Cmc11g0301881 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0301881
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 22418656 .. 22419919 (+)
RNA-Seq Expression	Cmc11g0301881
Synteny	Cmc11g0301881

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTCCAAAGAAAAGATAAAAGCATGTCAGGTAGAGGTAGCAAACCATGTGTTAGATGTAACTTTTCTAGTTTTAGACATGCGAGATTTTGATGTAATCCTAGGCATGGATTGGTTATTTGCCAGCCATGCAAGTATAGACTGTTCCCATAAGGAGATAGTTTTTAACCCTCATTTAGTGGCTAGTTTCAAGTTTAAGGGGGCAGGGACTGTGGTCCTACCCAAGGTTATCTCAGCTATGAAAGCCAGTAAGCTACTTAACCAGGGTACTTGGAGTATCTTGGCCAGCGTAGTAGACACTAGAGAGTTAGAAATTTCCTTGTCATCTGAACTTGTGGTAAGAGAATATCCTAACGTTTTCCCTGATGAGCTTCCAGGACTTCCACCTCTCAGGAAGATCGACTTTGCTATTGAGTTGGAGCCAAACACTGCTCCAATATTTAGAGCTCCTTATAGAATGGCCCTAGTTAAGCTGAAAGAGCTGAAGGTTCAGTTGCAGAAGTTGCTGGACGAGGGTTTCATTCGACCTAGTGTGTCACCTTGGGGAGCACCTGTACTGTTTGTGAAGAAGAAAGACGAATTGATGCACCTTTGCATCAATTATAGAGAGTTGAATAAGGTAACAGTAAAGAACCGCTATCCATTACCCAGAATTGATGACTTGTTTGATCAGCTACAAGGAGCCACTATTTTTTTTAAGATTGATTTACGTTCAGACTATCACCAGCTGAGGATTAGAGACAATGATATTCCTAAGACTGCTTTTCGTTTCAGATATGGGCATTACGAGTTCATTGTAATTTTTTTTTTGCTTGATCAATGCTCCTGCTGTATTTATGGATCTGATGAACATAGTGTTTAAGGATTTCTTAGATACTTTTGTTATAGTTTTTATTGATGACATCTTGGTTTACTCCAAGATAGAAGCTGAGCATGAGGAGCATTTGCATCAGATTTTGGAGACTCTTTGAGCCAATAAACTATATGCTAAGTTTTCTAAGTGTGAGTTATGGTTGAAGAAGGTGTCATTTCTTGGCCATGTAGTATCTAGTGCAGGAGTCTCTATAGACCCAACGAAGATTGATGCTGTTACAATTTGGCCTCGACCCTCTACAGTCAGTGAAGTTTGTAGTTTTCTGGGTTTAACAGGTTATTATAGAAGGTTCATGGAAGATTTCTCTCGTATAGCCAGTCCTTTGACTCAGTTGACTAGGAAAGGGACTCCTTTTGTTTGGAGTCCGACATGTGAGAGTAATTTCTAG

mRNA sequence

ATGTTGTCCAAAGAAAAGATAAAAGCATGTCAGGTAGAGGTAGCAAACCATGTGTTAGATGTAACTTTTCTAGTTTTAGACATGCGAGATTTTGATGTAATCCTAGGCATGGATTGGTTATTTGCCAGCCATGCAAGTATAGACTGTTCCCATAAGGAGATAGTTTTTAACCCTCATTTAGTGGCTAGTTTCAAGTTTAAGGGGGCAGGGACTGTGGTCCTACCCAAGGTTATCTCAGCTATGAAAGCCAGTAAGCTACTTAACCAGGGTACTTGGAGTATCTTGGCCAGCGTAGTAGACACTAGAGAGTTAGAAATTTCCTTGTCATCTGAACTTGTGGTAAGAGAATATCCTAACGTTTTCCCTGATGAGCTTCCAGGACTTCCACCTCTCAGGAAGATCGACTTTGCTATTGAGTTGGAGCCAAACACTGCTCCAATATTTAGAGCTCCTTATAGAATGGCCCTAGTTAAGCTGAAAGAGCTGAAGGTTCAGTTGCAGAAGTTGCTGGACGAGGGTTTCATTCGACCTAGTGTGTCACCTTGGGGAGCACCTGTACTGTTTGTGAAGAAGAAAGACGAATTGATGCACCTTTGCATCAATTATAGAGAGTTGAATAAGGTAACAGTAAAGAACCGCTATCCATTACCCAGAATTGATGACTTGTTTGATCAGCTACAAGGAGCCACTATTTTTTTTAAGATTGATTTACGTTCAGACTATCACCAGCTGAGGATTAGAGACAATGATATTCCTAAGACTGCTTTTCGTTTCAGATATGGGCATTACGAGTTCATTGTGTCATTTCTTGGCCATGTAGTATCTAGTGCAGGAGTCTCTATAGACCCAACGAAGATTGATGCTGTTACAATTTGGCCTCGACCCTCTACAGTCAGTGAAGTTTGTAGTTTTCTGGGTTTAACAGGTTATTATAGAAGGTTCATGGAAGATTTCTCTCGTATAGCCAGTCCTTTGACTCAGTTGACTAGGAAAGGGACTCCTTTTGTTTGGAGTCCGACATGTGAGAGTAATTTCTAG

Coding sequence (CDS)

ATGTTGTCCAAAGAAAAGATAAAAGCATGTCAGGTAGAGGTAGCAAACCATGTGTTAGATGTAACTTTTCTAGTTTTAGACATGCGAGATTTTGATGTAATCCTAGGCATGGATTGGTTATTTGCCAGCCATGCAAGTATAGACTGTTCCCATAAGGAGATAGTTTTTAACCCTCATTTAGTGGCTAGTTTCAAGTTTAAGGGGGCAGGGACTGTGGTCCTACCCAAGGTTATCTCAGCTATGAAAGCCAGTAAGCTACTTAACCAGGGTACTTGGAGTATCTTGGCCAGCGTAGTAGACACTAGAGAGTTAGAAATTTCCTTGTCATCTGAACTTGTGGTAAGAGAATATCCTAACGTTTTCCCTGATGAGCTTCCAGGACTTCCACCTCTCAGGAAGATCGACTTTGCTATTGAGTTGGAGCCAAACACTGCTCCAATATTTAGAGCTCCTTATAGAATGGCCCTAGTTAAGCTGAAAGAGCTGAAGGTTCAGTTGCAGAAGTTGCTGGACGAGGGTTTCATTCGACCTAGTGTGTCACCTTGGGGAGCACCTGTACTGTTTGTGAAGAAGAAAGACGAATTGATGCACCTTTGCATCAATTATAGAGAGTTGAATAAGGTAACAGTAAAGAACCGCTATCCATTACCCAGAATTGATGACTTGTTTGATCAGCTACAAGGAGCCACTATTTTTTTTAAGATTGATTTACGTTCAGACTATCACCAGCTGAGGATTAGAGACAATGATATTCCTAAGACTGCTTTTCGTTTCAGATATGGGCATTACGAGTTCATTGTGTCATTTCTTGGCCATGTAGTATCTAGTGCAGGAGTCTCTATAGACCCAACGAAGATTGATGCTGTTACAATTTGGCCTCGACCCTCTACAGTCAGTGAAGTTTGTAGTTTTCTGGGTTTAACAGGTTATTATAGAAGGTTCATGGAAGATTTCTCTCGTATAGCCAGTCCTTTGACTCAGTTGACTAGGAAAGGGACTCCTTTTGTTTGGAGTCCGACATGTGAGAGTAATTTCTAG

Protein sequence

MLSKEKIKACQVEVANHVLDVTFLVLDMRDFDVILGMDWLFASHASIDCSHKEIVFNPHLVASFKFKGAGTVVLPKVISAMKASKLLNQGTWSILASVVDTRELEISLSSELVVREYPNVFPDELPGLPPLRKIDFAIELEPNTAPIFRAPYRMALVKLKELKVQLQKLLDEGFIRPSVSPWGAPVLFVKKKDELMHLCINYRELNKVTVKNRYPLPRIDDLFDQLQGATIFFKIDLRSDYHQLRIRDNDIPKTAFRFRYGHYEFIVSFLGHVVSSAGVSIDPTKIDAVTIWPRPSTVSEVCSFLGLTGYYRRFMEDFSRIASPLTQLTRKGTPFVWSPTCESNF

Homology

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BLAST of Cmc11g0301881 vs. NCBI nr
Match: KAA0054467.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK14572.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 614.8 bits (1584), Expect = 4.6e-172
Identity = 308/309 (99.68%), Postives = 308/309 (99.68%), Query Frame = 0


Query: 1   MLSKEKIKACQVEVANHVLDVTFLVLDMRDFDVILGMDWLFASHASIDCSHKEIVFNPHL 60
           MLSKEKIKACQVEVANHVLDVTFLVLDMRDFDVILGMDWLFASHASIDCSHKEIVFNPHL
Sbjct: 1   MLSKEKIKACQVEVANHVLDVTFLVLDMRDFDVILGMDWLFASHASIDCSHKEIVFNPHL 60

Query: 61  VASFKFKGAGTVVLPKVISAMKASKLLNQGTWSILASVVDTRELEISLSSELVVREYPNV 120
           VASFKFKGAGTVVLPKVISAMKASKLLNQGTWSILASVVDTRELEISLSSELVVREYPNV
Sbjct: 61  VASFKFKGAGTVVLPKVISAMKASKLLNQGTWSILASVVDTRELEISLSSELVVREYPNV 120

Query: 121 FPDELPGLPPLRKIDFAIELEPNTAPIFRAPYRMALVKLKELKVQLQKLLDEGFIRPSVS 180
           FPDELPGLPPLRKIDFAIELEPNTAPIFRAPYRMALVKLKELKVQLQKLLDEGFIRPSVS
Sbjct: 121 FPDELPGLPPLRKIDFAIELEPNTAPIFRAPYRMALVKLKELKVQLQKLLDEGFIRPSVS 180

Query: 181 PWGAPVLFVKKKDELMHLCINYRELNKVTVKNRYPLPRIDDLFDQLQGATIFFKIDLRSD 240
           PWGAPVLFVKKKDELMHLCINYRELNKVTVKNRYPLPRIDDLFDQLQGATIFFKIDLRSD
Sbjct: 181 PWGAPVLFVKKKDELMHLCINYRELNKVTVKNRYPLPRIDDLFDQLQGATIFFKIDLRSD 240

Query: 241 YHQLRIRDNDIPKTAFRFRYGHYEFI-VSFLGHVVSSAGVSIDPTKIDAVTIWPRPSTVS 300
           YHQLRIRDNDIPKTAFRFRYGHYEFI VSFLGHVVSSAGVSIDPTKIDAVTIWPRPSTVS
Sbjct: 241 YHQLRIRDNDIPKTAFRFRYGHYEFIKVSFLGHVVSSAGVSIDPTKIDAVTIWPRPSTVS 300

Query: 301 EVCSFLGLT 309
           EVCSFLGLT
Sbjct: 301 EVCSFLGLT 309

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BLAST of Cmc11g0301881 vs. NCBI nr
Match: KAA0039192.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 560.8 bits (1444), Expect = 8.0e-156
Identity = 286/387 (73.90%), Postives = 312/387 (80.62%), Query Frame = 0


Query: 1   MLSKEKIKACQVEVANHVLDVTFLVLDMRDFDVILGMDWLFASHASIDCSHKEIVFNPHL 60
           +LSKEKIKAC+VE+ANH+LDVT LVLDM+DFDVILGMDWL A+HA+IDC  KE+VFNP  
Sbjct: 231 LLSKEKIKACRVEIANHMLDVTLLVLDMQDFDVILGMDWLSANHANIDCFGKEVVFNPPS 290

Query: 61  VASFKFKGAGTVVLPKVISAMKASKLLNQGTWSILASVVDTRELEISLSSELVVREYPNV 120
            ASFKF+GAG V +PKVISAMKASKLL+QGTW ILASVVD RELE+SLSSE VVREYP+V
Sbjct: 291 GASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDIRELEVSLSSEPVVREYPDV 350

Query: 121 FPDELPGLPPLRKIDFAIELEPNTAPIFRAPYRMALVKLKELKVQLQKLLDEGFIRPSVS 180
           FPDELPGLPP R++DFAIELEP TAPI RAPYRMA  +LKELKVQLQ+LLD+GFIRPSVS
Sbjct: 351 FPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 410

Query: 181 PWGAPVLFVKKKDELMHLCINYRELNKVTVKNRYPLPRIDDLFDQLQGATIFFKIDLRSD 240
           PWGA VLFVKKKD  M LCI+YRELNKVTVKN YPLPRIDDLFDQLQGATIF KIDLRS 
Sbjct: 411 PWGAAVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATIFSKIDLRSG 470

Query: 241 YHQLRIRDNDIPKTAFRFRYGHYEFI---------------------------------- 300
           YHQLRIRD+DI KTAFR RYGHYEFI                                  
Sbjct: 471 YHQLRIRDSDILKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVLETLRANKLYAKFS 530

Query: 301 --------VSFLGHVVSSAGVSIDPTKIDAVTIWPRPSTVSEVCSFLGLTGYYRRFMEDF 346
                   V+FLGHVVSS GVS+DP KI+AVT WPRPSTVSE+  FLGL GYYRRF+EDF
Sbjct: 531 KCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRRFLGLAGYYRRFVEDF 590

[Close]

BLAST of Cmc11g0301881 vs. NCBI nr
Match: KAA0046133.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 555.1 bits (1429), Expect = 4.4e-154
Identity = 284/397 (71.54%), Postives = 313/397 (78.84%), Query Frame = 0


Query: 1   MLSKEKIKACQVEVANHVLDVTFLVLDMRDFDVILGMDWLFASHASIDCSHKEIVFNPHL 60
           +LSKEKIKAC+VE+ANH+LDVT LVLDM+DFDVILGMDWL A+HA+IDC  K++VFNP  
Sbjct: 208 LLSKEKIKACRVEIANHMLDVTLLVLDMQDFDVILGMDWLSANHANIDCFGKKVVFNPPS 267

Query: 61  VASFKFKGAGTVVLPKVISAMKASKLLNQGTWSILASVVDTRELEISLSSELVVREYPNV 120
            ++FKF+GAG V LPKVISAMKASKLL+QGTW ILASVVDTRELE+SLSSE +VREYP+V
Sbjct: 268 GSNFKFRGAGIVCLPKVISAMKASKLLSQGTWGILASVVDTRELEVSLSSEPLVREYPDV 327

Query: 121 FPDELPGLPPLRKIDFAIELEPNTAPIFRAPYRMALVKLKELKVQLQKLLDEGFIRPSVS 180
           FPDELP LPP R+IDFAIELEP+T PI RAPYRMA  +LKELKVQLQKLLD+GFIRPSVS
Sbjct: 328 FPDELPRLPPPREIDFAIELEPDTTPISRAPYRMAPAELKELKVQLQKLLDKGFIRPSVS 387

Query: 181 PWGAPVLFVKKKDELMHLCINYRELNKVTVKNRYPLPRIDDLFDQLQGATIFFKIDLRSD 240
           PWGAPVLF KKKD  M LCI+YRELNKVTVKNRYPLPRIDDLFDQLQGAT+F KIDLRS 
Sbjct: 388 PWGAPVLFGKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSG 447

Query: 241 YHQLRIRDNDIPKTAFRFRYGHYEFI---------------------------------- 300
           YHQLRIRD+DIPKTAFR R+ HYEFI                                  
Sbjct: 448 YHQLRIRDSDIPKTAFRSRHRHYEFIVMSFGLTNALAVFMDLMNRVFKDFLDSFVIVFID 507

Query: 301 ------------------VSFLGHVVSSAGVSIDPTKIDAVTIWPRPSTVSEVCSFLGLT 346
                             VSFLGHVVSS GVS+DP KI+ VT WPRPSTVSE+ SFLGL 
Sbjct: 508 DILIYSKTEAEHEEHLHQVSFLGHVVSSEGVSVDPAKIEVVTNWPRPSTVSEIRSFLGLA 567

[Close]

BLAST of Cmc11g0301881 vs. NCBI nr
Match: KAA0051719.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 553.5 bits (1425), Expect = 1.3e-153
Identity = 286/420 (68.10%), Postives = 315/420 (75.00%), Query Frame = 0


Query: 1   MLSKEKIKACQVEVANHVLDVTFLVLDMRDFDVILGMDWLFASHASIDCSHKEIVFNPHL 60
           +LSKEKIKAC+VE+ANH+LDVT LVLDM+DFDVILGMDWL A+HA+IDC  KE+VFNP  
Sbjct: 406 LLSKEKIKACRVEIANHMLDVTLLVLDMQDFDVILGMDWLSANHANIDCFGKEVVFNPPS 465

Query: 61  VASFKFKGAGTVVLPKVISAMKASKLLNQGTWSILASVVDTRELEISLSSELVVREYPNV 120
            ASFKF+GA  V +PKVISAMKASKLL+QGTW ILASVVD RE E+SLSSELVVREYP+V
Sbjct: 466 GASFKFRGADMVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVSLSSELVVREYPDV 525

Query: 121 FPDELPGLPPLRKIDFAIELEPNTAPIFRAPYRMALVKLKELKVQLQKLLDEGFIRPSVS 180
           FPD+LPGLPPLR++DFAIELEP TAPI RAPYRMA  +LKELKVQLQ+LLD+GFIRPSVS
Sbjct: 526 FPDKLPGLPPLREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 585

Query: 181 PWGAPVLFVKKKDELMHLCINYRELNKVTVKNRYPLPRIDDLFDQLQGATIFFKIDLRSD 240
           PWGAPVLFVKKKD  M LCI+YRELNKVTVKN YPLPRIDDLFDQLQGAT+F KIDLRS 
Sbjct: 586 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSG 645

Query: 241 YHQLRIRDNDIPKTAFRFRYGHYEFI---------------------------------- 300
           YHQLR RD+DIPKTAFR RYGHYEFI                                  
Sbjct: 646 YHQLRFRDSDIPKTAFRLRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFID 705

Query: 301 -----------------------------------------VSFLGHVVSSAGVSIDPTK 346
                                                    V+FLGHVVSS GVS+DP K
Sbjct: 706 DILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAK 765

[Close]

BLAST of Cmc11g0301881 vs. NCBI nr
Match: TYK01306.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 553.5 bits (1425), Expect = 1.3e-153
Identity = 286/420 (68.10%), Postives = 316/420 (75.24%), Query Frame = 0


Query: 1   MLSKEKIKACQVEVANHVLDVTFLVLDMRDFDVILGMDWLFASHASIDCSHKEIVFNPHL 60
           +LSKE+IKAC+VE+ANH+L+VT LVLDM+DFDVILGMDWL A+HA+IDC  KE+VFNP  
Sbjct: 406 LLSKEQIKACRVEIANHMLNVTLLVLDMQDFDVILGMDWLSANHANIDCFGKEVVFNPPS 465

Query: 61  VASFKFKGAGTVVLPKVISAMKASKLLNQGTWSILASVVDTRELEISLSSELVVREYPNV 120
            ASFKF+GAG V +PKVISAMKASKLL+QGTW ILASVVD RE E+SLSSE VVREYP+V
Sbjct: 466 GASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDV 525

Query: 121 FPDELPGLPPLRKIDFAIELEPNTAPIFRAPYRMALVKLKELKVQLQKLLDEGFIRPSVS 180
           FPDELPGLPP R++DFAIELEP TAPI RAPYRMA  +LKELKVQLQ+LLD+GFIRPSVS
Sbjct: 526 FPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 585

Query: 181 PWGAPVLFVKKKDELMHLCINYRELNKVTVKNRYPLPRIDDLFDQLQGATIFFKIDLRSD 240
           PWGAPVLFVKKKD  M LCI+YRELNKVTVKNRYPLPRIDDLFDQLQGAT+F KIDLRS 
Sbjct: 586 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSG 645

Query: 241 YHQLRIRDNDIPKTAFRFRYGHYEFI---------------------------------- 300
           YHQLRIRD+DIPKTAFR RYGHYEFI                                  
Sbjct: 646 YHQLRIRDSDIPKTAFRLRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFID 705

Query: 301 -----------------------------------------VSFLGHVVSSAGVSIDPTK 346
                                                    V+FLGHVVSS GVS+DP K
Sbjct: 706 DILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAK 765

[Close]

BLAST of Cmc11g0301881 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.4e-33
Identity = 103/395 (26.08%), Postives = 175/395 (44.30%), Query Frame = 0


Query: 20  DVTFLVL-DMRDFDVILGMDWLFASHASIDCSHKEIVFNPHLVASFKFKGAGTVVLPKVI 79
           D+TF VL ++  FD I+G D L    A +D  +  ++  P +          ++ +  ++
Sbjct: 19  DITFFVLPNLHSFDGIIGDDTLKDLKAIVDRKNNCLIITPGI--KIPLLARASINVNPLL 78

Query: 80  SAMKASKLLNQGTWSILASVVDTRELEISLSSELVVREYPNVFPDELPGLPPLRKIDFAI 139
           +A         GT  IL S++                E+P +F   L G+     ++ A+
Sbjct: 79  AAEHP-----DGTQEILNSLLG---------------EFPRIFEPPLSGM----SVETAV 138

Query: 140 ELEPNT---APIFRAPYRMALVKLKELKVQLQKLLDEGFIRPSVSPWGAPVLFVKKK--- 199
           + E  T    PI+   Y   +    E++ Q+ +LL +G IRPS SP+ +P+  V KK   
Sbjct: 139 KAEIRTNTQDPIYAKSYPYPVNMRGEVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKP 198

Query: 200 --DELMHLCINYRELNKVTVKNRYPLPRIDDLFDQLQGATIFFKIDLRSDYHQLRIRDND 259
             ++   + ++++ LN VT+ + YP+P I+     L  A  F  +DL S +HQ+ ++++D
Sbjct: 199 NGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESD 258

Query: 260 IPKTAFRFRYGHYEFI-------------------------------------------- 319
           IPKTAF    G YEF+                                            
Sbjct: 259 IPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYD 318

Query: 320 -------------------------------VSFLGHVVSSAGVSIDPTKIDAVTIWPRP 331
                                          V FLG++V++ G+  DP K+ A++  P P
Sbjct: 319 THWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPP 378

[Close]

BLAST of Cmc11g0301881 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.7e-28
Identity = 73/271 (26.94%), Postives = 124/271 (45.76%), Query Frame = 0


Query: 143 NTAPIFRAPYRMALVKLKELKVQLQKLLDEGFIRPSVSPWGAPVLFVKKKDEL-----MH 202
           + +PI+   Y +A     E++ Q+Q++L++G IR S SP+ +P   V KK +        
Sbjct: 203 HNSPIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYR 262

Query: 203 LCINYRELNKVTVKNRYPLPRIDDLFDQLQGATIFFKIDLRSDYHQLRIRDNDIPKTAFR 262
           + I+YR+LN++T+ +RYP+P +D++  +L     F  IDL   +HQ+ + +  I KTAF 
Sbjct: 263 VVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFS 322

Query: 263 FRYGHYEFI--------------------------------------------------- 322
            + GHYE++                                                   
Sbjct: 323 TKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQ 382

Query: 323 ------------------------VSFLGHVVSSAGVSIDPTKIDAVTIWPRPSTVSEVC 334
                                    +FLGH+V+  G+  +P K+ A+  +P P+   E+ 
Sbjct: 383 LVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIR 442

[Close]

BLAST of Cmc11g0301881 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.5e-27
Identity = 69/252 (27.38%), Postives = 118/252 (46.83%), Query Frame = 0


Query: 160 KELKVQLQKLLDEGFIRPSVSPWGAPVLFVKKKDEL-----MHLCINYRELNKVTVKNRY 219
           +E++ Q+Q +L++G IR S SP+ +P+  V KK +        + I+YR+LN++TV +R+
Sbjct: 221 QEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRH 280

Query: 220 PLPRIDDLFDQLQGATIFFKIDLRSDYHQLRIRDNDIPKTAFRFRYGHYEFI-------- 279
           P+P +D++  +L     F  IDL   +HQ+ +    + KTAF  ++GHYE++        
Sbjct: 281 PIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKN 340

Query: 280 ------------------------------------------------------------ 332
                                                                       
Sbjct: 341 APATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDK 400

[Close]

BLAST of Cmc11g0301881 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 119.4 bits (298), Expect = 8.0e-26
Identity = 81/287 (28.22%), Postives = 119/287 (41.46%), Query Frame = 0


Query: 115 REYPNVFPDELPGLPP---LRKIDFAIELEPNTAPIFRAPYRMALVKLKELKVQLQKLLD 174
           ++Y  +  ++LP  P       +   IE++P        PY +     +E+   +QKLLD
Sbjct: 562 QKYREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLD 621

Query: 175 EGFIRPSVSPWGAPVLFVKKKDELMHLCINYRELNKVTVKNRYPLPRIDDLFDQLQGATI 234
             FI PS SP  +PV+ V KKD    LC++YR LNK T+ + +PLPRID+L  ++  A I
Sbjct: 622 NKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQI 681

Query: 235 FFKIDLRSDYHQLRIRDNDIPKTAFRFRYGHYEFIV------------------------ 294
           F  +DL S YHQ+ +   D  KTAF    G YE+ V                        
Sbjct: 682 FTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLR 741

Query: 295 -------------------------------------------------SFLGHVVSSAG 326
                                                             FLG+ +    
Sbjct: 742 FVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQK 801

[Close]

BLAST of Cmc11g0301881 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 119.4 bits (298), Expect = 8.0e-26
Identity = 81/287 (28.22%), Postives = 119/287 (41.46%), Query Frame = 0


Query: 115 REYPNVFPDELPGLPP---LRKIDFAIELEPNTAPIFRAPYRMALVKLKELKVQLQKLLD 174
           ++Y  +  ++LP  P       +   IE++P        PY +     +E+   +QKLLD
Sbjct: 588 QKYREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLD 647

Query: 175 EGFIRPSVSPWGAPVLFVKKKDELMHLCINYRELNKVTVKNRYPLPRIDDLFDQLQGATI 234
             FI PS SP  +PV+ V KKD    LC++YR LNK T+ + +PLPRID+L  ++  A I
Sbjct: 648 NKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQI 707

Query: 235 FFKIDLRSDYHQLRIRDNDIPKTAFRFRYGHYEFIV------------------------ 294
           F  +DL S YHQ+ +   D  KTAF    G YE+ V                        
Sbjct: 708 FTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLR 767

Query: 295 -------------------------------------------------SFLGHVVSSAG 326
                                                             FLG+ +    
Sbjct: 768 FVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQK 827

[Close]

BLAST of Cmc11g0301881 vs. ExPASy TrEMBL
Match: A0A5A7UIS2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00620 PE=4 SV=1)

HSP 1 Score: 614.8 bits (1584), Expect = 2.2e-172
Identity = 308/309 (99.68%), Postives = 308/309 (99.68%), Query Frame = 0


Query: 1   MLSKEKIKACQVEVANHVLDVTFLVLDMRDFDVILGMDWLFASHASIDCSHKEIVFNPHL 60
           MLSKEKIKACQVEVANHVLDVTFLVLDMRDFDVILGMDWLFASHASIDCSHKEIVFNPHL
Sbjct: 1   MLSKEKIKACQVEVANHVLDVTFLVLDMRDFDVILGMDWLFASHASIDCSHKEIVFNPHL 60

Query: 61  VASFKFKGAGTVVLPKVISAMKASKLLNQGTWSILASVVDTRELEISLSSELVVREYPNV 120
           VASFKFKGAGTVVLPKVISAMKASKLLNQGTWSILASVVDTRELEISLSSELVVREYPNV
Sbjct: 61  VASFKFKGAGTVVLPKVISAMKASKLLNQGTWSILASVVDTRELEISLSSELVVREYPNV 120

Query: 121 FPDELPGLPPLRKIDFAIELEPNTAPIFRAPYRMALVKLKELKVQLQKLLDEGFIRPSVS 180
           FPDELPGLPPLRKIDFAIELEPNTAPIFRAPYRMALVKLKELKVQLQKLLDEGFIRPSVS
Sbjct: 121 FPDELPGLPPLRKIDFAIELEPNTAPIFRAPYRMALVKLKELKVQLQKLLDEGFIRPSVS 180

Query: 181 PWGAPVLFVKKKDELMHLCINYRELNKVTVKNRYPLPRIDDLFDQLQGATIFFKIDLRSD 240
           PWGAPVLFVKKKDELMHLCINYRELNKVTVKNRYPLPRIDDLFDQLQGATIFFKIDLRSD
Sbjct: 181 PWGAPVLFVKKKDELMHLCINYRELNKVTVKNRYPLPRIDDLFDQLQGATIFFKIDLRSD 240

Query: 241 YHQLRIRDNDIPKTAFRFRYGHYEFI-VSFLGHVVSSAGVSIDPTKIDAVTIWPRPSTVS 300
           YHQLRIRDNDIPKTAFRFRYGHYEFI VSFLGHVVSSAGVSIDPTKIDAVTIWPRPSTVS
Sbjct: 241 YHQLRIRDNDIPKTAFRFRYGHYEFIKVSFLGHVVSSAGVSIDPTKIDAVTIWPRPSTVS 300

Query: 301 EVCSFLGLT 309
           EVCSFLGLT
Sbjct: 301 EVCSFLGLT 309

[Close]

BLAST of Cmc11g0301881 vs. ExPASy TrEMBL
Match: A0A5A7T6S9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G001050 PE=4 SV=1)

HSP 1 Score: 560.8 bits (1444), Expect = 3.9e-156
Identity = 286/387 (73.90%), Postives = 312/387 (80.62%), Query Frame = 0


Query: 1   MLSKEKIKACQVEVANHVLDVTFLVLDMRDFDVILGMDWLFASHASIDCSHKEIVFNPHL 60
           +LSKEKIKAC+VE+ANH+LDVT LVLDM+DFDVILGMDWL A+HA+IDC  KE+VFNP  
Sbjct: 231 LLSKEKIKACRVEIANHMLDVTLLVLDMQDFDVILGMDWLSANHANIDCFGKEVVFNPPS 290

Query: 61  VASFKFKGAGTVVLPKVISAMKASKLLNQGTWSILASVVDTRELEISLSSELVVREYPNV 120
            ASFKF+GAG V +PKVISAMKASKLL+QGTW ILASVVD RELE+SLSSE VVREYP+V
Sbjct: 291 GASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDIRELEVSLSSEPVVREYPDV 350

Query: 121 FPDELPGLPPLRKIDFAIELEPNTAPIFRAPYRMALVKLKELKVQLQKLLDEGFIRPSVS 180
           FPDELPGLPP R++DFAIELEP TAPI RAPYRMA  +LKELKVQLQ+LLD+GFIRPSVS
Sbjct: 351 FPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 410

Query: 181 PWGAPVLFVKKKDELMHLCINYRELNKVTVKNRYPLPRIDDLFDQLQGATIFFKIDLRSD 240
           PWGA VLFVKKKD  M LCI+YRELNKVTVKN YPLPRIDDLFDQLQGATIF KIDLRS 
Sbjct: 411 PWGAAVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATIFSKIDLRSG 470

Query: 241 YHQLRIRDNDIPKTAFRFRYGHYEFI---------------------------------- 300
           YHQLRIRD+DI KTAFR RYGHYEFI                                  
Sbjct: 471 YHQLRIRDSDILKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVLETLRANKLYAKFS 530

Query: 301 --------VSFLGHVVSSAGVSIDPTKIDAVTIWPRPSTVSEVCSFLGLTGYYRRFMEDF 346
                   V+FLGHVVSS GVS+DP KI+AVT WPRPSTVSE+  FLGL GYYRRF+EDF
Sbjct: 531 KCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRRFLGLAGYYRRFVEDF 590

[Close]

BLAST of Cmc11g0301881 vs. ExPASy TrEMBL
Match: A0A5A7TRD6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00720 PE=4 SV=1)

HSP 1 Score: 555.1 bits (1429), Expect = 2.1e-154
Identity = 284/397 (71.54%), Postives = 313/397 (78.84%), Query Frame = 0


Query: 1   MLSKEKIKACQVEVANHVLDVTFLVLDMRDFDVILGMDWLFASHASIDCSHKEIVFNPHL 60
           +LSKEKIKAC+VE+ANH+LDVT LVLDM+DFDVILGMDWL A+HA+IDC  K++VFNP  
Sbjct: 208 LLSKEKIKACRVEIANHMLDVTLLVLDMQDFDVILGMDWLSANHANIDCFGKKVVFNPPS 267

Query: 61  VASFKFKGAGTVVLPKVISAMKASKLLNQGTWSILASVVDTRELEISLSSELVVREYPNV 120
            ++FKF+GAG V LPKVISAMKASKLL+QGTW ILASVVDTRELE+SLSSE +VREYP+V
Sbjct: 268 GSNFKFRGAGIVCLPKVISAMKASKLLSQGTWGILASVVDTRELEVSLSSEPLVREYPDV 327

Query: 121 FPDELPGLPPLRKIDFAIELEPNTAPIFRAPYRMALVKLKELKVQLQKLLDEGFIRPSVS 180
           FPDELP LPP R+IDFAIELEP+T PI RAPYRMA  +LKELKVQLQKLLD+GFIRPSVS
Sbjct: 328 FPDELPRLPPPREIDFAIELEPDTTPISRAPYRMAPAELKELKVQLQKLLDKGFIRPSVS 387

Query: 181 PWGAPVLFVKKKDELMHLCINYRELNKVTVKNRYPLPRIDDLFDQLQGATIFFKIDLRSD 240
           PWGAPVLF KKKD  M LCI+YRELNKVTVKNRYPLPRIDDLFDQLQGAT+F KIDLRS 
Sbjct: 388 PWGAPVLFGKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSG 447

Query: 241 YHQLRIRDNDIPKTAFRFRYGHYEFI---------------------------------- 300
           YHQLRIRD+DIPKTAFR R+ HYEFI                                  
Sbjct: 448 YHQLRIRDSDIPKTAFRSRHRHYEFIVMSFGLTNALAVFMDLMNRVFKDFLDSFVIVFID 507

Query: 301 ------------------VSFLGHVVSSAGVSIDPTKIDAVTIWPRPSTVSEVCSFLGLT 346
                             VSFLGHVVSS GVS+DP KI+ VT WPRPSTVSE+ SFLGL 
Sbjct: 508 DILIYSKTEAEHEEHLHQVSFLGHVVSSEGVSVDPAKIEVVTNWPRPSTVSEIRSFLGLA 567

[Close]

BLAST of Cmc11g0301881 vs. ExPASy TrEMBL
Match: A0A5A7UE01 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G001050 PE=4 SV=1)

HSP 1 Score: 553.5 bits (1425), Expect = 6.2e-154
Identity = 286/420 (68.10%), Postives = 315/420 (75.00%), Query Frame = 0


Query: 1   MLSKEKIKACQVEVANHVLDVTFLVLDMRDFDVILGMDWLFASHASIDCSHKEIVFNPHL 60
           +LSKEKIKAC+VE+ANH+LDVT LVLDM+DFDVILGMDWL A+HA+IDC  KE+VFNP  
Sbjct: 406 LLSKEKIKACRVEIANHMLDVTLLVLDMQDFDVILGMDWLSANHANIDCFGKEVVFNPPS 465

Query: 61  VASFKFKGAGTVVLPKVISAMKASKLLNQGTWSILASVVDTRELEISLSSELVVREYPNV 120
            ASFKF+GA  V +PKVISAMKASKLL+QGTW ILASVVD RE E+SLSSELVVREYP+V
Sbjct: 466 GASFKFRGADMVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVSLSSELVVREYPDV 525

Query: 121 FPDELPGLPPLRKIDFAIELEPNTAPIFRAPYRMALVKLKELKVQLQKLLDEGFIRPSVS 180
           FPD+LPGLPPLR++DFAIELEP TAPI RAPYRMA  +LKELKVQLQ+LLD+GFIRPSVS
Sbjct: 526 FPDKLPGLPPLREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 585

Query: 181 PWGAPVLFVKKKDELMHLCINYRELNKVTVKNRYPLPRIDDLFDQLQGATIFFKIDLRSD 240
           PWGAPVLFVKKKD  M LCI+YRELNKVTVKN YPLPRIDDLFDQLQGAT+F KIDLRS 
Sbjct: 586 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSG 645

Query: 241 YHQLRIRDNDIPKTAFRFRYGHYEFI---------------------------------- 300
           YHQLR RD+DIPKTAFR RYGHYEFI                                  
Sbjct: 646 YHQLRFRDSDIPKTAFRLRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFID 705

Query: 301 -----------------------------------------VSFLGHVVSSAGVSIDPTK 346
                                                    V+FLGHVVSS GVS+DP K
Sbjct: 706 DILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAK 765

[Close]

BLAST of Cmc11g0301881 vs. ExPASy TrEMBL
Match: A0A5D3BSV9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold827G00060 PE=4 SV=1)

HSP 1 Score: 553.5 bits (1425), Expect = 6.2e-154
Identity = 286/420 (68.10%), Postives = 316/420 (75.24%), Query Frame = 0


Query: 1   MLSKEKIKACQVEVANHVLDVTFLVLDMRDFDVILGMDWLFASHASIDCSHKEIVFNPHL 60
           +LSKE+IKAC+VE+ANH+L+VT LVLDM+DFDVILGMDWL A+HA+IDC  KE+VFNP  
Sbjct: 406 LLSKEQIKACRVEIANHMLNVTLLVLDMQDFDVILGMDWLSANHANIDCFGKEVVFNPPS 465

Query: 61  VASFKFKGAGTVVLPKVISAMKASKLLNQGTWSILASVVDTRELEISLSSELVVREYPNV 120
            ASFKF+GAG V +PKVISAMKASKLL+QGTW ILASVVD RE E+SLSSE VVREYP+V
Sbjct: 466 GASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDV 525

Query: 121 FPDELPGLPPLRKIDFAIELEPNTAPIFRAPYRMALVKLKELKVQLQKLLDEGFIRPSVS 180
           FPDELPGLPP R++DFAIELEP TAPI RAPYRMA  +LKELKVQLQ+LLD+GFIRPSVS
Sbjct: 526 FPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 585

Query: 181 PWGAPVLFVKKKDELMHLCINYRELNKVTVKNRYPLPRIDDLFDQLQGATIFFKIDLRSD 240
           PWGAPVLFVKKKD  M LCI+YRELNKVTVKNRYPLPRIDDLFDQLQGAT+F KIDLRS 
Sbjct: 586 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSG 645

Query: 241 YHQLRIRDNDIPKTAFRFRYGHYEFI---------------------------------- 300
           YHQLRIRD+DIPKTAFR RYGHYEFI                                  
Sbjct: 646 YHQLRIRDSDIPKTAFRLRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFID 705

Query: 301 -----------------------------------------VSFLGHVVSSAGVSIDPTK 346
                                                    V+FLGHVVSS GVS+DP K
Sbjct: 706 DILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAK 765

[Close]

BLAST of Cmc11g0301881 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-14
Identity = 32/69 (46.38%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 267 VSFLG--HVVSSAGVSIDPTKIDAVTIWPRPSTVSEVCSFLGLTGYYRRFMEDFSRIASP 326
           +++LG  H++S  GVS DP K++A+  WP P   +E+  FLGLTGYYRRF++++ +I  P
Sbjct: 30  IAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRP 89

Query: 327 LTQLTRKGT 334
           LT+L +K +
Sbjct: 90  LTELLKKNS 98

The following BLAST results are available for this feature:

BLAST of Cmc11g0301881 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054467.1	4.6e-172	99.68	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK14572.1 ty3-gyp...	[more]
KAA0039192.1	8.0e-156	73.90	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0046133.1	4.4e-154	71.54	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051719.1	1.3e-153	68.10	pol protein [Cucumis melo var. makuwa]	[more]
TYK01306.1	1.3e-153	68.10	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0301881 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8I7P9	1.4e-33	26.08	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P20825	1.7e-28	26.94	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	2.5e-27	27.38	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q99315	8.0e-26	28.22	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	8.0e-26	28.22	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc11g0301881 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UIS2	2.2e-172	99.68	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T6S9	3.9e-156	73.90	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold12...	[more]
A0A5A7TRD6	2.1e-154	71.54	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UE01	6.2e-154	68.10	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60...	[more]
A0A5D3BSV9	6.2e-154	68.10	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold82...	[more]

BLAST of Cmc11g0301881 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.1e-14	46.38	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 152..172
None	No IPR available	PFAM	PF08284	RVP_2	coord: 4..58 e-value: 1.8E-12 score: 47.2
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 135..269 e-value: 7.8E-50 score: 171.1
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 9..231
None	No IPR available	PANTHER	PTHR24559:SF330	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 9..231
None	No IPR available	CDD	cd01647	RT_LTR	coord: 173..267 e-value: 9.00132E-41 score: 139.268
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 1..40 e-value: 9.54108E-7 score: 44.6348
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 214..241 e-value: 7.8E-50 score: 171.1
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 284..345 e-value: 7.6E-21 score: 75.9
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 2..65 e-value: 4.3E-13 score: 51.1
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 114..345

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0301881.1	Cmc11g0301881.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding