGTACTTCAATTCGGTCTGGGATCTTGTAGATCAACCTGATGGGGTAAAACCTATAGGTTGTAAATGGATCTACAAGAGAAAAAGAGGTGCATATGGTAAGGTACAAACTTTTAAAGCTAGACTAGTGGCAAAGGGTTATACCCAAGTTGAGGGAGTTGACTATGAGGAGACTTTCTCACCTGTTGCCATGTTAAAGTCTATTCGAATACTTTTGTCCATTGCTGCATATTTTGACTATGAGATTTGGCAAATGGATGTAAAGACTGCCTTTTTGAATGGCAATCTTGAGGAGACCATCTATATGCAACAACCAGAAGGATTCATAATTCCAGGTCAAGAGCAAAAGATTTGCAAGCTTAATCGTTCTATTTATGGATTAAAACAAGCTTCTCGATCTTGGAACATAAGATTTGATACCGCAATAAAATCTTATGGATTTGATCAAATCGTTGATGAACCTTGTGTCTACAAAAGAATCATCAACAAATCAGTAGCTTTCTTAGTTTTGTACGTAGATGATATCCTACTCATTGGGAATGATATAGGTTTACTAACTGACATCAAACAATGGCTAGCAACCCAATTTCAAATGAAAGATTTGGGAGAGGCACAATTTGTTCTGGGTATTCAGATCTTTAGAGATCGTAAGAACAAAATGCTAGCTTTGTCTCAAGCATCGTATATTGACAAAATAGTTGTTAAATATTCAATGCAAAACTCCAAGAGAGGCTTACTACCTTTCAGGCATGGAGTTACTTTGTCTAAAGAACAGTGTCCTAAGACACCTCAAGACGTTGAGGAAATGAGACATATCCCCTATGCATCAGCTGTTGGCAGCTTGATGTATGCGATGTTATGTCCTAGACCTGACATTTGTTATGCGGTGGGGATAGTCAGTAGATATCAATCTAATCCAGGATTAGCTCATTGGACTGCCGTTAAAACTATCCTCAAGTATCTTAGGAGAACGAGGGACTACACGCTTGTGTATGGTTCTAAGGATTTGATTCTTACAGGATACACAGACTCTGACTTTCAGACTGATAGAGATTCTAGGAAATCTACTTCAGGTTCAGTGTTCACTCTTAACGGAGGAGCTGTAGTTTGGAGAAGTATCAAGCAAGGATGTATTGCTGACTCCACTATGGAGGCAGAGTACGTTGCAGCTTGTGAAGCTGCCAAAGAGGCTGTTTGGCTTAGAAATTTCTTGATTGATTTGGAAGTCGTTCCAAACATGTCAAAGCCAATTACTCTTTACTGTGATAATAGTGGGGCTGTGGCTAATTCTAGGGAGCCCAGAAGCCACAAGCGTGGAAAGCATATTGAGCGCAAGTATCACTTGATTCGAGAGATAGTGCATCGAGGGGACGTGATCGTCACACAGATAGCTTCGACACACAATGTTGCTGATCCGTTTACAAAGCCCCTCACGGCTAAGGTGTTTGAGGGTCACCTAGAGAGTCTGGGTCTACGTGACATGCCACATTTAACCTAG

mRNA sequence

ATGACGAGTGCTACTTTGAATATGCTGGCTGCTGATAAACTTAATGGCAATAATTATGCATCTTGGAAAAATACTATCAACACTGTGCTAATCATCGATGACCTTAGATTTGTCCTAGTTGAGGAGTGTCCTCAAGTCCCAGCTGCTAATGCAACTCGAACTGTTCGAGAACCATATGAGCGTTGGGCCAAGGCAAATGAAAAAGCCCGAGCATACATCTTGGCAAGCTTATCTGAAGTATTGGCCAAGAAACATGAATCAATGCTCACTGCTCGTGAGATTATGGACTCCTTGCAGGAGATGTTTGGTCAGGCCTCTTATCAGATCAAGCATGATGCTCTGAAATACATTTATAATGCCCGTATGAATGAGGGAGCCTCAGTGCGAGAACATGTTCTCAATATGATGGTTCATTTCAACGTGGCAGAAATGAATGGGGTTGTCATCGATGAAGCCAGTCAGGTTAGCTTTATTTTGGAATCTCTGCCAGAGAGTTTCCTGCAATTTAGAAGCAATGCTGTTATGAATAAGATTGCTTATACCCTTACCACCCTTCTCAACGAGCTACAGACTTTTGAGTCTCTGATGAAAATCAAGGGACAGAAGGGAGAGGCAAATGTTGCTACTTCCACAAGAAAGTTCCATAGGGGTTCGACCTCAGGAACAAAGTCTATGCCTTCTTCATCTGGCAATAAGAAGTGGAAGAAGAAGAAGGGTGGCCAAGGAAATAAAGCTAACCTCGCTGCTGCTAAAACGACCAAGAAAACCAAAGCTGCAAAGGGAATATGTTTCCATTGCAACCAAGAGGGACATTGGAAGAGAAACTGTCCCAAGTACTTGGCAGAAAAGAAGAAGGCTAAACAAGGTAAATATGATTTACTAGTGCTAGAGACTTGTTTAGTGGAAAATGATGATTCAGCCTGGATAATAGATTCAGGTGCCACTAATCATGTTTGTTCTTCATTTCAGGGAATTAGTTCCTGGCGGCAGTTGGAGACTGGAGAGATGACGATGCGAGTTGGAACTGGGCATGTCGTCTCAGCAATTGCAGTGGGAGGGCTTCGACTTTGTTTACAGAAATCTTTTCTTTTATTAGAAAATGTATATGTTGTTCCTGATTTAAAAAGGAATTTGATTTCTGTAAAGTGCTTACTAGAACAATCTTACTCGTTAACTTTTAATGTAAATAAAGTGTTTATTTACAAAAATGGTGTTGAGATTTGTTCTGCAAAGTTAGAAAATAATCTTTATGTGTTAAGATCATTAACATCTAAAGCTCTTCTTAATACTGAAATGTTCAAAACTGCAATAACTCAAAATAAAAGACTTAAAATTTCTCCAAAAGAAAATGCTCATCTTTGGCACCTAAGATTAGGGCATATAAATCTCAATAGAATTGAGAGATTAGTAAAGAATGGACTTCTAAGTGAGTTAGAAGAAAATTCTTTACCTGTATGTGAGTCATGCCTTGAAGGTAAGATGACCAAAAGACCTTTTACTGGAAAAGGTCATAGGGCCAAAGAACCTCTAGAACTTGTACATTCAGATCTATGTGGTCCTATGAATGTTAAAGCAAGAGGAGGATTTGAATATTTCATCACTTTTACTGATGATTATTCAAGATATGGGTATGTTTATTTAATGCAACATAAGTCTGAAGCCCTTGAAAAGTTCAAGGAATACAAGGCTGAAGTTGAAAACGCATTAAGTAAAACTATTAAAACATTTCGATCGGATCGAGGTGGAGAGTATATGGATTTGAAATTCCAAAACTATTTGATGGAATGTGGAATTGTATCTCAACTCTCAGCACCTGGTACACCTCAACAGAATGGTGTATCAGAAAGGAGAAATCGAACCTTGTTGGACATGGTTCGGTCTATGATGAGTTACGCTCACTTACCTAATTCGTTTTGGGGTTATGCAGTGCAAACTGCAGTCTATATTTTGAATTGTGTTCCATCTAAAAGTGTTTCTGAAACACCTTTAAAATTATGGAATGGTCGTAAAGGTAGTTTACGTCATTTCAGAATTTGGGGTTGTCCAGCACACGTGCTTGAGAATAACCCTAAGAAATTGGAACCTCGTTCAAAATTATGTTTATTTGTAGGCTACCCCAAAGGAACTAGAGGTGGTTACTTCTATGATCCTAAAGATAATAAAGTGTTTGTATCGACAAATGCTACATTTTTAGAAGAGGACCACATAAGGGAGCACAAACCGCGTAGTAAGATAGTATTAAATGAACTTTCCAAAGAAACTACTGAACCTTCAACAAGAGTTGTTGAAGAGCCTAGTGCATTAACAAGAGTTGTTCATGTCGGTTCATCTACTCGGACACATCAACCTCAATCGTTGAGGGAACCTCGACGAAGTGGGAGGGTTACAAACTTACCTATTCGTTATATGAGTTTAACTGAAACCTTAACTGTCATATCTGATGGCGACATTGAGGATCCATTGACTTTTAAGAAGGCAATGGAGGATGTGGATAAAGATGAATGGATCAAAGCTATGAATCTTGAATTGGAGTCTATGTACTTCAATTCGGTCTGGGATCTTGTAGATCAACCTGATGGGGTAAAACCTATAGGTTGTAAATGGATCTACAAGAGAAAAAGAGGTGCATATGGTAAGGTACAAACTTTTAAAGCTAGACTAGTGGCAAAGGGTTATACCCAAGTTGAGGGAGTTGACTATGAGGAGACTTTCTCACCTGTTGCCATGTTAAAGTCTATTCGAATACTTTTGTCCATTGCTGCATATTTTGACTATGAGATTTGGCAAATGGATGTAAAGACTGCCTTTTTGAATGGCAATCTTGAGGAGACCATCTATATGCAACAACCAGAAGGATTCATAATTCCAGGTCAAGAGCAAAAGATTTGCAAGCTTAATCGTTCTATTTATGGATTAAAACAAGCTTCTCGATCTTGGAACATAAGATTTGATACCGCAATAAAATCTTATGGATTTGATCAAATCGTTGATGAACCTTGTGTCTACAAAAGAATCATCAACAAATCAGTAGCTTTCTTAGTTTTGTACGTAGATGATATCCTACTCATTGGGAATGATATAGGTTTACTAACTGACATCAAACAATGGCTAGCAACCCAATTTCAAATGAAAGATTTGGGAGAGGCACAATTTGTTCTGGGTATTCAGATCTTTAGAGATCGTAAGAACAAAATGCTAGCTTTGTCTCAAGCATCGTATATTGACAAAATAGTTGTTAAATATTCAATGCAAAACTCCAAGAGAGGCTTACTACCTTTCAGGCATGGAGTTACTTTGTCTAAAGAACAGTGTCCTAAGACACCTCAAGACGTTGAGGAAATGAGACATATCCCCTATGCATCAGCTGTTGGCAGCTTGATGTATGCGATGTTATGTCCTAGACCTGACATTTGTTATGCGGTGGGGATAGTCAGTAGATATCAATCTAATCCAGGATTAGCTCATTGGACTGCCGTTAAAACTATCCTCAAGTATCTTAGGAGAACGAGGGACTACACGCTTGTGTATGGTTCTAAGGATTTGATTCTTACAGGATACACAGACTCTGACTTTCAGACTGATAGAGATTCTAGGAAATCTACTTCAGGTTCAGTGTTCACTCTTAACGGAGGAGCTGTAGTTTGGAGAAGTATCAAGCAAGGATGTATTGCTGACTCCACTATGGAGGCAGAGTACGTTGCAGCTTGTGAAGCTGCCAAAGAGGCTGTTTGGCTTAGAAATTTCTTGATTGATTTGGAAGTCGTTCCAAACATGTCAAAGCCAATTACTCTTTACTGTGATAATAGTGGGGCTGTGGCTAATTCTAGGGAGCCCAGAAGCCACAAGCGTGGAAAGCATATTGAGCGCAAGTATCACTTGATTCGAGAGATAGTGCATCGAGGGGACGTGATCGTCACACAGATAGCTTCGACACACAATGTTGCTGATCCGTTTACAAAGCCCCTCACGGCTAAGGTGTTTGAGGGTCACCTAGAGAGTCTGGGTCTACGTGACATGCCACATTTAACCTAG

Coding sequence (CDS)

ATGACGAGTGCTACTTTGAATATGCTGGCTGCTGATAAACTTAATGGCAATAATTATGCATCTTGGAAAAATACTATCAACACTGTGCTAATCATCGATGACCTTAGATTTGTCCTAGTTGAGGAGTGTCCTCAAGTCCCAGCTGCTAATGCAACTCGAACTGTTCGAGAACCATATGAGCGTTGGGCCAAGGCAAATGAAAAAGCCCGAGCATACATCTTGGCAAGCTTATCTGAAGTATTGGCCAAGAAACATGAATCAATGCTCACTGCTCGTGAGATTATGGACTCCTTGCAGGAGATGTTTGGTCAGGCCTCTTATCAGATCAAGCATGATGCTCTGAAATACATTTATAATGCCCGTATGAATGAGGGAGCCTCAGTGCGAGAACATGTTCTCAATATGATGGTTCATTTCAACGTGGCAGAAATGAATGGGGTTGTCATCGATGAAGCCAGTCAGGTTAGCTTTATTTTGGAATCTCTGCCAGAGAGTTTCCTGCAATTTAGAAGCAATGCTGTTATGAATAAGATTGCTTATACCCTTACCACCCTTCTCAACGAGCTACAGACTTTTGAGTCTCTGATGAAAATCAAGGGACAGAAGGGAGAGGCAAATGTTGCTACTTCCACAAGAAAGTTCCATAGGGGTTCGACCTCAGGAACAAAGTCTATGCCTTCTTCATCTGGCAATAAGAAGTGGAAGAAGAAGAAGGGTGGCCAAGGAAATAAAGCTAACCTCGCTGCTGCTAAAACGACCAAGAAAACCAAAGCTGCAAAGGGAATATGTTTCCATTGCAACCAAGAGGGACATTGGAAGAGAAACTGTCCCAAGTACTTGGCAGAAAAGAAGAAGGCTAAACAAGGTAAATATGATTTACTAGTGCTAGAGACTTGTTTAGTGGAAAATGATGATTCAGCCTGGATAATAGATTCAGGTGCCACTAATCATGTTTGTTCTTCATTTCAGGGAATTAGTTCCTGGCGGCAGTTGGAGACTGGAGAGATGACGATGCGAGTTGGAACTGGGCATGTCGTCTCAGCAATTGCAGTGGGAGGGCTTCGACTTTGTTTACAGAAATCTTTTCTTTTATTAGAAAATGTATATGTTGTTCCTGATTTAAAAAGGAATTTGATTTCTGTAAAGTGCTTACTAGAACAATCTTACTCGTTAACTTTTAATGTAAATAAAGTGTTTATTTACAAAAATGGTGTTGAGATTTGTTCTGCAAAGTTAGAAAATAATCTTTATGTGTTAAGATCATTAACATCTAAAGCTCTTCTTAATACTGAAATGTTCAAAACTGCAATAACTCAAAATAAAAGACTTAAAATTTCTCCAAAAGAAAATGCTCATCTTTGGCACCTAAGATTAGGGCATATAAATCTCAATAGAATTGAGAGATTAGTAAAGAATGGACTTCTAAGTGAGTTAGAAGAAAATTCTTTACCTGTATGTGAGTCATGCCTTGAAGGTAAGATGACCAAAAGACCTTTTACTGGAAAAGGTCATAGGGCCAAAGAACCTCTAGAACTTGTACATTCAGATCTATGTGGTCCTATGAATGTTAAAGCAAGAGGAGGATTTGAATATTTCATCACTTTTACTGATGATTATTCAAGATATGGGTATGTTTATTTAATGCAACATAAGTCTGAAGCCCTTGAAAAGTTCAAGGAATACAAGGCTGAAGTTGAAAACGCATTAAGTAAAACTATTAAAACATTTCGATCGGATCGAGGTGGAGAGTATATGGATTTGAAATTCCAAAACTATTTGATGGAATGTGGAATTGTATCTCAACTCTCAGCACCTGGTACACCTCAACAGAATGGTGTATCAGAAAGGAGAAATCGAACCTTGTTGGACATGGTTCGGTCTATGATGAGTTACGCTCACTTACCTAATTCGTTTTGGGGTTATGCAGTGCAAACTGCAGTCTATATTTTGAATTGTGTTCCATCTAAAAGTGTTTCTGAAACACCTTTAAAATTATGGAATGGTCGTAAAGGTAGTTTACGTCATTTCAGAATTTGGGGTTGTCCAGCACACGTGCTTGAGAATAACCCTAAGAAATTGGAACCTCGTTCAAAATTATGTTTATTTGTAGGCTACCCCAAAGGAACTAGAGGTGGTTACTTCTATGATCCTAAAGATAATAAAGTGTTTGTATCGACAAATGCTACATTTTTAGAAGAGGACCACATAAGGGAGCACAAACCGCGTAGTAAGATAGTATTAAATGAACTTTCCAAAGAAACTACTGAACCTTCAACAAGAGTTGTTGAAGAGCCTAGTGCATTAACAAGAGTTGTTCATGTCGGTTCATCTACTCGGACACATCAACCTCAATCGTTGAGGGAACCTCGACGAAGTGGGAGGGTTACAAACTTACCTATTCGTTATATGAGTTTAACTGAAACCTTAACTGTCATATCTGATGGCGACATTGAGGATCCATTGACTTTTAAGAAGGCAATGGAGGATGTGGATAAAGATGAATGGATCAAAGCTATGAATCTTGAATTGGAGTCTATGTACTTCAATTCGGTCTGGGATCTTGTAGATCAACCTGATGGGGTAAAACCTATAGGTTGTAAATGGATCTACAAGAGAAAAAGAGGTGCATATGGTAAGGTACAAACTTTTAAAGCTAGACTAGTGGCAAAGGGTTATACCCAAGTTGAGGGAGTTGACTATGAGGAGACTTTCTCACCTGTTGCCATGTTAAAGTCTATTCGAATACTTTTGTCCATTGCTGCATATTTTGACTATGAGATTTGGCAAATGGATGTAAAGACTGCCTTTTTGAATGGCAATCTTGAGGAGACCATCTATATGCAACAACCAGAAGGATTCATAATTCCAGGTCAAGAGCAAAAGATTTGCAAGCTTAATCGTTCTATTTATGGATTAAAACAAGCTTCTCGATCTTGGAACATAAGATTTGATACCGCAATAAAATCTTATGGATTTGATCAAATCGTTGATGAACCTTGTGTCTACAAAAGAATCATCAACAAATCAGTAGCTTTCTTAGTTTTGTACGTAGATGATATCCTACTCATTGGGAATGATATAGGTTTACTAACTGACATCAAACAATGGCTAGCAACCCAATTTCAAATGAAAGATTTGGGAGAGGCACAATTTGTTCTGGGTATTCAGATCTTTAGAGATCGTAAGAACAAAATGCTAGCTTTGTCTCAAGCATCGTATATTGACAAAATAGTTGTTAAATATTCAATGCAAAACTCCAAGAGAGGCTTACTACCTTTCAGGCATGGAGTTACTTTGTCTAAAGAACAGTGTCCTAAGACACCTCAAGACGTTGAGGAAATGAGACATATCCCCTATGCATCAGCTGTTGGCAGCTTGATGTATGCGATGTTATGTCCTAGACCTGACATTTGTTATGCGGTGGGGATAGTCAGTAGATATCAATCTAATCCAGGATTAGCTCATTGGACTGCCGTTAAAACTATCCTCAAGTATCTTAGGAGAACGAGGGACTACACGCTTGTGTATGGTTCTAAGGATTTGATTCTTACAGGATACACAGACTCTGACTTTCAGACTGATAGAGATTCTAGGAAATCTACTTCAGGTTCAGTGTTCACTCTTAACGGAGGAGCTGTAGTTTGGAGAAGTATCAAGCAAGGATGTATTGCTGACTCCACTATGGAGGCAGAGTACGTTGCAGCTTGTGAAGCTGCCAAAGAGGCTGTTTGGCTTAGAAATTTCTTGATTGATTTGGAAGTCGTTCCAAACATGTCAAAGCCAATTACTCTTTACTGTGATAATAGTGGGGCTGTGGCTAATTCTAGGGAGCCCAGAAGCCACAAGCGTGGAAAGCATATTGAGCGCAAGTATCACTTGATTCGAGAGATAGTGCATCGAGGGGACGTGATCGTCACACAGATAGCTTCGACACACAATGTTGCTGATCCGTTTACAAAGCCCCTCACGGCTAAGGTGTTTGAGGGTCACCTAGAGAGTCTGGGTCTACGTGACATGCCACATTTAACCTAG

Protein sequence

MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGVVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSETPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRTHQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGAYGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLCPRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHLT

Homology

[Close]

BLAST of Cmc11g0301991 vs. NCBI nr
Match: KAA0035879.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051221.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051893.1 gag/pol protein [Cucumis melo var. makuwa] >TYK00551.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 2676.0 bits (6935), Expect = 0.0e+00
Identity = 1340/1343 (99.78%), Postives = 1340/1343 (99.78%), Query Frame = 0


Query: 1    MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
            MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE
Sbjct: 1    MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61   RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
            RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA
Sbjct: 61   RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121  RMNEGASVREHVLNMMVHFNVAEMNGVVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180
            RMNEGASVREHVLNMMVHFNVAEMNG VIDEASQVSFILESLPESFLQFRSNAVMNKIAY
Sbjct: 121  RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181  TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240
            TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG
Sbjct: 181  TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 241  QGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300
            QGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL
Sbjct: 241  QGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300

Query: 301  VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK 360
            VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK
Sbjct: 301  VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK 360

Query: 361  SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR 420
            SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR
Sbjct: 361  SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR 420

Query: 421  SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE 480
            SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE
Sbjct: 421  SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE 480

Query: 481  NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS 540
            NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS
Sbjct: 481  NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS 540

Query: 541  RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS 600
            RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS
Sbjct: 541  RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS 600

Query: 601  QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE 660
            QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE
Sbjct: 601  QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE 660

Query: 661  TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN 720
            TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN
Sbjct: 661  TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN 720

Query: 721  KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT 780
            KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT
Sbjct: 721  KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT 780

Query: 781  HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN 840
            HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN
Sbjct: 781  HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN 840

Query: 841  LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGAYGKVQTFKARLVAKGYTQVEGVDY 900
            LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGA GKVQTFKARLVAKGYTQVEGVDY
Sbjct: 841  LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDY 900

Query: 901  EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ 960
            EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ
Sbjct: 901  EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ 960

Query: 961  KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI 1020
            KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI
Sbjct: 961  KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI 1020

Query: 1021 LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK 1080
            LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK
Sbjct: 1021 LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK 1080

Query: 1081 YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLCPRPDICYA 1140
            YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLC RPDICYA
Sbjct: 1081 YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYA 1140

Query: 1141 VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS 1200
            VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS
Sbjct: 1141 VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS 1200

Query: 1201 TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK 1260
            TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK
Sbjct: 1201 TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK 1260

Query: 1261 PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK 1320
            PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK
Sbjct: 1261 PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK 1320

Query: 1321 PLTAKVFEGHLESLGLRDMPHLT 1344
            PLTAKVFEGHLESLGLRDMPHLT
Sbjct: 1321 PLTAKVFEGHLESLGLRDMPHLT 1343

[Close]

BLAST of Cmc11g0301991 vs. NCBI nr
Match: KAA0031826.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0032384.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0039313.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0043789.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0048789.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 2674.0 bits (6930), Expect = 0.0e+00
Identity = 1339/1343 (99.70%), Postives = 1339/1343 (99.70%), Query Frame = 0


Query: 1    MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
            MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE
Sbjct: 1    MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61   RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
            RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA
Sbjct: 61   RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121  RMNEGASVREHVLNMMVHFNVAEMNGVVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180
            RMNEGASVREHVLNMMVHFNVAEMNG VIDEASQVSFILESLPESFLQFRSNAVMNKIAY
Sbjct: 121  RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181  TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240
            TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG
Sbjct: 181  TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 241  QGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300
            QGNKANLAAAKTTKK KAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL
Sbjct: 241  QGNKANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300

Query: 301  VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK 360
            VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK
Sbjct: 301  VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK 360

Query: 361  SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR 420
            SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR
Sbjct: 361  SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR 420

Query: 421  SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE 480
            SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE
Sbjct: 421  SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE 480

Query: 481  NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS 540
            NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS
Sbjct: 481  NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS 540

Query: 541  RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS 600
            RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS
Sbjct: 541  RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS 600

Query: 601  QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE 660
            QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE
Sbjct: 601  QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE 660

Query: 661  TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN 720
            TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN
Sbjct: 661  TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN 720

Query: 721  KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT 780
            KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT
Sbjct: 721  KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT 780

Query: 781  HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN 840
            HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN
Sbjct: 781  HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN 840

Query: 841  LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGAYGKVQTFKARLVAKGYTQVEGVDY 900
            LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGA GKVQTFKARLVAKGYTQVEGVDY
Sbjct: 841  LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDY 900

Query: 901  EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ 960
            EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ
Sbjct: 901  EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ 960

Query: 961  KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI 1020
            KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI
Sbjct: 961  KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI 1020

Query: 1021 LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK 1080
            LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK
Sbjct: 1021 LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK 1080

Query: 1081 YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLCPRPDICYA 1140
            YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLC RPDICYA
Sbjct: 1081 YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYA 1140

Query: 1141 VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS 1200
            VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS
Sbjct: 1141 VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS 1200

Query: 1201 TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK 1260
            TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK
Sbjct: 1201 TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK 1260

Query: 1261 PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK 1320
            PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK
Sbjct: 1261 PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK 1320

Query: 1321 PLTAKVFEGHLESLGLRDMPHLT 1344
            PLTAKVFEGHLESLGLRDMPHLT
Sbjct: 1321 PLTAKVFEGHLESLGLRDMPHLT 1343

[Close]

BLAST of Cmc11g0301991 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 2668.3 bits (6915), Expect = 0.0e+00
Identity = 1338/1343 (99.63%), Postives = 1338/1343 (99.63%), Query Frame = 0


Query: 1    MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
            MTSATLNMLAADKLNGNNYASWKNT NTVLIIDDLRFVLVEECPQVPAANATRTVREPYE
Sbjct: 1    MTSATLNMLAADKLNGNNYASWKNT-NTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61   RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
            RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA
Sbjct: 61   RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121  RMNEGASVREHVLNMMVHFNVAEMNGVVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180
            RMNEGASVREHVLNMMVHFNVAEMNG VIDEASQVSFILESLPESFLQFRSNAVMNKIAY
Sbjct: 121  RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181  TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240
            TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG
Sbjct: 181  TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 241  QGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300
            QGNKANLAAAKTTKK KAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL
Sbjct: 241  QGNKANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300

Query: 301  VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK 360
            VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK
Sbjct: 301  VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK 360

Query: 361  SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR 420
            SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR
Sbjct: 361  SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR 420

Query: 421  SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE 480
            SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE
Sbjct: 421  SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE 480

Query: 481  NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS 540
            NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS
Sbjct: 481  NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS 540

Query: 541  RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS 600
            RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS
Sbjct: 541  RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS 600

Query: 601  QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE 660
            QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE
Sbjct: 601  QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE 660

Query: 661  TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN 720
            TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN
Sbjct: 661  TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN 720

Query: 721  KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT 780
            KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT
Sbjct: 721  KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT 780

Query: 781  HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN 840
            HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN
Sbjct: 781  HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN 840

Query: 841  LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGAYGKVQTFKARLVAKGYTQVEGVDY 900
            LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGA GKVQTFKARLVAKGYTQVEGVDY
Sbjct: 841  LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDY 900

Query: 901  EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ 960
            EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ
Sbjct: 901  EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ 960

Query: 961  KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI 1020
            KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI
Sbjct: 961  KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI 1020

Query: 1021 LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK 1080
            LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK
Sbjct: 1021 LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK 1080

Query: 1081 YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLCPRPDICYA 1140
            YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLC RPDICYA
Sbjct: 1081 YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYA 1140

Query: 1141 VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS 1200
            VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS
Sbjct: 1141 VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS 1200

Query: 1201 TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK 1260
            TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK
Sbjct: 1201 TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK 1260

Query: 1261 PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK 1320
            PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK
Sbjct: 1261 PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK 1320

Query: 1321 PLTAKVFEGHLESLGLRDMPHLT 1344
            PLTAKVFEGHLESLGLRDMPHLT
Sbjct: 1321 PLTAKVFEGHLESLGLRDMPHLT 1342

[Close]

BLAST of Cmc11g0301991 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 2637.8 bits (6836), Expect = 0.0e+00
Identity = 1322/1325 (99.77%), Postives = 1322/1325 (99.77%), Query Frame = 0


Query: 1    MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
            MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE
Sbjct: 1    MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61   RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
            RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA
Sbjct: 61   RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121  RMNEGASVREHVLNMMVHFNVAEMNGVVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180
            RMNEGASVREHVLNMMVHFNVAEMNG VIDEASQVSFILESLPESFLQFRSNAVMNKIAY
Sbjct: 121  RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181  TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240
            TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG
Sbjct: 181  TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 241  QGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300
            QGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL
Sbjct: 241  QGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300

Query: 301  VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK 360
            VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK
Sbjct: 301  VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK 360

Query: 361  SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR 420
            SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR
Sbjct: 361  SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR 420

Query: 421  SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE 480
            SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE
Sbjct: 421  SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE 480

Query: 481  NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS 540
            NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS
Sbjct: 481  NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS 540

Query: 541  RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS 600
            RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS
Sbjct: 541  RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS 600

Query: 601  QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE 660
            QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE
Sbjct: 601  QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE 660

Query: 661  TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN 720
            TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN
Sbjct: 661  TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN 720

Query: 721  KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT 780
            KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT
Sbjct: 721  KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT 780

Query: 781  HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN 840
            HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN
Sbjct: 781  HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN 840

Query: 841  LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGAYGKVQTFKARLVAKGYTQVEGVDY 900
            LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGA GKVQTFKARLVAKGYTQVEGVDY
Sbjct: 841  LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDY 900

Query: 901  EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ 960
            EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ
Sbjct: 901  EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ 960

Query: 961  KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI 1020
            KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI
Sbjct: 961  KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI 1020

Query: 1021 LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK 1080
            LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK
Sbjct: 1021 LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK 1080

Query: 1081 YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLCPRPDICYA 1140
            YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLC RPDICYA
Sbjct: 1081 YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYA 1140

Query: 1141 VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS 1200
            VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS
Sbjct: 1141 VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS 1200

Query: 1201 TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK 1260
            TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK
Sbjct: 1201 TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK 1260

Query: 1261 PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK 1320
            PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK
Sbjct: 1261 PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK 1320

Query: 1321 PLTAK 1326
            PLTAK
Sbjct: 1321 PLTAK 1325

[Close]

BLAST of Cmc11g0301991 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 2635.9 bits (6831), Expect = 0.0e+00
Identity = 1321/1325 (99.70%), Postives = 1321/1325 (99.70%), Query Frame = 0


Query: 1    MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
            MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE
Sbjct: 1    MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61   RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
            RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA
Sbjct: 61   RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121  RMNEGASVREHVLNMMVHFNVAEMNGVVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180
            RMNEGASVREHVLNMMVHFNVAEMNG VIDEASQVSFILESLPESFLQFRSNAVMNKIAY
Sbjct: 121  RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181  TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240
            TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG
Sbjct: 181  TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 241  QGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300
            QGNKANLAAAKTTKK KAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL
Sbjct: 241  QGNKANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300

Query: 301  VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK 360
            VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK
Sbjct: 301  VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK 360

Query: 361  SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR 420
            SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR
Sbjct: 361  SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR 420

Query: 421  SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE 480
            SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE
Sbjct: 421  SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE 480

Query: 481  NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS 540
            NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS
Sbjct: 481  NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS 540

Query: 541  RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS 600
            RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS
Sbjct: 541  RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS 600

Query: 601  QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE 660
            QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE
Sbjct: 601  QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE 660

Query: 661  TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN 720
            TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN
Sbjct: 661  TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN 720

Query: 721  KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT 780
            KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT
Sbjct: 721  KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT 780

Query: 781  HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN 840
            HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN
Sbjct: 781  HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN 840

Query: 841  LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGAYGKVQTFKARLVAKGYTQVEGVDY 900
            LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGA GKVQTFKARLVAKGYTQVEGVDY
Sbjct: 841  LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDY 900

Query: 901  EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ 960
            EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ
Sbjct: 901  EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ 960

Query: 961  KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI 1020
            KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI
Sbjct: 961  KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI 1020

Query: 1021 LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK 1080
            LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK
Sbjct: 1021 LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK 1080

Query: 1081 YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLCPRPDICYA 1140
            YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLC RPDICYA
Sbjct: 1081 YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYA 1140

Query: 1141 VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS 1200
            VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS
Sbjct: 1141 VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS 1200

Query: 1201 TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK 1260
            TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK
Sbjct: 1201 TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK 1260

Query: 1261 PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK 1320
            PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK
Sbjct: 1261 PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK 1320

Query: 1321 PLTAK 1326
            PLTAK
Sbjct: 1321 PLTAK 1325

[Close]

BLAST of Cmc11g0301991 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 760.8 bits (1963), Expect = 2.7e-218
Identity = 480/1379 (34.81%), Postives = 737/1379 (53.44%), Query Frame = 0


Query: 13   KLNGNN-YASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARA 72
            K NG+N +++W+  +  +LI   L  VL  +  +     A        E WA  +E+A +
Sbjct: 10   KFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKA--------EDWADLDERAAS 69

Query: 73   YILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREH 132
             I   LS+ +        TAR I   L+ ++   +   K    K +Y   M+EG +   H
Sbjct: 70   AIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSH 129

Query: 133  --VLNMMVHFNVAEMNGVVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNEL 192
              V N ++   +A + GV I+E  +   +L SLP S+    +  +  K    L  + + L
Sbjct: 130  LNVFNGLI-TQLANL-GVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSAL 189

Query: 193  QTFESLMKIKGQKGEANVATST-RKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLA 252
               E + K    +G+A +     R + R S +  +S              G +G      
Sbjct: 190  LLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRS--------------GARG------ 249

Query: 253  AAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYD-------------LLV 312
              K+  ++K+    C++CNQ GH+KR+CP     K +    K D             +L 
Sbjct: 250  --KSKNRSKSRVRNCYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLF 309

Query: 313  L---ETCL-VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 372
            +   E C+ +   +S W++D+ A++H          +   + G  T+++G         +
Sbjct: 310  INEEEECMHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFG--TVKMGNTSYSKIAGI 369

Query: 373  GGLRLCLQKSF---LLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEIC 432
            G   +C++ +    L+L++V  VPDL+ NLIS   L    Y   F   K  + K  + I 
Sbjct: 370  GD--ICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIA 429

Query: 433  SAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIER 492
                   LY   +   +  LN    + ++               LWH R+GH++   ++ 
Sbjct: 430  KGVARGTLYRTNAEICQGELNAAQDEISV--------------DLWHKRMGHMSEKGLQI 489

Query: 493  LVKNGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGG 552
            L K  L+S  +  ++  C+ CL GK  +  F     R    L+LV+SD+CGPM +++ GG
Sbjct: 490  LAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGG 549

Query: 553  FEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLK 612
             +YF+TF DD SR  +VY+++ K +  + F+++ A VE    + +K  RSD GGEY   +
Sbjct: 550  NKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSRE 609

Query: 613  FQNYLMECGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVY 672
            F+ Y    GI  + + PGTPQ NGV+ER NRT+++ VRSM+  A LP SFWG AVQTA Y
Sbjct: 610  FEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACY 669

Query: 673  ILNCVPSKSVS-ETPLKLWNGRKGSLRHFRIWGCP--AHVLENNPKKLEPRSKLCLFVGY 732
            ++N  PS  ++ E P ++W  ++ S  H +++GC   AHV +    KL+ +S  C+F+GY
Sbjct: 670  LINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGY 729

Query: 733  PKGTRGGYFYDPKDNKVFVSTNATFLEEDHIREHKPRSKIVLNEL--------------- 792
                 G   +DP   KV  S +  F  E  +R     S+ V N +               
Sbjct: 730  GDEEFGYRLWDPVKKKVIRSRDVVF-RESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPT 789

Query: 793  -SKETTEPSTRVVEEP-----------SALTRVVHVGSSTRTHQPQSLREPRRSGRVTNL 852
             ++ TT+  +   E+P             +  V H       HQP      RRS R    
Sbjct: 790  SAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEHPTQGEEQHQPL-----RRSERPRVE 849

Query: 853  PIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVDQP 912
              RY S TE + +  D    +P + K+ +   +K++ +KAM  E+ES+  N  + LV+ P
Sbjct: 850  SRRYPS-TEYVLISDD---REPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELP 909

Query: 913  DGVKPIGCKWIYKRKRGAYGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKSIRILLS 972
             G +P+ CKW++K K+    K+  +KARLV KG+ Q +G+D++E FSPV  + SIR +LS
Sbjct: 910  KGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILS 969

Query: 973  IAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRS 1032
            +AA  D E+ Q+DVKTAFL+G+LEE IYM+QPEGF + G++  +CKLN+S+YGLKQA R 
Sbjct: 970  LAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQ 1029

Query: 1033 WNIRFDTAIKSYGFDQIVDEPCVY-KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWL 1092
            W ++FD+ +KS  + +   +PCVY KR    +   L+LYVDD+L++G D GL+  +K  L
Sbjct: 1030 WYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDL 1089

Query: 1093 ATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGV 1152
            +  F MKDLG AQ +LG++I R+R ++ L LSQ  YI++++ +++M+N+K    P    +
Sbjct: 1090 SKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHL 1149

Query: 1153 TLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLCPRPDICYAVGIVSRYQSNPGLAHWT 1212
             LSK+ CP T ++   M  +PY+SAVGSLMYAM+C RPDI +AVG+VSR+  NPG  HW 
Sbjct: 1150 KLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWE 1209

Query: 1213 AVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRS 1272
            AVK IL+YLR T    L +G  D IL GYTD+D   D D+RKS++G +FT +GGA+ W+S
Sbjct: 1210 AVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQS 1269

Query: 1273 IKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSRE 1332
              Q C+A ST EAEY+AA E  KE +WL+ FL +L +     K   +YCD+  A+  S+ 
Sbjct: 1270 KLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGL---HQKEYVVYCDSQSAIDLSKN 1325

Query: 1333 PRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGL 1337
               H R KHI+ +YH IRE+V    + V +I++  N AD  TK +    FE   E +G+
Sbjct: 1330 SMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325

[Close]

BLAST of Cmc11g0301991 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 542.7 bits (1397), Expect = 1.1e-152
Identity = 423/1457 (29.03%), Postives = 688/1457 (47.22%), Query Frame = 0


Query: 15   NGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYIL 74
            +G  YA WK  I  +L   D+  V+    P            E  + W KA   A++ I+
Sbjct: 12   DGEKYAIWKFRIRALLAEQDVLKVVDGLMP-----------NEVDDSWKKAERCAKSTII 71

Query: 75   ASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVRE--HV 134
              LS+       S +TAR+I+++L  ++ + S   +    K + + +++   S+    H+
Sbjct: 72   EYLSDSFLNFATSDITARQILENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHI 131

Query: 135  LNMMVHFNVAEMNGVVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTF 194
             + ++   +A   G  I+E  ++S +L +LP  +      A+       LT    + +  
Sbjct: 132  FDELISELLAA--GAKIEEMDKISHLLITLPSCY-DGIITAIETLSEENLTLAFVKNRLL 191

Query: 195  ESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKT 254
            +  +KIK    + +        H  + +   ++     N+  K KK  +GN        +
Sbjct: 192  DQEIKIKNDHNDTSKKVMNAIVHNNNNTYKNNL---FKNRVTKPKKIFKGN--------S 251

Query: 255  TKKTKAAKGICFHCNQEGHWKRNCPKY---LAEKKKAKQGKYDL-----LVLETCLVEN- 314
              K K     C HC +EGH K++C  Y   L  K K  + +        +      V N 
Sbjct: 252  KYKVK-----CHHCGREGHIKKDCFHYKRILNNKNKENEKQVQTATSHGIAFMVKEVNNT 311

Query: 315  ---DDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK 374
               D+  +++DSGA++H+ +     +   ++           G  + A   G +RL    
Sbjct: 312  SVMDNCGFVLDSGASDHLINDESLYTDSVEVVPPLKIAVAKQGEFIYATKRGIVRL-RND 371

Query: 375  SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEIC-SAKLENNLYVL 434
              + LE+V    +   NL+SVK L E   S+ F+ + V I KNG+ +  ++ + NN+ V+
Sbjct: 372  HEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGMLNNVPVI 431

Query: 435  RSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELE 494
                               Q   +    K N  LWH R GHI+  ++  + +  + S+  
Sbjct: 432  N-----------------FQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQS 491

Query: 495  -----ENSLPVCESCLEGKMTKRPF---TGKGHRAKEPLELVHSDLCGPMNVKARGGFEY 554
                 E S  +CE CL GK  + PF     K H  K PL +VHSD+CGP+         Y
Sbjct: 492  LLNNLELSCEICEPCLNGKQARLPFKQLKDKTH-IKRPLFVVHSDVCGPITPVTLDDKNY 551

Query: 555  FITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQN 614
            F+ F D ++ Y   YL+++KS+    F+++ A+ E   +  +     D G EY+  + + 
Sbjct: 552  FVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQ 611

Query: 615  YLMECGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILN 674
            + ++ GI   L+ P TPQ NGVSER  RT+ +  R+M+S A L  SFWG AV TA Y++N
Sbjct: 612  FCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLIN 671

Query: 675  CVPSKSV---SETPLKLWNGRKGSLRHFRIWGCPAHV-LENNPKKLEPRSKLCLFVGY-P 734
             +PS+++   S+TP ++W+ +K  L+H R++G   +V ++N   K + +S   +FVGY P
Sbjct: 672  RIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKNKQGKFDDKSFKSIFVGYEP 731

Query: 735  KG--------------------------TRGGYFYD--------------PKDNKVFVST 794
             G                          +R   F                P D++  + T
Sbjct: 732  NGFKLWDAVNEKFIVARDVVVDETNMVNSRAVKFETVFLKDSKESENKNFPNDSRKIIQT 791

Query: 795  ----------NATFLEEDHIREHK----PRSKIVLNELS------------KETTEPSTR 854
                      N  FL++    E+K       KI+  E              K++ E +  
Sbjct: 792  EFPNESKECDNIQFLKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESNKY 851

Query: 855  VVEEPSALTRVVHVGSSTRTHQPQSLREP------------------------RRSGRVT 914
             + E     R  H+  S  +  P   RE                         RRS R+ 
Sbjct: 852  FLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRRSERLK 911

Query: 915  NLP-IRYMSLTETL--TVISDGDI--EDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSV 974
              P I Y     +L   V++   I  + P +F +     DK  W +A+N EL +   N+ 
Sbjct: 912  TKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKINNT 971

Query: 975  WDLVDQPDGVKPIGCKWIYKRKRGAYGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLK 1034
            W +  +P+    +  +W++  K    G    +KARLVA+G+TQ   +DYEETF+PVA + 
Sbjct: 972  WTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARIS 1031

Query: 1035 SIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYG 1094
            S R +LS+   ++ ++ QMDVKTAFLNG L+E IYM+ P+G  I      +CKLN++IYG
Sbjct: 1032 SFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG--ISCNSDNVCKLNKAIYG 1091

Query: 1095 LKQASRSWNIRFDTAIKSYGFDQIVDEPCVY---KRIINKSVAFLVLYVDDILLIGNDIG 1154
            LKQA+R W   F+ A+K   F     + C+Y   K  IN+++ +++LYVDD+++   D+ 
Sbjct: 1092 LKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENI-YVLLYVDDVVIATGDMT 1151

Query: 1155 LLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKR 1214
             + + K++L  +F+M DL E +  +GI+I  + +   + LSQ++Y+ KI+ K++M+N   
Sbjct: 1152 RMNNFKRYLMEKFRMTDLNEIKHFIGIRI--EMQEDKIYLSQSAYVKKILSKFNMENCNA 1211

Query: 1215 GLLP----FRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLCPRPDICYAVGIV 1274
               P      + +  S E C           + P  S +G LMY MLC RPD+  AV I+
Sbjct: 1212 VSTPLPSKINYELLNSDEDC-----------NTPCRSLIGCLMYIMLCTRPDLTTAVNIL 1271

Query: 1275 SRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLI----LTGYTDSDFQTDRDSRKS 1334
            SRY S      W  +K +L+YL+ T D  L++  K+L     + GY DSD+      RKS
Sbjct: 1272 SRYSSKNNSELWQNLKRVLRYLKGTIDMKLIF-KKNLAFENKIIGYVDSDWAGSEIDRKS 1331

Query: 1335 TSGSVFTL-NGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMS 1337
            T+G +F + +   + W + +Q  +A S+ EAEY+A  EA +EA+WL+  L  + +   + 
Sbjct: 1332 TTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINI--KLE 1391

[Close]

BLAST of Cmc11g0301991 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 3.1e-134
Identity = 398/1492 (26.68%), Postives = 647/1492 (43.36%), Query Frame = 0


Query: 6    LNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPA---ANATRTVREPYERW 65
            +NM    KL   NY  W   ++ +    +L   L       PA    +A   V   Y RW
Sbjct: 18   VNMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRW 77

Query: 66   AKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY----QIKHDALKYIY 125
             + ++   + +L ++S  +        TA +I ++L++++   SY    Q++    ++  
Sbjct: 78   KRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTK 137

Query: 126  NARMNEGASVREHVLNMMVHFNVAEMNGVVIDEASQVSFILESLPESFLQFRSNAVMNKI 185
              +     ++ +++  ++  F+   + G  +D   QV  +LE+LPE +            
Sbjct: 138  GTK-----TIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDT 197

Query: 186  AYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKK 245
              TLT +   L   ES  KI        +  +       +T+ T +  + + N ++  + 
Sbjct: 198  PPTLTEIHERLLNHES--KILAVSSATVIPITANAVSHRNTTTTNNNNNGNRNNRYDNRN 257

Query: 246  GGQGNK----ANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCP--KYLAEKKKAKQGKYD 305
                +K    ++        ++K   G C  C  +GH  + C   ++      ++Q    
Sbjct: 258  NNNNSKPWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQQPPSP 317

Query: 306  L--------LVLETCLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGH 365
                     L L +    N+   W++DSGAT+H+ S F  + S  Q  TG   + V  G 
Sbjct: 318  FTPWQPRANLALGSPYSSNN---WLLDSGATHHITSDFNNL-SLHQPYTGGDDVMVADGS 377

Query: 366  VVSAIAVGGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLE------QSYSLTFNVNKV 425
             +     G   L  +   L L N+  VP++ +NLISV  L        + +  +F V  +
Sbjct: 378  TIPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDL 437

Query: 426  FIYKNGVEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENA--HLWHL 485
                 GV +   K ++ LY               +  A +Q   L  SP   A    WH 
Sbjct: 438  ---NTGVPLLQGKTKDELY--------------EWPIASSQPVSLFASPSSKATHSSWHA 497

Query: 486  RLGHINLNRIERLVKNGLLSELE-ENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHS 545
            RLGH   + +  ++ N  LS L   +    C  CL  K  K PF+     +  PLE ++S
Sbjct: 498  RLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYS 557

Query: 546  DLCGPMNVKARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKT 605
            D+     + +   + Y++ F D ++RY ++Y ++ KS+  E F  +K  +EN     I T
Sbjct: 558  DVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGT 617

Query: 606  FRSDRGGEYMDLKFQNYLMECGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLP 665
            F SD GGE++ L    Y  + GI    S P TP+ NG+SER++R +++   +++S+A +P
Sbjct: 618  FYSDNGGEFVAL--WEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIP 677

Query: 666  NSFWGYAVQTAVYILNCVPSKSVS-ETPLKLWNGRKGSLRHFRIWGCPAH--VLENNPKK 725
             ++W YA   AVY++N +P+  +  E+P +   G   +    R++GC  +  +   N  K
Sbjct: 678  KTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHK 737

Query: 726  LEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVSTNATFLEE-----------DHIREHKP 785
            L+ +S+ C+F+GY            + +++++S +  F E              ++E + 
Sbjct: 738  LDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDENCFPFSNYLATLSPVQEQRR 797

Query: 786  RSKIVLNELSKETTEPSTRVV----------------EEPSALTRVVHVGSS-------- 845
             S  V    S  TT P+   V                  PSA  R   V SS        
Sbjct: 798  ESSCV---WSPHTTLPTRTPVLPAPSCSDPHHAATPPSSPSAPFRNSQVSSSNLDSSFSS 857

Query: 846  --------------------------TRTHQ-----------------PQSLREPRRSGR 905
                                      T+TH                   QSL  P +S  
Sbjct: 858  SFPSSPEPTAPRQNGPQPTTQPTQTQTQTHSSQNTSQNNPTNESPSQLAQSLSTPAQSSS 917

Query: 906  VTNLPIRYMSLTET--------------LTVISDGDIEDPLTF----------------- 965
             +  P    S + T              L  I + + + PL                   
Sbjct: 918  SSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNNQAPLNTHSMGTRAKAGIIKPNPK 977

Query: 966  -------------KKAMEDVDKDEWIKAMNLELESMYFNSVWDLVDQPDG-VKPIGCKWI 1025
                         + A++ +  + W  AM  E+ +   N  WDLV  P   V  +GC+WI
Sbjct: 978  YSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWI 1037

Query: 1026 YKRKRGAYGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKSIRILLSIAAYFDYEIWQ 1085
            + +K  + G +  +KARLVAKGY Q  G+DY ETFSPV    SIRI+L +A    + I Q
Sbjct: 1038 FTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQ 1097

Query: 1086 MDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKS 1145
            +DV  AFL G L + +YM QP GFI   +   +CKL +++YGLKQA R+W +     + +
Sbjct: 1098 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLT 1157

Query: 1146 YGFDQIVDEPCVYKRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEA 1205
             GF   V +  ++     KS+ ++++YVDDIL+ GND  LL +    L+ +F +KD  E 
Sbjct: 1158 IGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEEL 1217

Query: 1206 QFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQCPKTPQ 1265
             + LGI+    R    L LSQ  YI  ++ + +M  +K    P      LS     K   
Sbjct: 1218 HYFLGIE--AKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTD 1277

Query: 1266 DVEEMRHIPYASAVGSLMYAMLCPRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRT 1325
              E      Y   VGSL Y +   RPDI YAV  +S++   P   H  A+K IL+YL  T
Sbjct: 1278 PTE------YRGIVGSLQY-LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGT 1337

Query: 1326 RDYTL-VYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTM 1341
             ++ + +     L L  Y+D+D+  D+D   ST+G +  L    + W S KQ  +  S+ 
Sbjct: 1338 PNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSST 1397

[Close]

BLAST of Cmc11g0301991 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 475.3 bits (1222), Expect = 2.2e-132
Identity = 393/1490 (26.38%), Postives = 636/1490 (42.68%), Query Frame = 0


Query: 6    LNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPA---ANATRTVREPYERW 65
            +NM    KL   NY  W   ++ +    +L   L    P  PA    +A   V   Y RW
Sbjct: 18   VNMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGTDAVPRVNPDYTRW 77

Query: 66   AKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARM 125
             + ++   + IL ++S  +        TA +I ++L++++   SY               
Sbjct: 78   RRQDKLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSY--------------- 137

Query: 126  NEGASVREHV--LNMMVHFNVAEMNGVVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 185
                    HV  L  +  F+   + G  +D   QV  +LE+LP+ +              
Sbjct: 138  -------GHVTQLRFITRFDQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPP 197

Query: 186  TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 245
            +LT +   L   ES +          +  +       +T+  ++    + N      +  
Sbjct: 198  SLTEIHERLINRESKLLALNSAEVVPITANVVTHRNTNTNRNQNNRGDNRNYNNNNNRSN 257

Query: 246  QGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAK-----------QG 305
                ++  +    ++ K   G C  C+ +GH  + CP+    +               Q 
Sbjct: 258  SWQPSSSGSRSDNRQPKPYLGRCQICSVQGHSAKRCPQLHQFQSTTNQQQSTSPFTPWQP 317

Query: 306  KYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAI 365
            + +L V       N    W++DSGAT+H+ S F  + S+ Q  TG   + +  G  +   
Sbjct: 318  RANLAVNSPYNANN----WLLDSGATHHITSDFNNL-SFHQPYTGGDDVMIADGSTIPIT 377

Query: 366  AVGGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLE------QSYSLTFNVNKVFIYKN 425
              G   L      L L  V  VP++ +NLISV  L        + +  +F V  +     
Sbjct: 378  HTGSASLPTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDL---NT 437

Query: 426  GVEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINL 485
            GV +   K ++ LY     +S+A+    MF +  +         K     WH RLGH +L
Sbjct: 438  GVPLLQGKTKDELYEWPIASSQAV---SMFASPCS---------KATHSSWHSRLGHPSL 497

Query: 486  NRIERLVKNGLLSELE-ENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMN 545
              +  ++ N  L  L   + L  C  C   K  K PF+     + +PLE ++SD+     
Sbjct: 498  AILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-SP 557

Query: 546  VKARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGG 605
            + +   + Y++ F D ++RY ++Y ++ KS+  + F  +K+ VEN     I T  SD GG
Sbjct: 558  ILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGG 617

Query: 606  EYMDLKFQNYLMECGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYA 665
            E++ L+  +YL + GI    S P TP+ NG+SER++R +++M  +++S+A +P ++W YA
Sbjct: 618  EFVVLR--DYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYA 677

Query: 666  VQTAVYILNCVPSKSVS-ETPLKLWNGRKGSLRHFRIWGCPAH--VLENNPKKLEPRSKL 725
               AVY++N +P+  +  ++P +   G+  +    +++GC  +  +   N  KLE +SK 
Sbjct: 678  FSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQ 737

Query: 726  CLFVGYPKGTRGGYFYDPKDNKVFVSTNATFLEE---------DHIREHKPRSKIVLNEL 785
            C F+GY               +++ S +  F E                + RS    N  
Sbjct: 738  CAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFSTTNFGVSTSQEQRSDSAPNWP 797

Query: 786  SKETTEPSTRVV------------------EEPSAL-----------------------T 845
            S  TT P+T +V                    PS L                       T
Sbjct: 798  S-HTTLPTTPLVLPAPPCLGPHLDTSPRPPSSPSPLCTTQVSSSNLPSSSISSPSSSEPT 857

Query: 846  RVVHVG--SSTRTHQPQ-----------------SLREPRRSGRVTNLPIRYMSLTETLT 905
               H G   + + HQ Q                 S   P ++  +   PI    +    T
Sbjct: 858  APSHNGPQPTAQPHQTQNSNSNSPILNNPNPNSPSPNSPNQNSPLPQSPISSPHIPTPST 917

Query: 906  VISDGDI----------------------------------------------------- 965
             IS+ +                                                      
Sbjct: 918  SISEPNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAKDGIRKPNQKYSYAT 977

Query: 966  -----EDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLV-DQPDGVKPIGCKWIYK 1025
                  +P T  +AM+D   D W +AM  E+ +   N  WDLV   P  V  +GC+WI+ 
Sbjct: 978  SLAANSEPRTAIQAMKD---DRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFT 1037

Query: 1026 RKRGAYGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKSIRILLSIAAYFDYEIWQMD 1085
            +K  + G +  +KARLVAKGY Q  G+DY ETFSPV    SIRI+L +A    + I Q+D
Sbjct: 1038 KKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLD 1097

Query: 1086 VKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYG 1145
            V  AFL G L + +YM QP GF+   +   +C+L ++IYGLKQA R+W +   T + + G
Sbjct: 1098 VNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVG 1157

Query: 1146 FDQIVDEPCVYKRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQF 1205
            F   + +  ++     +S+ ++++YVDDIL+ GND  LL      L+ +F +K+  +  +
Sbjct: 1158 FVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHY 1217

Query: 1206 VLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQCPKTPQDV 1265
             LGI+    R  + L LSQ  Y   ++ + +M  +K    P      L+     K P   
Sbjct: 1218 FLGIE--AKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPT 1277

Query: 1266 EEMRHIPYASAVGSLMYAMLCPRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRD 1325
            E      Y   VGSL Y +   RPD+ YAV  +S+Y   P   HW A+K +L+YL  T D
Sbjct: 1278 E------YRGIVGSLQY-LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPD 1337

Query: 1326 YTL-VYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEA 1341
            + + +     L L  Y+D+D+  D D   ST+G +  L    + W S KQ  +  S+ EA
Sbjct: 1338 HGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEA 1397

[Close]

BLAST of Cmc11g0301991 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.6e-35
Identity = 305/1509 (20.21%), Postives = 541/1509 (35.85%), Query Frame = 0


Query: 145  NGVVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGE 204
            N + + +      IL+ L   F   R N    K    L+ L  E+Q      KI      
Sbjct: 296  NNINVSDRLACQLILKGLSGDFKYLR-NQYRTKTNMKLSQLFAEIQLIYDENKIMNLN-- 355

Query: 205  ANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKTKAAKGICF 264
                 S  K H    + +++ P+++  K   +      ++ N +  +  K    A    F
Sbjct: 356  ---KPSQYKQHSEYKNVSRTSPNTTNTKVTTRNY----HRTNSSKPRAAKAHNIATSSKF 415

Query: 265  HCNQEGHWKRN--CPKYLAEKKKAKQGKYDLLVLETCLVENDDSA---WIIDSGATNHVC 324
                  H   +    +YL++  +   G+       T  ++++D      +IDSGA+  + 
Sbjct: 416  SRVNNDHINESTVSSQYLSDDNELSLGQQQKESKPTHTIDSNDELPDHLLIDSGASQTLV 475

Query: 325  SSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQKSFLLLENVYVVPDLKRNLI 384
             S   +         E+ +       +   A+G L    Q            P++  +L+
Sbjct: 476  RSAHYLH--HATPNSEINIVDAQKQDIPINAIGNLHFNFQNGTKTSIKALHTPNIAYDLL 535

Query: 385  SVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQ 444
            S+  L  Q+ +  F  N      +G  +       + Y    L+ K L+ + + K  I  
Sbjct: 536  SLSELANQNITACFTRN-TLERSDGTVLAPIVKHGDFY---WLSKKYLIPSHISKLTINN 595

Query: 445  NKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEENSLP-------VCESCLEG 504
              + K   K    L H  LGH N   I++ +K   ++ L+E+ +         C  CL G
Sbjct: 596  VNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIG 655

Query: 505  KMTKRPFTGKGHRAK-----EPLELVHSDLCGPMNVKARGGFEYFITFTDDYSRYGYVYL 564
            K TK     KG R K     EP + +H+D+ GP++   +    YFI+FTD+ +R+ +VY 
Sbjct: 656  KSTKHRHV-KGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYP 715

Query: 565  MQHKSE--ALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVSQLSAP 624
            +  + E   L  F    A ++N  +  +   + DRG EY +     +    GI +  +  
Sbjct: 716  LHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTT 775

Query: 625  GTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSETPLKL 684
               + +GV+ER NRTLL+  R+++  + LPN  W  AV+ +  I N + S   ++   + 
Sbjct: 776  ADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPK-NDKSARQ 835

Query: 685  WNGRKG-SLRHFRIWGCPAHVLENNP-KKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF 744
              G  G  +     +G P  V  +NP  K+ PR      +   + + G   Y P   K  
Sbjct: 836  HAGLAGLDITTILPFGQPVIVNNHNPDSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTV 895

Query: 745  VSTNATFLEEDHIR---------------------------------------------- 804
             +TN   L+++  +                                              
Sbjct: 896  DTTNYVILQDNQSKLDQFNYDTLTFDDDLNRLTAHNQSFIEQNETEQSYDQNTESDHDYQ 955

Query: 805  ------------------------EHKPRSKI--------------------------VL 864
                                    +H+P  K+                          ++
Sbjct: 956  SEIEINSDPLVNDFSSQSMNPLQLDHEPVQKVRALKEVDADISEYNILPSPVRSRTPHII 1015

Query: 865  NELSKE--------TTEP------STRVVEEPSALTRVVHVGSSTR-THQPQSLREPRRS 924
            N+ S E        TT P      + R  + P +   ++ + S  R  ++ ++++  R  
Sbjct: 1016 NKESTEMGGTIESDTTSPRHSSTFTARNQKRPGSPNDMIDLTSQDRVNYELENIKTTRLG 1075

Query: 925  G----------------RVTN--------------------------------------- 984
            G                R TN                                       
Sbjct: 1076 GTEEPYIQRNSDTNIKYRTTNSTPSIDDRSPDSDSTTPIISIETKAACDNTPSIDTDPPE 1135

Query: 985  ----------------------------LPIRYM---SLTETLTVISD------------ 1044
                                        LP+  +   S T+T  V  D            
Sbjct: 1136 YRSSDHATPNIMPDKSSKNVTADSILDDLPLPDLTNKSPTDTSDVSKDIPHIHSRQTNSS 1195

Query: 1045 -GDIEDPLTF------KKAMED-------------------------------------- 1104
             G ++D          K+++ED                                      
Sbjct: 1196 LGGMDDSNVLTTTKSKKRSLEDNETEIEVSRDTWNNKNMRSLEPPRSKKRINLIAAIKGV 1255

Query: 1105 ----------------------VDKDEWIKAMNLELESMYFNSVWDL-----VDQPDGVK 1164
                                   +KD +I+A + E+  +   + WD       +  D  K
Sbjct: 1256 KSIKPVRTTLRYDEAITYNEDNKEKDRYIEAYHKEINQLLRMNTWDTNKYYDRNDIDPKK 1315

Query: 1165 PIGCKWIYKRKRGAYGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKSIRILLSIAAY 1224
             I   +I+ +KR       T KAR VA+G  Q       +  S      ++   LSIA  
Sbjct: 1316 VINSMFIFNKKRDG-----THKARFVARGDIQHPDTYDSDMQSNTVHHYALMTSLSIALD 1375

Query: 1225 FDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIR 1284
             DY I Q+D+ +A+L  +++E +Y++ P      G   K+ +L +S+YGLKQ+  +W   
Sbjct: 1376 NDYYITQLDISSAYLYADIKEELYIRPPPHL---GLNDKLLRLRKSLYGLKQSGANW--- 1435

Query: 1285 FDTAIKSY-----GFDQIVDEPCVYKRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWL 1329
            ++T IKSY        ++    CV+K     S   + L+VDD++L   D+     I   L
Sbjct: 1436 YET-IKSYLINCCDMQEVRGWSCVFK----NSQVTICLFVDDMILFSKDLNANEKIITTL 1495

[Close]

BLAST of Cmc11g0301991 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 2676.0 bits (6935), Expect = 0.0e+00
Identity = 1340/1343 (99.78%), Postives = 1340/1343 (99.78%), Query Frame = 0


Query: 1    MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
            MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE
Sbjct: 1    MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61   RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
            RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA
Sbjct: 61   RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121  RMNEGASVREHVLNMMVHFNVAEMNGVVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180
            RMNEGASVREHVLNMMVHFNVAEMNG VIDEASQVSFILESLPESFLQFRSNAVMNKIAY
Sbjct: 121  RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181  TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240
            TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG
Sbjct: 181  TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 241  QGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300
            QGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL
Sbjct: 241  QGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300

Query: 301  VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK 360
            VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK
Sbjct: 301  VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK 360

Query: 361  SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR 420
            SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR
Sbjct: 361  SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR 420

Query: 421  SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE 480
            SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE
Sbjct: 421  SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE 480

Query: 481  NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS 540
            NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS
Sbjct: 481  NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS 540

Query: 541  RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS 600
            RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS
Sbjct: 541  RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS 600

Query: 601  QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE 660
            QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE
Sbjct: 601  QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE 660

Query: 661  TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN 720
            TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN
Sbjct: 661  TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN 720

Query: 721  KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT 780
            KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT
Sbjct: 721  KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT 780

Query: 781  HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN 840
            HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN
Sbjct: 781  HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN 840

Query: 841  LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGAYGKVQTFKARLVAKGYTQVEGVDY 900
            LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGA GKVQTFKARLVAKGYTQVEGVDY
Sbjct: 841  LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDY 900

Query: 901  EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ 960
            EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ
Sbjct: 901  EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ 960

Query: 961  KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI 1020
            KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI
Sbjct: 961  KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI 1020

Query: 1021 LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK 1080
            LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK
Sbjct: 1021 LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK 1080

Query: 1081 YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLCPRPDICYA 1140
            YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLC RPDICYA
Sbjct: 1081 YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYA 1140

Query: 1141 VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS 1200
            VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS
Sbjct: 1141 VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS 1200

Query: 1201 TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK 1260
            TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK
Sbjct: 1201 TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK 1260

Query: 1261 PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK 1320
            PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK
Sbjct: 1261 PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK 1320

Query: 1321 PLTAKVFEGHLESLGLRDMPHLT 1344
            PLTAKVFEGHLESLGLRDMPHLT
Sbjct: 1321 PLTAKVFEGHLESLGLRDMPHLT 1343

[Close]

BLAST of Cmc11g0301991 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 2674.0 bits (6930), Expect = 0.0e+00
Identity = 1339/1343 (99.70%), Postives = 1339/1343 (99.70%), Query Frame = 0


Query: 1    MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
            MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE
Sbjct: 1    MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61   RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
            RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA
Sbjct: 61   RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121  RMNEGASVREHVLNMMVHFNVAEMNGVVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180
            RMNEGASVREHVLNMMVHFNVAEMNG VIDEASQVSFILESLPESFLQFRSNAVMNKIAY
Sbjct: 121  RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181  TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240
            TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG
Sbjct: 181  TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 241  QGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300
            QGNKANLAAAKTTKK KAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL
Sbjct: 241  QGNKANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300

Query: 301  VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK 360
            VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK
Sbjct: 301  VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK 360

Query: 361  SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR 420
            SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR
Sbjct: 361  SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR 420

Query: 421  SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE 480
            SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE
Sbjct: 421  SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE 480

Query: 481  NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS 540
            NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS
Sbjct: 481  NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS 540

Query: 541  RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS 600
            RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS
Sbjct: 541  RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS 600

Query: 601  QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE 660
            QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE
Sbjct: 601  QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE 660

Query: 661  TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN 720
            TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN
Sbjct: 661  TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN 720

Query: 721  KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT 780
            KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT
Sbjct: 721  KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT 780

Query: 781  HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN 840
            HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN
Sbjct: 781  HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN 840

Query: 841  LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGAYGKVQTFKARLVAKGYTQVEGVDY 900
            LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGA GKVQTFKARLVAKGYTQVEGVDY
Sbjct: 841  LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDY 900

Query: 901  EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ 960
            EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ
Sbjct: 901  EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ 960

Query: 961  KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI 1020
            KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI
Sbjct: 961  KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI 1020

Query: 1021 LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK 1080
            LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK
Sbjct: 1021 LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK 1080

Query: 1081 YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLCPRPDICYA 1140
            YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLC RPDICYA
Sbjct: 1081 YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYA 1140

Query: 1141 VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS 1200
            VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS
Sbjct: 1141 VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS 1200

Query: 1201 TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK 1260
            TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK
Sbjct: 1201 TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK 1260

Query: 1261 PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK 1320
            PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK
Sbjct: 1261 PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK 1320

Query: 1321 PLTAKVFEGHLESLGLRDMPHLT 1344
            PLTAKVFEGHLESLGLRDMPHLT
Sbjct: 1321 PLTAKVFEGHLESLGLRDMPHLT 1343

[Close]

BLAST of Cmc11g0301991 vs. ExPASy TrEMBL
Match: A0A5A7TZD7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001300 PE=4 SV=1)

HSP 1 Score: 2668.3 bits (6915), Expect = 0.0e+00
Identity = 1338/1343 (99.63%), Postives = 1338/1343 (99.63%), Query Frame = 0


Query: 1    MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
            MTSATLNMLAADKLNGNNYASWKNT NTVLIIDDLRFVLVEECPQVPAANATRTVREPYE
Sbjct: 1    MTSATLNMLAADKLNGNNYASWKNT-NTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61   RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
            RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA
Sbjct: 61   RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121  RMNEGASVREHVLNMMVHFNVAEMNGVVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180
            RMNEGASVREHVLNMMVHFNVAEMNG VIDEASQVSFILESLPESFLQFRSNAVMNKIAY
Sbjct: 121  RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181  TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240
            TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG
Sbjct: 181  TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 241  QGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300
            QGNKANLAAAKTTKK KAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL
Sbjct: 241  QGNKANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300

Query: 301  VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK 360
            VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK
Sbjct: 301  VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK 360

Query: 361  SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR 420
            SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR
Sbjct: 361  SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR 420

Query: 421  SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE 480
            SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE
Sbjct: 421  SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE 480

Query: 481  NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS 540
            NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS
Sbjct: 481  NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS 540

Query: 541  RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS 600
            RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS
Sbjct: 541  RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS 600

Query: 601  QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE 660
            QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE
Sbjct: 601  QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE 660

Query: 661  TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN 720
            TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN
Sbjct: 661  TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN 720

Query: 721  KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT 780
            KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT
Sbjct: 721  KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT 780

Query: 781  HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN 840
            HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN
Sbjct: 781  HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN 840

Query: 841  LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGAYGKVQTFKARLVAKGYTQVEGVDY 900
            LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGA GKVQTFKARLVAKGYTQVEGVDY
Sbjct: 841  LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDY 900

Query: 901  EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ 960
            EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ
Sbjct: 901  EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ 960

Query: 961  KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI 1020
            KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI
Sbjct: 961  KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI 1020

Query: 1021 LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK 1080
            LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK
Sbjct: 1021 LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK 1080

Query: 1081 YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLCPRPDICYA 1140
            YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLC RPDICYA
Sbjct: 1081 YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYA 1140

Query: 1141 VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS 1200
            VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS
Sbjct: 1141 VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS 1200

Query: 1201 TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK 1260
            TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK
Sbjct: 1201 TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK 1260

Query: 1261 PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK 1320
            PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK
Sbjct: 1261 PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK 1320

Query: 1321 PLTAKVFEGHLESLGLRDMPHLT 1344
            PLTAKVFEGHLESLGLRDMPHLT
Sbjct: 1321 PLTAKVFEGHLESLGLRDMPHLT 1342

[Close]

BLAST of Cmc11g0301991 vs. ExPASy TrEMBL
Match: A0A5D3CSZ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00320 PE=4 SV=1)

HSP 1 Score: 2637.8 bits (6836), Expect = 0.0e+00
Identity = 1322/1325 (99.77%), Postives = 1322/1325 (99.77%), Query Frame = 0


Query: 1    MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
            MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE
Sbjct: 1    MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61   RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
            RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA
Sbjct: 61   RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121  RMNEGASVREHVLNMMVHFNVAEMNGVVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180
            RMNEGASVREHVLNMMVHFNVAEMNG VIDEASQVSFILESLPESFLQFRSNAVMNKIAY
Sbjct: 121  RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181  TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240
            TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG
Sbjct: 181  TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 241  QGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300
            QGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL
Sbjct: 241  QGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300

Query: 301  VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK 360
            VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK
Sbjct: 301  VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK 360

Query: 361  SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR 420
            SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR
Sbjct: 361  SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR 420

Query: 421  SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE 480
            SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE
Sbjct: 421  SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE 480

Query: 481  NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS 540
            NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS
Sbjct: 481  NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS 540

Query: 541  RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS 600
            RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS
Sbjct: 541  RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS 600

Query: 601  QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE 660
            QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE
Sbjct: 601  QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE 660

Query: 661  TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN 720
            TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN
Sbjct: 661  TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN 720

Query: 721  KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT 780
            KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT
Sbjct: 721  KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT 780

Query: 781  HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN 840
            HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN
Sbjct: 781  HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN 840

Query: 841  LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGAYGKVQTFKARLVAKGYTQVEGVDY 900
            LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGA GKVQTFKARLVAKGYTQVEGVDY
Sbjct: 841  LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDY 900

Query: 901  EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ 960
            EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ
Sbjct: 901  EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ 960

Query: 961  KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI 1020
            KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI
Sbjct: 961  KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI 1020

Query: 1021 LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK 1080
            LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK
Sbjct: 1021 LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK 1080

Query: 1081 YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLCPRPDICYA 1140
            YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLC RPDICYA
Sbjct: 1081 YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYA 1140

Query: 1141 VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS 1200
            VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS
Sbjct: 1141 VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS 1200

Query: 1201 TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK 1260
            TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK
Sbjct: 1201 TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK 1260

Query: 1261 PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK 1320
            PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK
Sbjct: 1261 PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK 1320

Query: 1321 PLTAK 1326
            PLTAK
Sbjct: 1321 PLTAK 1325

[Close]

BLAST of Cmc11g0301991 vs. ExPASy TrEMBL
Match: A0A5A7UGV2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G002690 PE=4 SV=1)

HSP 1 Score: 2635.9 bits (6831), Expect = 0.0e+00
Identity = 1321/1325 (99.70%), Postives = 1321/1325 (99.70%), Query Frame = 0


Query: 1    MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
            MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE
Sbjct: 1    MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61   RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
            RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA
Sbjct: 61   RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121  RMNEGASVREHVLNMMVHFNVAEMNGVVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180
            RMNEGASVREHVLNMMVHFNVAEMNG VIDEASQVSFILESLPESFLQFRSNAVMNKIAY
Sbjct: 121  RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181  TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240
            TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG
Sbjct: 181  TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

Query: 241  QGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300
            QGNKANLAAAKTTKK KAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL
Sbjct: 241  QGNKANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCL 300

Query: 301  VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK 360
            VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK
Sbjct: 301  VENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAVGGLRLCLQK 360

Query: 361  SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR 420
            SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR
Sbjct: 361  SFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAKLENNLYVLR 420

Query: 421  SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE 480
            SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE
Sbjct: 421  SLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEE 480

Query: 481  NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS 540
            NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS
Sbjct: 481  NSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEYFITFTDDYS 540

Query: 541  RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS 600
            RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS
Sbjct: 541  RYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQNYLMECGIVS 600

Query: 601  QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE 660
            QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE
Sbjct: 601  QLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVSE 660

Query: 661  TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN 720
            TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN
Sbjct: 661  TPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDN 720

Query: 721  KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT 780
            KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT
Sbjct: 721  KVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTRT 780

Query: 781  HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN 840
            HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN
Sbjct: 781  HQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMN 840

Query: 841  LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGAYGKVQTFKARLVAKGYTQVEGVDY 900
            LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGA GKVQTFKARLVAKGYTQVEGVDY
Sbjct: 841  LELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDY 900

Query: 901  EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ 960
            EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ
Sbjct: 901  EETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQ 960

Query: 961  KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI 1020
            KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI
Sbjct: 961  KICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDI 1020

Query: 1021 LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK 1080
            LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK
Sbjct: 1021 LLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVK 1080

Query: 1081 YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLCPRPDICYA 1140
            YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLC RPDICYA
Sbjct: 1081 YSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYA 1140

Query: 1141 VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS 1200
            VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS
Sbjct: 1141 VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKS 1200

Query: 1201 TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK 1260
            TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK
Sbjct: 1201 TSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSK 1260

Query: 1261 PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK 1320
            PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK
Sbjct: 1261 PITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTK 1320

Query: 1321 PLTAK 1326
            PLTAK
Sbjct: 1321 PLTAK 1325

[Close]

BLAST of Cmc11g0301991 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 300.4 bits (768), Expect = 7.0e-81
Identity = 170/484 (35.12%), Postives = 275/484 (56.82%), Query Frame = 0


Query: 818  EDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGAY 877
            ++P T+ +A E +    W  AM+ E+ +M     W++   P   KPIGCKW+YK K  + 
Sbjct: 84   KEPSTYNEAKEFL---VWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSD 143

Query: 878  GKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFL 937
            G ++ +KARLVAKGYTQ EG+D+ ETFSPV  L S++++L+I+A +++ + Q+D+  AFL
Sbjct: 144  GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 203

Query: 938  NGNLEETIYMQQPEGFIIPGQE----QKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFD 997
            NG+L+E IYM+ P G+     +      +C L +SIYGLKQASR W ++F   +  +GF 
Sbjct: 204  NGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFV 263

Query: 998  QIVDEPCVYKRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVL 1057
            Q   +   + +I       +++YVDDI++  N+   + ++K  L + F+++DLG  ++ L
Sbjct: 264  QSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFL 323

Query: 1058 GIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEE 1117
            G++I R      + + Q  Y   ++ +  +   K   +P    VT S      +  D  +
Sbjct: 324  GLEIARSAAG--INICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAH----SGGDFVD 383

Query: 1118 MRHIPYASAVGSLMYAMLCPRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYT 1177
             +   Y   +G LMY  +  R DI +AV  +S++   P LAH  AV  IL Y++ T    
Sbjct: 384  AK--AYRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQG 443

Query: 1178 LVYGSK-DLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 1237
            L Y S+ ++ L  ++D+ FQ+ +D+R+ST+G    L    + W+S KQ  ++ S+ EAEY
Sbjct: 444  LFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEY 503

Query: 1238 VAACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYH 1297
             A   A  E +WL  F  +L++   +SKP  L+CDN+ A+  +     H+R KHIE   H
Sbjct: 504  RALSFATDEMMWLAQFFRELQL--PLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCH 553

[Close]

BLAST of Cmc11g0301991 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-22
Identity = 80/236 (33.90%), Postives = 120/236 (50.85%), Query Frame = 0


Query: 1012 FLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQA 1071
            +L+LYVDDILL G+   LL  +   L++ F MKDLG   + LGIQI        L LSQ 
Sbjct: 2    YLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSG--LFLSQT 61

Query: 1072 SYIDKIVVKYSMQNSK--RGLLPFRHGVTLSKEQCPKTPQDVEEMRHIPYASAVGSLMYA 1131
             Y ++I+    M + K     LP +   ++S  + P  P D        + S VG+L Y 
Sbjct: 62   KYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYP-DPSD--------FRSIVGALQYL 121

Query: 1132 MLCPRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYTL-VYGSKDLILTGYTD 1191
             L  RPDI YAV IV +    P LA +  +K +L+Y++ T  + L ++ +  L +  + D
Sbjct: 122  TL-TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCD 181

Query: 1192 SDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVW 1245
            SD+     +R+ST+G    L    + W + +Q  ++ S+ E EY A    A E  W
Sbjct: 182  SDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc11g0301991 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-14
Identity = 48/131 (36.64%), Postives = 73/131 (55.73%), Query Frame = 0


Query: 790 RRSGRVTNLPIRYMSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFN 849
           R    +  L  +Y SLT T T+      ++P +   A++D     W +AM  EL+++  N
Sbjct: 4   RSKAGINKLNPKY-SLTITTTI-----KKEPKSVIFALKD---PGWCQAMQEELDALSRN 63

Query: 850 SVWDLVDQPDGVKPIGCKWIYKRKRGAYGKVQTFKARLVAKGYTQVEGVDYEETFSPVAM 909
             W LV  P     +GCKW++K K  + G +   KARLVAKG+ Q EG+ + ET+SPV  
Sbjct: 64  KTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVR 123

Query: 910 LKSIRILLSIA 921
             +IR +L++A
Sbjct: 124 TATIRTILNVA 125

[Close]

BLAST of Cmc11g0301991 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 68.2 bits (165), Expect = 5.9e-11
Identity = 34/86 (39.53%), Postives = 46/86 (53.49%), Query Frame = 0


Query: 438 TQNKRLKISPKENAHLWHLRLGHINLNRIERLVKNGLLSELEENSLPVCESCLEGKMTKR 497
           T    L  + K+   LWH RL H++   +E LVK G L   + +SL  CE C+ GK  + 
Sbjct: 56  TGESNLAETAKDETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRV 115

Query: 498 PFTGKGHRAKEPLELVHSDLCGPMNV 524
            F+   H  K PL+ VHSDL G  +V
Sbjct: 116 NFSTGQHTTKNPLDYVHSDLWGAPSV 141

[Close]

BLAST of Cmc11g0301991 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 6.7e-07
Identity = 29/82 (35.37%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 618 NRTLLDMVRSMMSYAHLPNSFWGYAVQTAVYILNCVPSKSVS-ETPLKLWNGRKGSLRHF 677
           NRT+++ VRSM+    LP +F   A  TAV+I+N  PS +++   P ++W     +  + 
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 678 RIWGCPAHVLENNPKKLEPRSK 699
           R +GC A++   +  KL+PR+K
Sbjct: 62  RRFGCVAYI-HCDEGKLKPRAK 82

The following BLAST results are available for this feature:

BLAST of Cmc11g0301991 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035879.1	0.0e+00	99.78	gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumi...	[more]
KAA0031826.1	0.0e+00	99.70	gag/pol protein [Cucumis melo var. makuwa] >KAA0032384.1 gag/pol protein [Cucumi...	[more]
KAA0048404.1	0.0e+00	99.63	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	0.0e+00	99.77	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	0.0e+00	99.70	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0301991 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.7e-218	34.81	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.1e-152	29.03	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	3.1e-134	26.68	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.2e-132	26.38	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q12491	2.6e-35	20.21	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc11g0301991 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CPJ6	0.0e+00	99.78	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7SMH8	0.0e+00	99.70	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5A7TZD7	0.0e+00	99.63	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G0013...	[more]
A0A5D3CSZ6	0.0e+00	99.77	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G0032...	[more]
A0A5A7UGV2	0.0e+00	99.70	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G00269...	[more]

BLAST of Cmc11g0301991 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	7.0e-81	35.12	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	2.5e-22	33.90	DNA/RNA polymerases superfamily protein	[more]
ATMG00820.1	1.1e-14	36.64	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00300.1	5.9e-11	39.53	Gag-Pol-related retrotransposon family protein	[more]
ATMG00710.1	6.7e-07	35.37	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 551..571
None	No IPR available	GENE3D	4.10.60.10		coord: 255..296 e-value: 5.5E-7 score: 31.8
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 62..193 e-value: 2.5E-17 score: 62.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..246
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..229
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 773..792
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 308..1174
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 1184..1325 e-value: 9.97877E-64 score: 210.788
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 262..278 e-value: 2.3E-4 score: 30.5
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 262..278 e-value: 2.8E-5 score: 24.0
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 263..278 score: 10.097754
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 502..678 e-value: 3.2E-39 score: 136.3
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 507..608 e-value: 1.1E-10 score: 41.7
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 505..670 score: 23.412086
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 849..1092 e-value: 1.5E-75 score: 254.0
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 445..494 e-value: 5.1E-14 score: 51.9
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 253..283
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 849..1292
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 504..664

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0301991.1	Cmc11g0301991.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding