Cmc11g0301511 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0301511
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Threonine synthase
Location	CMiso1.1chr11: 21838478 .. 21838660 (+)
RNA-Seq Expression	Cmc11g0301511
Synteny	Cmc11g0301511

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACAGCTTGTTCAACCCATTGCTAATGGAGCTTTTGTGTTGAGTATTGACACAGATTTTGATGGCTGTATGAAGTTAATAAGAGAAGTTACAGCAGAATTGCCAATTTATTTAGCTAATTCTTTGAATAGTTTGAGAATTGAAGGACGAAAAACAATAGCTATTGAAATTCTACAATAA

mRNA sequence

ATGGCACAGCTTGTTCAACCCATTGCTAATGGAGCTTTTGTGTTGAGTATTGACACAGATTTTGATGGCTGTATGAAGTTAATAAGAGAAGTTACAGCAGAATTGCCAATTTATTTAGCTAATTCTTTGAATAGTTTGAGAATTGAAGGACGAAAAACAATAGCTATTGAAATTCTACAATAA

Coding sequence (CDS)

ATGGCACAGCTTGTTCAACCCATTGCTAATGGAGCTTTTGTGTTGAGTATTGACACAGATTTTGATGGCTGTATGAAGTTAATAAGAGAAGTTACAGCAGAATTGCCAATTTATTTAGCTAATTCTTTGAATAGTTTGAGAATTGAAGGACGAAAAACAATAGCTATTGAAATTCTACAATAA

Protein sequence

MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLRIEGRKTIAIEILQ

Homology

[Close]

BLAST of Cmc11g0301511 vs. NCBI nr
Match: XP_021804962.1 (threonine synthase 1, chloroplastic-like [Prunus avium])

HSP 1 Score: 114.8 bits (286), Expect = 2.6e-22
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLRIEGRKTIAIEILQ 60
           MAQLVQPIANGAFVLSIDTDFDGCMKLIRE+TAELPIYLANSLNSLRIEG+KT AIEILQ
Sbjct: 266 MAQLVQPIANGAFVLSIDTDFDGCMKLIREITAELPIYLANSLNSLRIEGQKTAAIEILQ 325

[Close]

BLAST of Cmc11g0301511 vs. NCBI nr
Match: XP_022960888.1 (threonine synthase, chloroplastic [Cucurbita moschata] >KAG7023681.1 hypothetical protein SDJN02_14707, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114.4 bits (285), Expect = 3.4e-22
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLRIEGRKTIAIEILQ 60
           MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLR+EG+KT AIEILQ
Sbjct: 267 MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQ 326

[Close]

BLAST of Cmc11g0301511 vs. NCBI nr
Match: XP_024180086.1 (threonine synthase 1, chloroplastic [Rosa chinensis] >PRQ46918.1 putative threonine synthase [Rosa chinensis])

HSP 1 Score: 114.4 bits (285), Expect = 3.4e-22
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLRIEGRKTIAIEILQ 60
           MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLR+EG+KT AIEILQ
Sbjct: 266 MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQ 325

[Close]

BLAST of Cmc11g0301511 vs. NCBI nr
Match: XP_030445371.1 (threonine synthase 1, chloroplastic-like [Syzygium oleosum])

HSP 1 Score: 114.4 bits (285), Expect = 3.4e-22
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLRIEGRKTIAIEILQ 60
           MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLR+EG+KT AIEILQ
Sbjct: 258 MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQ 317

[Close]

BLAST of Cmc11g0301511 vs. NCBI nr
Match: XP_012076993.1 (threonine synthase 1, chloroplastic [Jatropha curcas] >KDP33877.1 hypothetical protein JCGZ_07448 [Jatropha curcas])

HSP 1 Score: 114.4 bits (285), Expect = 3.4e-22
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLRIEGRKTIAIEILQ 60
           MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLR+EG+KT AIEILQ
Sbjct: 267 MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQ 326

[Close]

BLAST of Cmc11g0301511 vs. ExPASy Swiss-Prot
Match: Q9S7B5 (Threonine synthase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TS1 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 5.9e-25
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLRIEGRKTIAIEILQ 60
           MAQLVQPIANGAFVLSIDTDFDGCMKLIRE+TAELPIYLANSLNSLR+EG+KT AIEILQ
Sbjct: 261 MAQLVQPIANGAFVLSIDTDFDGCMKLIREITAELPIYLANSLNSLRLEGQKTAAIEILQ 320

[Close]

BLAST of Cmc11g0301511 vs. ExPASy Swiss-Prot
Match: Q9MT28 (Threonine synthase, chloroplastic OS=Solanum tuberosum OX=4113 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-24
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLRIEGRKTIAIEILQ 60
           MAQLVQPIANGAFVLSIDTDFDGCM+LIREVTAELPIYLANSLNSLR+EG+KT AIEILQ
Sbjct: 254 MAQLVQPIANGAFVLSIDTDFDGCMQLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQ 313

[Close]

BLAST of Cmc11g0301511 vs. ExPASy Swiss-Prot
Match: Q9SSP5 (Threonine synthase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TS2 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.2e-24
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 1   MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLRIEGRKTIAIEILQ 60
           MAQLVQPIANGAFVLSIDTDFDGCM LIREVTAELPIYLANSLNSLR+EG+KT AIEILQ
Sbjct: 252 MAQLVQPIANGAFVLSIDTDFDGCMHLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQ 311

[Close]

BLAST of Cmc11g0301511 vs. ExPASy Swiss-Prot
Match: P09123 (Threonine synthase OS=Bacillus sp. (strain ULM1) OX=231717 GN=thrC PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-08
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 3   QLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLRIEGRKTIAIEI 59
           +L Q +A GA ++SI+ +FD  +K +R + AE PI L NS+N  RIEG+KT A EI
Sbjct: 114 KLAQAVAYGAEIISIEGNFDDALKAVRNIAAEEPITLVNSVNPYRIEGQKTAAFEI 169

[Close]

BLAST of Cmc11g0301511 vs. ExPASy Swiss-Prot
Match: A0R220 (Threonine synthase OS=Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) OX=246196 GN=thrC PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-08
Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 1   MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELP-IYLANSLNSLRIEGRKTIAIEIL 60
           M +L Q + +GA ++ +D +FD C++L R++TA+ P I L NS+N  RIEG+KT A EI+
Sbjct: 122 MGKLAQAVMHGAKIIQVDGNFDDCLELARKLTADFPTIALVNSVNPYRIEGQKTAAFEIV 181

[Close]

BLAST of Cmc11g0301511 vs. ExPASy TrEMBL
Match: A0A6P5RQU7 (Threonine synthase OS=Prunus avium OX=42229 GN=LOC110749211 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.3e-22
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLRIEGRKTIAIEILQ 60
           MAQLVQPIANGAFVLSIDTDFDGCMKLIRE+TAELPIYLANSLNSLRIEG+KT AIEILQ
Sbjct: 266 MAQLVQPIANGAFVLSIDTDFDGCMKLIREITAELPIYLANSLNSLRIEGQKTAAIEILQ 325

[Close]

BLAST of Cmc11g0301511 vs. ExPASy TrEMBL
Match: A0A6J1JK49 (Threonine synthase OS=Cucurbita maxima OX=3661 GN=LOC111485156 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.7e-22
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLRIEGRKTIAIEILQ 60
           MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLR+EG+KT AIEILQ
Sbjct: 267 MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQ 326

[Close]

BLAST of Cmc11g0301511 vs. ExPASy TrEMBL
Match: A0A059CM73 (Threonine synthase OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C00846 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.7e-22
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLRIEGRKTIAIEILQ 60
           MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLR+EG+KT AIEILQ
Sbjct: 262 MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQ 321

[Close]

BLAST of Cmc11g0301511 vs. ExPASy TrEMBL
Match: A0A2P6RKG3 (Threonine synthase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0094161 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.7e-22
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLRIEGRKTIAIEILQ 60
           MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLR+EG+KT AIEILQ
Sbjct: 266 MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQ 325

[Close]

BLAST of Cmc11g0301511 vs. ExPASy TrEMBL
Match: A0A5A7UKY2 (Threonine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G001890 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.7e-22
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLRIEGRKTIAIEILQ 60
           MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLR+EG+KT AIEILQ
Sbjct: 265 MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQ 324

[Close]

BLAST of Cmc11g0301511 vs. TAIR 10
Match: AT4G29840.1 (Pyridoxal-5'-phosphate-dependent enzyme family protein )

HSP 1 Score: 114.0 bits (284), Expect = 4.2e-26
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLRIEGRKTIAIEILQ 60
           MAQLVQPIANGAFVLSIDTDFDGCMKLIRE+TAELPIYLANSLNSLR+EG+KT AIEILQ
Sbjct: 261 MAQLVQPIANGAFVLSIDTDFDGCMKLIREITAELPIYLANSLNSLRLEGQKTAAIEILQ 320

[Close]

BLAST of Cmc11g0301511 vs. TAIR 10
Match: AT1G72810.1 (Pyridoxal-5'-phosphate-dependent enzyme family protein )

HSP 1 Score: 112.1 bits (279), Expect = 1.6e-25
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 1   MAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSLRIEGRKTIAIEILQ 60
           MAQLVQPIANGAFVLSIDTDFDGCM LIREVTAELPIYLANSLNSLR+EG+KT AIEILQ
Sbjct: 252 MAQLVQPIANGAFVLSIDTDFDGCMHLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQ 311

The following BLAST results are available for this feature:

BLAST of Cmc11g0301511 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_021804962.1	2.6e-22	95.00	threonine synthase 1, chloroplastic-like [Prunus avium]	[more]
XP_022960888.1	3.4e-22	95.00	threonine synthase, chloroplastic [Cucurbita moschata] >KAG7023681.1 hypothetica...	[more]
XP_024180086.1	3.4e-22	95.00	threonine synthase 1, chloroplastic [Rosa chinensis] >PRQ46918.1 putative threon...	[more]
XP_030445371.1	3.4e-22	95.00	threonine synthase 1, chloroplastic-like [Syzygium oleosum]	[more]
XP_012076993.1	3.4e-22	95.00	threonine synthase 1, chloroplastic [Jatropha curcas] >KDP33877.1 hypothetical p...	[more]

BLAST of Cmc11g0301511 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7B5	5.9e-25	93.33	Threonine synthase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TS1 PE=1 ...	[more]
Q9MT28	1.3e-24	93.33	Threonine synthase, chloroplastic OS=Solanum tuberosum OX=4113 PE=2 SV=1	[more]
Q9SSP5	2.2e-24	93.33	Threonine synthase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TS2 PE=1 ...	[more]
P09123	1.0e-08	50.00	Threonine synthase OS=Bacillus sp. (strain ULM1) OX=231717 GN=thrC PE=3 SV=1	[more]
A0R220	1.0e-08	46.67	Threonine synthase OS=Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155...	[more]

BLAST of Cmc11g0301511 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P5RQU7	1.3e-22	95.00	Threonine synthase OS=Prunus avium OX=42229 GN=LOC110749211 PE=3 SV=1	[more]
A0A6J1JK49	1.7e-22	95.00	Threonine synthase OS=Cucurbita maxima OX=3661 GN=LOC111485156 PE=3 SV=1	[more]
A0A059CM73	1.7e-22	95.00	Threonine synthase OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C00846 PE=3 SV=1	[more]
A0A2P6RKG3	1.7e-22	95.00	Threonine synthase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0094161 PE=3 SV=1	[more]
A0A5A7UKY2	1.7e-22	95.00	Threonine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G0...	[more]

BLAST of Cmc11g0301511 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29840.1	4.2e-26	93.33	Pyridoxal-5'-phosphate-dependent enzyme family protein	[more]
AT1G72810.1	1.6e-25	93.33	Pyridoxal-5'-phosphate-dependent enzyme family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036052	Tryptophan synthase beta subunit-like PLP-dependent enzyme	GENE3D	3.40.50.1100		coord: 2..43 e-value: 4.4E-15 score: 57.7
IPR036052	Tryptophan synthase beta subunit-like PLP-dependent enzyme	GENE3D	3.40.50.1100		coord: 44..60 e-value: 4.4E-15 score: 57.7
IPR036052	Tryptophan synthase beta subunit-like PLP-dependent enzyme	SUPERFAMILY	53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes	coord: 2..59
None	No IPR available	PANTHER	PTHR10314	CYSTATHIONINE BETA-SYNTHASE	coord: 1..60
None	No IPR available	PANTHER	PTHR10314:SF176	THREONINE SYNTHASE, CHLOROPLASTIC-LIKE ISOFORM X1	coord: 1..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0301511.1	Cmc11g0301511.1	mRNA