Cmc11g0300571 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0300571
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Zinc finger, CCHC-type
Location	CMiso1.1chr11: 20847602 .. 20849094 (+)
RNA-Seq Expression	Cmc11g0300571
Synteny	Cmc11g0300571

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTCATCTTCTTCTCTAAGATAACCCTCTGTTGTCGCTGCTTCATCAGTTGGAGTTAAGATTGGTCTCTTTGGAAGCTTGAGGATTTAAAGTGATGTATTTTTCCATCAAGGATAAGAGTGACCTTGGTAAGCCAATGAAATTAAATTAATATTTTATTAATTTAATTTTAGATCTATTTGGGGGTTTCTTTAAATGTTCAATTGGCTAATTTTTAAGATTTAAATCTTGGATTTTCCCAATTGGTTTCAACCCCCTTTTTTTTAAAGTTAATTAATTTGGGAAAATTTTGGATGTTAGCCAGTTGCTAATTTCATTAATTGAGATACTGAGTTTTCCTTTTATGATTAGAATCAAGTTGATTGGAGAATTTTTACTGTCAGATAGGGAGTACCTTGTTTGGCTAAAATCTCCAAGTAAGAGATTCTCCTACTAGACCTTCGAACTGAATTTAAGAGACCACATGTAATTATGATTATGCATCGATGGTAGCTAAGATGCATAATGTGATGCTATAGATGATGATTGATATTGTGTTTGTGATGATTGATATTGAAATTGATGATGATGACTGATACTATGATTGACGATGATGACTGGTATGTTTATGATGTTTATGATACATGATATATTAATCACATGAATAAGGACGTTATGATTAATACTCATGCCATGTTATGATGTTATGTTATGCTACATGCTATGGATAGGGTGTTCTGTTAACTTTGTCTATTAGAGTCGTACCTGCATGGGTGTCCTTCGGGATCACCACCTATTTAGGACTGTGTGGTCCGACGGGACGCCAGTCTAGCATGGATATAGATATGATTCGAGTGATTCGACGGGGTCCTCGCATCCCGATTGTCTTAGTGTTACCCCCTGGTTCACTACAGACCAGCATGTCCTAGGTGCTCCCTCGGGACACCGAAGACCAGATTTTCGTTCCTACGGGAGCGCATGTTGCACGTGTTCGGGAACGTGCCAGAGATTGGGTACCATTTTCAGGACTCTAATGGGAAGTTAATAGACACCTAGCGGGACTAGTAGTAGGTCCCTTACTGAGTATATGTTTATACTCACTCTTTCTATGTTTAACATTTCAGGCGAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAGAGAAGGATCCGTGACATGCCATATGGGGACTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAATATTCCGTTTTTAATGAAAATTTATTCTTCCCTCGTTTCAAAAAGTGTCTCTTGTCATTGTTTCTTTTTAGTAACGACCTCAGCTTAGTATAAAGAGTTGGGTCGTTACAGAGTTGGGGTATCAGCTAGGATGAACAACGAAGGCTAATGAGTGAAGTCATTGAAAATTTGGAGGGAGAGAGAGATAAATGATGAAAAACGACGATGAAATGTAGATCTTGAAGGGATAGAGCTATTACACGGGGAATTTTTTAAACATTTTTTCAAATTAATTTGGGATTTTAA

mRNA sequence

TTCTTCATCTTCTTCTCTAAGATAACCCTCTGTTGTCGCTGCTTCATCAGTTGGAGTTAAGATTGGTCTCTTTGGAAGCTTGAGGATTTAAAGTGATGTATTTTTCCATCAAGGATAAGAGTGACCTTGGCGAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAGAGAAGGATCCGTGACATGCCATATGGGGACTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAATATTCCGTTTTTAATGAAAATTTATTCTTCCCTCGTTTCAAAAAGTGTCTCTTGTCATTGTTTCTTTTTAGTAACGACCTCAGCTTAGTATAAAGAGTTGGGTCGTTACAGAGTTGGGGTATCAGCTAGGATGAACAACGAAGGCTAATGAGTGAAGTCATTGAAAATTTGGAGGGAGAGAGAGATAAATGATGAAAAACGACGATGAAATGTAGATCTTGAAGGGATAGAGCTATTACACGGGGAATTTTTTAAACATTTTTTCAAATTAATTTGGGATTTTAA

Coding sequence (CDS)

ATGTATTTTTCCATCAAGGATAAGAGTGACCTTGGCGAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAGAGAAGGATCCGTGACATGCCATATGGGGACTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAA

Protein sequence

MYFSIKDKSDLGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF

Homology

[Close]

BLAST of Cmc11g0300571 vs. NCBI nr
Match: TYJ98810.1 (hypothetical protein E5676_scaffold703G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 4.5e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 11 LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 46
          LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF
Sbjct: 27 LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 61

[Close]

BLAST of Cmc11g0300571 vs. NCBI nr
Match: KAA0032396.1 (hypothetical protein E6C27_scaffold219G002730 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 4.5e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 11 LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 46
          LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF
Sbjct: 28 LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 62

[Close]

BLAST of Cmc11g0300571 vs. NCBI nr
Match: TYK24101.1 (hypothetical protein E5676_scaffold943G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 4.5e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 11 LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 46
          LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF
Sbjct: 55 LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 89

[Close]

BLAST of Cmc11g0300571 vs. NCBI nr
Match: KAA0067187.1 (hypothetical protein E6C27_scaffold38G002710 [Cucumis melo var. makuwa] >TYK26035.1 hypothetical protein E5676_scaffold1567G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 4.5e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 11 LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 46
          LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF
Sbjct: 60 LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 94

[Close]

BLAST of Cmc11g0300571 vs. NCBI nr
Match: KAA0033230.1 (hypothetical protein E6C27_scaffold845G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 4.5e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 11 LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 46
          LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF
Sbjct: 27 LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 61

[Close]

BLAST of Cmc11g0300571 vs. ExPASy TrEMBL
Match: A0A5A7VJ46 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1567G00510 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 11 LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 46
          LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF
Sbjct: 60 LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 94

[Close]

BLAST of Cmc11g0300571 vs. ExPASy TrEMBL
Match: A0A5D3BG96 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold703G00090 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 11 LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 46
          LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF
Sbjct: 27 LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 61

[Close]

BLAST of Cmc11g0300571 vs. ExPASy TrEMBL
Match: A0A5A7U6W1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G00110 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 11  LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 46
           LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF
Sbjct: 116 LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 150

[Close]

BLAST of Cmc11g0300571 vs. ExPASy TrEMBL
Match: A0A5A7SQN6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00200 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 11 LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 46
          LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF
Sbjct: 27 LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 61

[Close]

BLAST of Cmc11g0300571 vs. ExPASy TrEMBL
Match: A0A5A7SQT1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002730 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 11 LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 46
          LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF
Sbjct: 28 LGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 62

The following BLAST results are available for this feature:

BLAST of Cmc11g0300571 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98810.1	4.5e-11	100.00	hypothetical protein E5676_scaffold703G00090 [Cucumis melo var. makuwa]	[more]
KAA0032396.1	4.5e-11	100.00	hypothetical protein E6C27_scaffold219G002730 [Cucumis melo var. makuwa]	[more]
TYK24101.1	4.5e-11	100.00	hypothetical protein E5676_scaffold943G00760 [Cucumis melo var. makuwa]	[more]
KAA0067187.1	4.5e-11	100.00	hypothetical protein E6C27_scaffold38G002710 [Cucumis melo var. makuwa] >TYK2603...	[more]
KAA0033230.1	4.5e-11	100.00	hypothetical protein E6C27_scaffold845G00200 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0300571 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc11g0300571 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VJ46	2.2e-11	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BG96	2.2e-11	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U6W1	2.2e-11	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SQN6	2.2e-11	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SQT1	2.2e-11	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Cmc11g0300571 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0300571.1	Cmc11g0300571.1	mRNA